Umit Topaloglu

42 papers B 2C 3Misc 9Journal 17Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
Evaluation of electronic health record to HL7® FHIR® mappings in pediatric research studies.
Int. J. Medical Informatics
Maryam Y. Garza, Zhan Wang, Bhargav Adagarla, Michael W. Rutherford, Umit Topaloglu, Daniel K. Benjamin, Kanecia O. Zimmerman, Eric L. Eisenstein, Karan R. Kumar
2025 J jnl
Beyond the Algorithm: A Field Guide to Deploying AI Agents in Clinical Practice.
CoRR
Jack Gallifant, Katherine C. Kellogg, Matt Butler, Amanda Centi, Shan Chen, Patrick F. Doyle, Sayon Dutta, Joyce Guo, Matthew J. Hadfield, Esther Hahyeon Kim, David E. Kozono, Hugo J. W. L. Aerts, Adam B. Landman, Raymond H. Mak, Rebecca Grochow Mishuris, Tanna L. Nelson, Guergana K. Savova, Elad Sharon, Benjamin C. Silverman, Umit Topaloglu, Jeremy L. Warner, Danielle S. Bitterman
2025 J jnl
Enhancing Gen3 for clinical trial time series analytics and data discovery: a data commons framework for NIH clinical trials.
Frontiers Digit. Health
Meredith C. B. Adams, Colin Griffin, Hunter Adams, Stephen Bryant, Robert W. Hurley, Umit Topaloglu
2025 J jnl
National COVID Cohort Collaborative data enhancements: a path for expanding common data models.
J. Am. Medical Informatics Assoc.
Kellie M. Walters, Marshall Clark, Sofia Dard, Stephanie S. Hong, Elizabeth Kelly, Kristin Kostka, Adam M. Lee, Robert T. Miller, Michele Morris, Matvey B. Palchuk, Emily R. Pfaff, Adam B. Wilcox, Alexis Graves, Alfred (Jerrod) Anzalone, Amin Manna, Amit Saha, Amy Olex, Andrea Zhou, Andrew E. Williams, Andrew Southerland, Andrew T. Girvin, Anita Walden, Anjali A Sharathkumar, Benjamin R. C. Amor, Benjamin Bates, Brian Hendricks, Brijesh Patel, Caleb Alexander, Carolyn T. Bramante, Cavin Ward-Caviness, Charisse R. Madlock-Brown, Christine Suver, Christopher G. Chute, Christopher Dillon, Chunlei Wu, Clare Schmitt, Cliff Takemoto, Dan Housman, Davera Gabriel, David A. Eichmann, Diego Mazzotti, Don Brown, Eilis Boudreau, Elaine L. Hill, Elizabeth Zampino, Emily Carlson Marti, Evan French, Farrukh M. Koraishy, Federico Mariona, Fred W. Prior, George Sokos, Greg Martin, Harold P. Lehmann, Heidi Spratt, Hemalkumar Mehta, Hongfang Liu, Hythem Sidky, J. W. Awori Hayanga, Jami Pincavitch, Jaylyn Clark, Jeremy Richard Harper, Jessica Islam, Jin Ge, Joel Gagnier, Joel H. Saltz, Johanna Loomba, John Buse, Jomol P. Mathew, Joni L. Rutter, Julie A. McMurry, Justin Guinney, Justin Starren, Karen Crowley, Katie Rebecca Bradwell, Ken Wilkins, Kenneth R. Gersing, Kenrick Dwain Cato, Kimberly Murray, Lavance Northington, Lee Allan Pyles, Leonie Misquitta, Lesley Cottrell, Lili M. Portilla, Mariam Deacy, Mark M. Bissell, Mary Emmett, Mary Morrison Saltz, Melissa A. Haendel, Meredith C. B. Adams, Meredith Temple-O'Connor, Michael G. Kurilla, Nabeel Qureshi, Nasia Safdar, Nicole Garbarini, Noha Sharafeldin, Ofer Sadan, Patricia A. Francis, Penny Wung Burgoon, Peter N. Robinson, Philip R. O. Payne, Rafael Fuentes, Randeep Jawa, Rebecca Erwin-Cohen, Rena Patel, Richard A. Moffitt, Richard L. Zhu, Rishi Kamaleswaran, Robert Hurley, Saiju Pyarajan, Sam G. Michael, Samuel Bozzette, Sandeep Mallipattu, Satyanarayana Vedula, Scott Chapman, Shawn T. O'Neil, Soko Setoguchi, Steve Johnson, Tellen D. Bennett, Tiffany Callahan, Umit Topaloglu, Usman Sheikh, Valery Gordon, Vignesh Subbian, Warren A. Kibbe, Wenndy Hernandez, Will Beasley, Will Cooper, William Hillegass, Xiaohan Tanner Zhang
2024 J jnl
Adapting the open-source Gen3 platform and kubernetes for the NIH HEAL IMPOWR and MIRHIQL clinical trial data commons: Customization, cloud transition, and optimization.
J. Biomed. Informatics
Meredith C. B. Adams, Colin Griffin, Hunter Adams, Stephen Bryant, Robert W. Hurley, Umit Topaloglu
2024 J jnl
Improving Equity in Deep Learning Medical Applications with the Gerchberg-Saxton Algorithm.
J. Heal. Informatics Res.
Seha Ay, Michael Cardei, Anne-Marie Meyer, Wei Zhang, Umit Topaloglu
2023 J jnl
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc.
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2023 — conf
Improving Equity in Deep Learning Medical Applications with the Gerchberg-Saxton Algorithm.
ICHI
Seha Ay, Michael Cardei, Anne-Marie Meyer, Wei Zhang, Umit Topaloglu
2022 J jnl
A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images.
Patterns
Qing Lyu, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang, Christopher T. Whitlow
2022 J jnl
VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern.
Bioinform.
Hongyu Zhao, Kun Han, Chao Gao, Vithal Madhira, Umit Topaloglu, Yong Lu, Guangxu Jin
2021 J jnl
A transformer-based deep learning approach for classifying brain metastases into primary organ sites using clinical whole brain MRI images.
CoRR
Qing Lyu, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang, Christopher T. Whitlow
2021 Misc conf
COVID-19 Mortality Prediction among Patients with Cancer Using a Large National Cohort.
AMIA
Feifan Liu, Noha Sharafeldin, Vithal Madhira, Katie R. Bradwell, Qianqian Song, Benjamin Bates, Yu R. Shao, Jing Su, Alfred Anzalone, Timothym Bergquist, Sarah Cutrona, Ben S. Gerber, Peter N. Robinson, Justin Guinney, Umit Topaloglu
2021 — conf
Evaluating Site-Level Implementations of the HL7 FHIR Standard to Support eSource Data Exchange in Clinical Research.
MIE
Maryam Y. Garza, Michael W. Rutherford, Bhargav Adagarla, Eric L. Eisenstein, Karan R. Kumar, Kanecia O. Zimmerman, Umit Topaloglu, Meredith N. Zozus
2021 C conf
Federated Learning in Healthcare is the Future, But the Problems Are Contemporary.
WEBIST
Mustafa Y. Topaloglu, Elisabeth M. Morrell, Umit Topaloglu
2021 J jnl
In the Pursuit of Privacy: The Promises and Predicaments of Federated Learning in Healthcare.
Frontiers Artif. Intell.
Mustafa Y. Topaloglu, Elisabeth M. Morrell, Suraj Rajendran, Umit Topaloglu
2021 Misc conf
Pragmatic Patient Reported Outcomes via EHR Patient Portal vs. Telephone: A Pilot Randomized Controlled Trial among Adults with Epilepsy and Anxiety or Depression Symptoms.
AMIA
Heidi M. Munger Clary, Beverly M. Snively, Umit Topaloglu, Pamela Duncan, James Kimball, Halley Alexander, Gretchen A. Brenes
2020 Misc conf
Evaluating the Coverage of the HL7® FHIR® Standard to Support eSource Data Exchange Implementations for use in Multi-Site Clinical Research Studies.
AMIA
Maryam Y. Garza, Michael W. Rutherford, Sahiti Myneni, Susan H. Fenton, Anita Walden, Umit Topaloglu, Eric L. Eisenstein, Karan R. Kumar, Kanecia Zimmerman, Mitra Rocca, Scott Gordon, Sam Hume, Zhan Wang, Meredith N. Zozus
2020 Misc conf
Extraction of Diagnosis codes from Health Reports using available NLP tools for a performant implementation in an Academic Medical Center.
AMIA
Arnav Bhandari, Michael Horvath, Greg Kucera, Umit Topaloglu
2020 Misc conf
Leveraging Single-cell Data through Graph-based Artificial Intelligence.
AMIA
Qianqian Song, Umit Topaloglu, Jing Su, Wei Zhang
2020 Misc conf
Understanding facilitators and barriers to development and adoption of EHR-to-eCRF technology in multi-site clinical research.
AMIA
Bhargav Adagarla, Maryam Y. Garza, Karan R. Kumar, Umit Topaloglu, Anita Walden, Kanecia Zimmerman, Meredith N. Zozus, Eric L. Eisenstein
2019 Misc conf
Developing Biomedical Informatics Capability to Support Learning Health System: Challenges and Potential Solutions.
AMIA
Martin S. Kohn, Umit Topaloglu, Metin N. Gurcan, Brian J. Wells, Ajay Dharod
2015 Misc conf
An Analytics Approach for Adverse Drug Event Discovery.
AMIA
Mohammadreza Rezaie, Kenji Yoshigoe, Umit Topaloglu
2014 J jnl
Social network analysis of biomedical research collaboration networks in a CTSA institution.
J. Biomed. Informatics
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, Hari Eswaran, William R. Hogan
2013 J jnl
Developing a semantically rich ontology for the biobank-administration domain.
J. Biomed. Semant.
Mathias Brochhausen, Martin N. Fransson, Nitin Kanaskar, Mikael Eriksson, Roxana Merino-Martinez, Roger A. Hall, Loreana Norlin, Sanela Kjellqvist, Maria Hortlund, Umit Topaloglu, William R. Hogan, Jan-Eric Litton
2013 — conf
SIM: A smartphone-based identity management framework and its application to Arkansas trauma image repository.
BIBM
Mengjun Xie, Umit Topaloglu, Thomas Powell, Chao Peng, Jiang Bian
2013 — conf
Understanding biomedicai research collaborations through social network analysis: A case study.
BIBM
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, William R. Hogan
2012 — conf
Towards large-scale twitter mining for drug-related adverse events.
SHB
Jiang Bian, Umit Topaloglu, Fan Yu
2010 — conf
A Secure Distributed File System for Medical Image Archiving.
SocialCom/PASSAT
Jiang Bian, Remzi Seker, Umit Topaloglu
2010 — conf
Concept integration from the caTIES to i2b2 using the UMLS semantic network.
IHI
Vincent Yip, Umit Topaloglu
2009 J jnl
Automatic identification of angiogenesis in double stained images of liver tissue.
BMC Bioinform.
Mutlu Mete, Leah Hennings, Horace J. Spencer III, Umit Topaloglu
2009 B conf
Design of a Lattice-based Access Control Scheme.
SMC
Chia-Chu Chiang, Coskun Bayrak, Remzi Seker, Umit Topaloglu, Rustu Murat Demirer, Nasrola Samadi, Suleyman Tek, Jiang Bian, Guangxu Zhou, Xiaoran Wang
2009 C conf
Statistical comparison of color model-classifier pairs in hematoxylin and eosin stained histological images.
CIBCB
Mutlu Mete, Umit Topaloglu
2008 — conf
A role-based secure group communication framework.
SoSE
Jiang Bian, Umit Topaloglu, Remzi Seker, Coskun Bayrak, Chia-Chu Chiang
2008 — conf
Off-the-Record Secure Chat Room.
WEBIST (1)
Jiang Bian, Remzi Seker, Umit Topaloglu, Coskun Bayrak
2008 J jnl
Secure mobile agent execution in virtual environment.
Auton. Agents Multi Agent Syst.
Umit Topaloglu, Coskun Bayrak
2007 Misc conf
Off-the-Record Instant Messaging for Group Conversation.
IRI
Jiang Bian, Remzi Seker, Umit Topaloglu
2006 B conf
"Who Stole the Bat?" Deception Detection on the Basis of Actions.
SMC
James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson
2006 C conf
A Child's Story to Illustrate Automated Reasoning Systems Using Opportunity and History.
ISI
James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson
2005 J jnl
Globus security model for grid environment.
ACM SIGSOFT Softw. Eng. Notes
Nitin Kanaskar, Umit Topaloglu, Coskun Bayrak
2005 — conf
Polymorphic Compression.
ISCIS
Umit Topaloglu, Coskun Bayrak
2005 — conf
Secure Mobile Agent Deployment and Communication Towards Autonomous Semantic Grid.
WRAC
Umit Topaloglu, Coskun Bayrak, Nitin Kanaskar
2001 J jnl
Process Control via Internet.
Trans. SDPS
Z. G. Altun, Umit Topaloglu, A. V. Saygin, Coskun Bayrak