Ulf Leser - RankMe

282 papers A* 7A 6B 21C 4Misc 6Journal 143Unranked 84

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A systematic evaluation of the potential of carbon-aware execution for scientific workflows. Future Gener. Comput. Syst. Kathleen West, Youssef Moawad, Fabian Lehmann, Vasilis Bountris, Ulf Leser, Yehia Elkhatib, Lauritz Thamsen
2026	J	`jnl`	A terminology for scientific workflow systems. Future Gener. Comput. Syst. Frédéric Suter, Tainã Coleman, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Kyle Chard, Iacopo Colonnelli, Ewa Deelman, Paolo Di Tommaso, Thomas Fahringer, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Johannes Köster, Ulf Leser, Kshitij Mehta, Hilary Oliver, Jayson Luc Peterson, Giovanni Pizzi, Loïc Pottier, Raül Sirvent, Eric Suchyta, Douglas Thain, Sean R. Wilkinson, Justin M. Wozniak, Rafael Ferreira da Silva
2026	J	`jnl`	Supporting Workflow Reproducibility by Linking Bioinformatics Tools across Papers and Executable Code. CoRR Clémence Sebe, Olivier Ferret, Aurélie Névéol, Mahdi Esmailoghli, Ulf Leser, Sarah Cohen-Boulakia
2025	J	`jnl`	A Systematic Evaluation of the Potential of Carbon-Aware Execution for Scientific Workflows. CoRR Kathleen West, Youssef Moawad, Fabian Lehmann, Vasilis Bountris, Ulf Leser, Yehia Elkhatib, Lauritz Thamsen
2025	J	`jnl`	A Terminology for Scientific Workflow Systems. CoRR Frédéric Suter, Tainã Coleman, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Kyle Chard, Iacopo Colonnelli, Ewa Deelman, Paolo Di Tommaso, Thomas Fahringer, Carole A. Goble, Shantenu Jha, Daniel S. Katz, Johannes Köster, Ulf Leser, Kshitij Mehta, Hilary Oliver, J. Luc Peterson, Giovanni Pizzi, Loïc Pottier, Raül Sirvent, Eric Suchyta, Douglas Thain, Sean R. Wilkinson, Justin M. Wozniak, Rafael Ferreira da Silva
2025	J	`jnl`	Benchmarking machine learning methods for the identification of mislabeled data. Artif. Intell. Rev. Lusine Nazaretyan, Ulf Leser, Martin Kircher
2025	J	`jnl`	CLaP - State Detection from Time Series. CoRR Arik Ermshaus, Patrick Schäfer, Ulf Leser
2025	J	`jnl`	CLaP - State Detection from Time Series. Proc. VLDB Endow. Arik Ermshaus, Patrick Schäfer, Ulf Leser
2025	B	`conf`	Domain-Specific Data Compression for Nextflow with COMET-FLOW. IEEE Big Data Ninon De Mecquenem, Simon Bosse, Vasilis Bountris, Fabian Lehmann, Somayeh Mohammadi, Pauline Karega, Knut Reinert, Ulf Leser
2025	J	`jnl`	Enhancing Document Retrieval for Curating N-ary Relations in Knowledge Bases. CoRR Xing David Wang, Ulf Leser
2025	J	`jnl`	Exploring the Potential of Carbon-Aware Execution for Scientific Workflows. CoRR Kathleen West, Fabian Lehmann, Vasilis Bountris, Ulf Leser, Yehia Elkhatib, Lauritz Thamsen
2025	A*	`conf`	Fast and Exact Similarity Search in Less than a Blink of an Eye. ICDE Patrick Schäfer, Jakob Brand, Ulf Leser, Botao Peng, Themis Palpanas
2025	B	`conf`	HyProv: Hybrid Provenance Management for Scientific Workflows. IEEE Big Data Vasilis Bountris, Lauritz Thamsen, Ulf Leser
2025	J	`jnl`	HyProv: Hybrid Provenance Management for Scientific Workflows. CoRR Vasilis Bountris, Lauritz Thamsen, Ulf Leser
2025	J	`jnl`	Knowledge-augmented Pre-trained Language Models for Biomedical Relation Extraction. CoRR Mario Sänger, Ulf Leser
2025	J	`jnl`	Knowledge-augmented pre-trained language models for biomedical relation extraction. BMC Bioinform. Mario Sänger, Ulf Leser
2025	J	`jnl`	MEDNER.DE: Medicinal Product Entity Recognition in German-Specific Contexts. IEEE Access Farnaz Zeidi, Manuela Messelhäußer, Roman Christof, Xing David Wang, Ulf Leser, Dirk Mentzer, Renate König, Liam Harold Childs
2025	J	`jnl`	Strategies to Measure Energy Consumption Using RAPL During Workflow Execution on Commodity Clusters. CoRR Philipp Thamm, Ulf Leser
2025	J	`jnl`	WOW: Workflow-Aware Data Movement and Task Scheduling for Dynamic Scientific Workflows. CoRR Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke, Ninon De Mecquenem, Ansgar Lößer, Sören Becker, Katarzyna Ewa Lewinska, Lauritz Thamsen, Ulf Leser
2024	J	`jnl`	BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguation. CoRR Samuele Garda, Ulf Leser
2024	J	`jnl`	BELHD: improving biomedical entity linking with homonym disambiguation. Bioinform. Samuele Garda, Ulf Leser
2024	J	`jnl`	Beyond Silos: Next Steps in Research Data Management Report from the 2024 Spring Symposium of FG Datenbanken. Datenbank-Spektrum Birgitta König-Ries, Ulf Leser, Bernhard Seeger, Sirko Schindler
2024	B	`conf`	CuttleFlow: Infrastructure-Specific Workflow Adaption for Improved Reusability. e-Science Ninon De Mecquenem, Simon Bosse, Vasilis Bountris, Somayeh Mohammadi, Knut Reinert, Ulf Leser
2024	J	`jnl`	Discovering Leitmotifs in Multidimensional Time Series. CoRR Patrick Schäfer, Ulf Leser
2024	J	`jnl`	Discovering Leitmotifs in Multidimensional Time Series. Proc. VLDB Endow. Patrick Schäfer, Ulf Leser
2024	J	`jnl`	Fast and Exact Similarity Search in less than a Blink of an Eye. CoRR Patrick Schäfer, Jakob Brand, Ulf Leser, Botao Peng, Themis Palpanas
2024	—	`conf`	HU-WBI at BioASQ12B Phase A: Exploring Rank Fusion of Dense Retrievers and Re-rankers. CLEF (Working Notes) Oguz Serbetçi, Xing David Wang, Ulf Leser
2024	J	`jnl`	HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools. Bioinform. Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser
2024	J	`jnl`	HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools. CoRR Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser
2024	J	`jnl`	Lotaru: Locally predicting workflow task runtimes for resource management on heterogeneous infrastructures. Future Gener. Comput. Syst. Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Ulf Leser, Odej Kao
2024	—	`conf`	Multivariate Human Activity Segmentation: Systematic Benchmark with ClaSP. AALTD@ECML/PKDD Arik Ermshaus, Patrick Schäfer, Ulf Leser
2024	—	`conf`	Optimizing Job/Task Granularity for Metagenomic Workflows in Heterogeneous Cluster Infrastructures. EDBT/ICDT Workshops Somayeh Mohammadi, Latif Pourkarimi, Manuel Zschäbitz, Tristan Aretz, Ninon De Mecquenem, Ulf Leser, Knut Reinert
2024	B	`conf`	Ponder: Online Prediction of Task Memory Requirements for Scientific Workflows. e-Science Fabian Lehmann, Jonathan Bader, Ninon De Mecquenem, Xing Wang, Vasilis Bountris, Florian Friederici, Ulf Leser, Lauritz Thamsen
2024	J	`jnl`	Ponder: Online Prediction of Task Memory Requirements for Scientific Workflows. CoRR Fabian Lehmann, Jonathan Bader, Ninon De Mecquenem, Xing Wang, Vasilis Bountris, Florian Friederici, Ulf Leser, Lauritz Thamsen
2024	J	`jnl`	Raising the ClaSS of Streaming Time Series Segmentation. Proc. VLDB Endow. Arik Ermshaus, Patrick Schäfer, Ulf Leser
2024	—	`conf`	TLIMB - A Transfer Learning Framework for IMage Analysis of the Brain. EDBT/ICDT Workshops Marc-Andre Schulz, Jan Philipp Albrecht, Alpay Yilmaz, Alexander Koch, Dagmar Kainmüller, Ulf Leser, Kerstin Ritter
2024	J	`jnl`	Validity constraints for data analysis workflows. Future Gener. Comput. Syst. Florian Schintke, Khalid Belhajjame, Ninon De Mecquenem, David Frantz, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Paolo Missier, Rebecca Sattler, Jan Arne Sparka, Daniel T. Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser
2024	J	`jnl`	Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows. CoRR Rafael Ferreira da Silva, Deborah Bard, Kyle Chard, Shaun De Witt, Ian T. Foster, Tom Gibbs, Carole A. Goble, William F. Godoy, Johan Gustafsson, Utz-Uwe Haus, Stephen Hudson, Shantenu Jha, Laila Los, Drew Paine, Frédéric Suter, Logan T. Ward, Sean R. Wilkinson, Marcos Amaris, Yadu N. Babuji, Jonathan Bader, Riccardo Balin, Daniel Balouek, Sarah J. Beecroft, Khalid Belhajjame, Rajat Bhattarai, Wes Brewer, Paul Brunk, Silvina Caíno-Lores, Henri Casanova, Daniela Cassol, Jared Coleman, Tainã Coleman, Iacopo Colonnelli, Anderson Andrei Da Silva, Daniel de Oliveira, Pascal Elahi, Nour Elfaramawy, Wael R. Elwasif, Brian Etz, Thomas Fahringer, Wesley Ferreira, Rosa Filgueira, Jacob Fosso-Tande, Luiz Gadelha, Andy Gallo, Daniel Garijo, Yiannis Georgiou, Philipp Gritsch, Patricia Grubel, Amal Gueroudji, Quentin Guilloteau, Carlo Hamalainen, Rolando P. Hong Enriquez, Lauren Huet, Kevin Hunter Kesling, Paula Iborra, Shiva Jahangiri, Jan Janssen, Joe Jordan, Sehrish Kanwal, Liliane N. O. Kunstmann, Fabian Lehmann, Ulf Leser, Chen Li, Peini Liu, Jakob Lüttgau, Richard Lupat, José M. Fernández, Ketan Maheshwari, Tanu Malik, Jack Marquez, Motohiko Matsuda, Doriana Medic, Somayeh Mohammadi, Alberto Mulone, John-Luke Navarro, Kin Wai Ng, Klaus Nölp, Bruno de Paula Kinoshita, Ryan Prout, Michael R. Crusoe, Sashko Ristov, Stefan A. Robila, Daniel Rosendo, Billy Rowell, Jedrzej Rybicki, Hector Sanchez, Nishant Saurabh, Sumit Kumar Saurav, Tom Scogland, Dinindu Senanayake, Woong Shin, Raül Sirvent, Tyler J. Skluzacek, Barry Sly-Delgado, Stian Soiland-Reyes, Abel Souza, Renan Souza, Domenico Talia, Nathan R. Tallent
2024	J	`jnl`	preon: Fast and accurate entity normalization for drug names and cancer types in precision oncology. Bioinform. Arik Ermshaus, Michael Piechotta, Gina Rüter, Ulrich Keilholz, Ulf Leser, Manuela Benary
2023	J	`jnl`	A mathematical programming approach for resource allocation of data analysis workflows on heterogeneous clusters. J. Supercomput. Somayeh Mohammadi, Latif Pourkarimi, Felix Droop, Ninon De Mecquenem, Ulf Leser, Knut Reinert
2023	—	`conf`	Applicability of Models Trained on Generated Clinical German Datasets on Out-domain Data. LWDA Oguz Serbetçi, Ulf Leser
2023	J	`jnl`	BELB: a Biomedical Entity Linking Benchmark. CoRR Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
2023	J	`jnl`	BELB: a biomedical entity linking benchmark. Bioinform. Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
2023	J	`jnl`	ClaSP: parameter-free time series segmentation. Data Min. Knowl. Discov. Arik Ermshaus, Patrick Schäfer, Ulf Leser
2023	—	`conf`	Comparing Humans and Algorithms in Feature Ranking: A Case-Study in the Medical Domain. LWDA Fabio Barth, Leon Weber-Genzel, Ulf Leser
2023	B	`conf`	Contract-Driven Design of Scientific Data Analysis Workflows. e-Science Anh Duc Vu, Jan Arne Sparka, Ninon De Mecquenem, Timo Kehrer, Ulf Leser, Lars Grunske
2023	B	`conf`	Design by Contract Revisited in the Context of Scientific Data Analysis Workflows. e-Science Anh Duc Vu, Jan Arne Sparka, Ninon De Mecquenem, Timo Kehrer, Ulf Leser, Lars Grunske
2023	B	`conf`	How Workflow Engines Should Talk to Resource Managers: A Proposal for a Common Workflow Scheduling Interface. CCGrid Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke, Lauritz Thamsen, Ulf Leser
2023	J	`jnl`	How Workflow Engines Should Talk to Resource Managers: A Proposal for a Common Workflow Scheduling Interface. CoRR Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke, Lauritz Thamsen, Ulf Leser
2023	—	`conf`	Human Activity Segmentation Challenge @ ECML/PKDD'23. AALTD@ECML/PKDD Arik Ermshaus, Patrick Schäfer, Anthony J. Bagnall, Thomas Guyet, Georgiana Ifrim, Vincent Lemaire, Ulf Leser, Colin Leverger, Simon Malinowski
2023	J	`jnl`	Integrating HPC, AI, and Workflows for Scientific Data Analysis (Dagstuhl Seminar 23352). Dagstuhl Reports Rosa M. Badia, Laure Berti-Équille, Rafael Ferreira da Silva, Ulf Leser
2023	J	`jnl`	Large Language Models to the Rescue: Reducing the Complexity in Scientific Workflow Development Using ChatGPT. CoRR Mario Sänger, Ninon De Mecquenem, Katarzyna Ewa Lewinska, Vasilis Bountris, Fabian Lehmann, Ulf Leser, Thomas Kosch
2023	J	`jnl`	Lotaru: Locally Predicting Workflow Task Runtimes for Resource Management on Heterogeneous Infrastructures. CoRR Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Ulf Leser, Odej Kao
2023	—	`conf`	Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. SC Workshops Jonathan Bader, Jim Belak, Matthew T. Bement, Matthew Berry, Robert Carson, Daniela Cassol, Stephen Chan, John Coleman, Kastan Day, Alejandro Duque, Kjiersten Fagnan, Jeff Froula, Shantenu Jha, Daniel S. Katz, Piotr Kica, Volodymyr V. Kindratenko, Edward Kirton, Ramani Kothadia, Daniel E. Laney, Fabian Lehmann, Ulf Leser, Sabina Licholai, Maciej Malawski, Mario Melara, Elais Player Jackson, Matthew Rolchigo, Setareh Sarrafan, Seung-Jin Sul, Abdullah Syed, Lauritz Thamsen, Mikhail Titov, Matteo Turilli, Silvina Caíno-Lores, Anirban Mandal
2023	J	`jnl`	PEDL+: protein-centered relation extraction from PubMed at your fingertip. Bioinform. Leon Weber, Fabio Barth, Leonie Lorenz, Fabian Konrath, Kirsten Huska, Jana Wolf, Ulf Leser
2023	J	`jnl`	Raising the ClaSS of Streaming Time Series Segmentation. CoRR Arik Ermshaus, Patrick Schäfer, Ulf Leser
2023	J	`jnl`	The Common Workflow Scheduler Interface: Status Quo and Future Plans. CoRR Fabian Lehmann, Jonathan Bader, Lauritz Thamsen, Ulf Leser
2023	—	`conf`	Time Series Segmentation Applied to a New Data Set for Mobile Sensing of Human Activities. EDBT/ICDT Workshops Arik Ermshaus, Sunita Singh, Ulf Leser
2023	J	`jnl`	Validity Constraints for Data Analysis Workflows. CoRR Florian Schintke, Ninon De Mecquenem, David Frantz, Vanessa Emanuela Guarino, Marcus Hilbrich, Fabian Lehmann, Rebecca Sattler, Jan Arne Sparka, Daniel T. Speckhard, Hermann Stolte, Anh Duc Vu, Ulf Leser
2023	J	`jnl`	WEASEL 2.0 - A Random Dilated Dictionary Transform for Fast, Accurate and Memory Constrained Time Series Classification. CoRR Patrick Schäfer, Ulf Leser
2023	J	`jnl`	WEASEL 2.0: a random dilated dictionary transform for fast, accurate and memory constrained time series classification. Mach. Learn. Patrick Schäfer, Ulf Leser
2022	—	`conf`	BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering. BioNLP@ACL Xing David Wang, Ulf Leser, Leon Weber
2022	J	`jnl`	Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models. Database J. Biol. Databases Curation Leon Weber, Mario Sänger, Samuele Garda, Fabio Barth, Christoph Alt, Ulf Leser
2022	J	`jnl`	ClaSP - Parameter-free Time Series Segmentation. CoRR Arik Ermshaus, Patrick Schäfer, Ulf Leser
2022	B	`conf`	Lotaru: Locally Estimating Runtimes of Scientific Workflow Tasks in Heterogeneous Clusters. SSDBM Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Jonathan Will, Ulf Leser, Odej Kao
2022	J	`jnl`	Lotaru: Locally Estimating Runtimes of Scientific Workflow Tasks in Heterogeneous Clusters. CoRR Jonathan Bader, Fabian Lehmann, Lauritz Thamsen, Jonathan Will, Ulf Leser, Odej Kao
2022	J	`jnl`	Motiflets - Fast and Accurate Detection of Motifs in Time Series. CoRR Patrick Schäfer, Ulf Leser
2022	J	`jnl`	Motiflets - Simple and Accurate Detection of Motifs in Time Series. Proc. VLDB Endow. Patrick Schäfer, Ulf Leser
2022	J	`jnl`	RegEl corpus: identifying DNA regulatory elements in the scientific literature. Database J. Biol. Databases Curation Samuele Garda, Freyda Lenihan-Geels, Sebastian Proft, Stefanie Hochmuth, Markus Schuelke, Dominik Seelow, Ulf Leser
2022	C	`conf`	Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures. IPCCC Jonathan Bader, Fabian Lehmann, Alexander Groth, Lauritz Thamsen, Dominik Scheinert, Jonathan Will, Ulf Leser, Odej Kao
2022	J	`jnl`	Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures. CoRR Jonathan Bader, Fabian Lehmann, Alexander Groth, Lauritz Thamsen, Dominik Scheinert, Jonathan Will, Ulf Leser, Odej Kao
2022	—	`conf`	Window Size Selection in Unsupervised Time Series Analytics: A Review and Benchmark. AALTD@ECML/PKDD Arik Ermshaus, Patrick Schäfer, Ulf Leser
2021	—	`conf`	A Community Roadmap for Scientific Workflows Research and Development. WORKS Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf
2021	J	`jnl`	A Community Roadmap for Scientific Workflows Research and Development. CoRR Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Ilkay Altintas, Rosa M. Badia, Bartosz Balis, Tainã Coleman, Frederik Coppens, Frank Di Natale, Bjoern Enders, Thomas Fahringer, Rosa Filgueira, Grigori Fursin, Daniel Garijo, Carole A. Goble, Dorran Howell, Shantenu Jha, Daniel S. Katz, Daniel E. Laney, Ulf Leser, Maciej Malawski, Kshitij Mehta, Loïc Pottier, Jonathan Ozik, J. Luc Peterson, Lavanya Ramakrishnan, Stian Soiland-Reyes, Douglas Thain, Matthew Wolf
2021	A	`conf`	ClaSP - Time Series Segmentation. CIKM Patrick Schäfer, Arik Ermshaus, Ulf Leser
2021	—	`conf`	Early Detection of Sexual Predators in Chats. ACL/IJCNLP (1) Matthias Vogt, Ulf Leser, Alan Akbik
2021	—	`conf`	Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling. EMNLP (1) Leon Weber, Jannes Münchmeyer, Samuele Garda, Ulf Leser
2021	—	`conf`	FORCE on Nextflow: Scalable Analysis of Earth Observation Data on Commodity Clusters. CIKM Workshops Fabian Lehmann, David Frantz, Sören Becker, Ulf Leser, Patrick Hostert
2021	J	`jnl`	HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition. Bioinform. Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, Alan Akbik
2021	J	`jnl`	Large-scale entity representation learning for biomedical relationship extraction. Bioinform. Mario Sänger, Ulf Leser
2021	J	`jnl`	The Collaborative Research Center FONDA. Datenbank-Spektrum Ulf Leser, Marcus Hilbrich, Claudia Draxl, Peter Eisert, Lars Grunske, Patrick Hostert, Dagmar Kainmüller, Odej Kao, Birte Kehr, Timo Kehrer, Christoph Koch, Volker Markl, Henning Meyerhenke, Tilmann Rabl, Alexander Reinefeld, Knut Reinert, Kerstin Ritter, Björn Scheuermann, Florian Schintke, Nicole Schweikardt, Matthias Weidlich
2021	—	`conf`	WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers. BioNLP@NAACL-HLT Mario Sänger, Leon Weber, Ulf Leser
2021	J	`jnl`	Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. CoRR Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Tainã Coleman, Dan Laney, Dong H. Ahn, Shantenu Jha, Dorran Howell, Stian Soiland-Reyes, Ilkay Altintas, Douglas Thain, Rosa Filgueira, Yadu N. Babuji, Rosa M. Badia, Bartosz Balis, Silvina Caíno-Lores, Scott Callaghan, Frederik Coppens, Michael R. Crusoe, Kaushik De, Frank Di Natale, Tu Mai Anh Do, Bjoern Enders, Thomas Fahringer, Anne Fouilloux, Grigori Fursin, Alban Gaignard, Alex Ganose, Daniel Garijo, Sandra Gesing, Carole A. Goble, Adil Hasan, Sebastiaan Huber, Daniel S. Katz, Ulf Leser, Douglas Lowe, Bertram Ludäscher, Ketan Maheshwari, Maciej Malawski, Rajiv Mayani, Kshitij Mehta, André Merzky, Todd S. Munson, Jonathan Ozik, Loïc Pottier, Sashko Ristov, Mehdi Roozmeh, Renan Souza, Frédéric Suter, Benjamín Tovar, Matteo Turilli, Karan Vahi, Alvaro Vidal-Torreira, Wendy R. Whitcup, Michael Wilde, Alan R. Williams, Matthew Wolf, Justin M. Wozniak
2020	—	`conf`	Biomedical Event Extraction as Multi-turn Question Answering. LOUHI@EMNLP Xing David Wang, Leon Weber, Ulf Leser
2020	J	`jnl`	DeepTable: a permutation invariant neural network for table orientation classification. Data Min. Knowl. Discov. Maryam Habibi, Johannes Starlinger, Ulf Leser
2020	J	`jnl`	Finding k-shortest paths with limited overlap. VLDB J. Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2020	J	`jnl`	HUNER: improving biomedical NER with pretraining. Bioinform. Leon Weber, Jannes Münchmeyer, Tim Rocktäschel, Maryam Habibi, Ulf Leser
2020	J	`jnl`	HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition. CoRR Leon Weber, Mario Sänger, Jannes Münchmeyer, Maryam Habibi, Ulf Leser, Alan Akbik
2020	J	`jnl`	PEDL: extracting protein-protein associations using deep language models and distant supervision. Bioinform. Leon Weber, Kirsten Thobe, Oscar Arturo Migueles Lozano, Jana Wolf, Ulf Leser
2020	J	`jnl`	PatSeg: A Sequential Patent Segmentation Approach. Big Data Res. Maryam Habibi, Astrid Rheinländer, Wolfgang Thielemann, Robert Adams, Peter Fischer, Sylvia Krolkiewicz, David Luis Wiegandt, Ulf Leser
2020	J	`jnl`	Portability of Scientific Workflows in NGS Data Analysis: A Case Study. CoRR Christopher Schiefer, Marc Bux, Jörgen Brandt, Clemens Messerschmidt, Knut Reinert, Dieter Beule, Ulf Leser
2020	J	`jnl`	TEASER: early and accurate time series classification. Data Min. Knowl. Discov. Patrick Schäfer, Ulf Leser
2020	—	`conf`	TabSim: A Siamese Neural Network for Accurate Estimation of Table Similarity. IEEE BigData Maryam Habibi, Johannes Starlinger, Ulf Leser
2020	J	`jnl`	TabSim: A Siamese Neural Network for Accurate Estimation of Table Similarity. CoRR Maryam Habibi, Johannes Starlinger, Ulf Leser
2019	A*	`conf`	BB-Tree: A Main-Memory Index Structure for Multidimensional Range Queries. ICDE Stefan Sprenger, Patrick Schäfer, Ulf Leser
2019	B	`conf`	BB-Tree: A practical and efficient main-memory index structure for multidimensional workloads. EDBT Stefan Sprenger, Patrick Schäfer, Ulf Leser
2019	—	`conf`	Classifying German Animal Experiment Summaries with Multi-lingual BERT at CLEF eHealth 2019 Task 1. CLEF (Working Notes) Mario Sänger, Leon Weber, Madeleine Kittner, Ulf Leser
2019	—	`conf`	Feedback-Based Resource Allocation for Batch Scheduling of Scientific Workflows. HPCS Carl Witt, Dennis Wagner, Ulf Leser
2019	Misc	`conf`	Information Retrieval for Precision Oncology. BTW Jurica Seva, Julian Goetze, Mario Lamping, Damian Tobias Rieke, Reinhold Schaefer, Ulf Leser
2019	—	`conf`	Learning Low-Wastage Memory Allocations for Scientific Workflows at IceCube. HPCS Carl Witt, Jakob van Santen, Ulf Leser
2019	—	`conf`	NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. ACL (1) Leon Weber, Pasquale Minervini, Jannes Münchmeyer, Ulf Leser, Tim Rocktäschel
2019	J	`jnl`	NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. CoRR Leon Weber, Pasquale Minervini, Jannes Münchmeyer, Ulf Leser, Tim Rocktäschel
2019	J	`jnl`	Predictive performance modeling for distributed batch processing using black box monitoring and machine learning. Inf. Syst. Carl Witt, Marc Bux, Wladislaw Gusew, Ulf Leser
2019	J	`jnl`	TEASER: Early and Accurate Time Series Classification. CoRR Patrick Schäfer, Ulf Leser
2019	J	`jnl`	VIST - a Variant-Information Search Tool for precision oncology. BMC Bioinform. Jurica Seva, David Luis Wiegandt, Julian Goetze, Mario Lamping, Damian Rieke, Reinhold Schaefer, Patrick Jähnichen, Madeleine Kittner, Steffen Pallarz, Johannes Starlinger, Ulrich Keilholz, Ulf Leser
2018	—	`conf`	Classifying Land Cover from Satellite Images Using Time Series Analytics. EDBT/ICDT Workshops Patrick Schäfer, Dirk Pflugmacher, Patrick Hostert, Ulf Leser
2018	J	`jnl`	Column-wise compression of open relational data. Inf. Sci. Sebastian Wandelt, Xiaoqian Sun, Ulf Leser
2018	J	`jnl`	Cross-lingual Candidate Search for Biomedical Concept Normalization. CoRR Roland Roller, Madeleine Kittner, Dirk Weissenborn, Ulf Leser
2018	—	`conf`	Dissecting Company Names using Sequence Labeling. LWDA Michael Loster, Manuel Hegner, Felix Naumann, Ulf Leser
2018	—	`conf`	Exploiting Automatic Vectorization to Employ SPMD on SIMD Registers. ICDE Workshops Stefan Sprenger, Steffen Zeuch, Ulf Leser
2018	—	`conf`	Finding SIGSPATIAL/GIS Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2018	J	`jnl`	Finding k-Dissimilar Paths with Minimum Collective Length. CoRR Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser, David B. Blumenthal
2018	—	`ch.`	Graph Management in the Life Sciences. Encyclopedia of Database Systems (2nd ed.) Ulf Leser, Silke Trißl
2018	—	`conf`	Identifying Key Sentences for Precision Oncology Using Semi-Supervised Learning. BioNLP Jurica Seva, Martin Wackerbauer, Ulf Leser
2018	J	`jnl`	Multidimensional Range Queries on Modern Hardware. CoRR Stefan Sprenger, Patrick Schäfer, Ulf Leser
2018	B	`conf`	Multidimensional range queries on modern hardware. SSDBM Stefan Sprenger, Patrick Schäfer, Ulf Leser
2018	—	`conf`	POS: Online Learning for Memory-Aware Scheduling of Scientific Workflows. eScience Carl Witt, Dennis Wagner, Ulf Leser
2018	J	`jnl`	Predictive Performance Modeling for Distributed Computing using Black-Box Monitoring and Machine Learning. CoRR Carl Witt, Marc Bux, Wladislaw Gusew, Ulf Leser
2018	—	`ch.`	Semantic Data Integration for Life Science Entities. Encyclopedia of Database Systems (2nd ed.) Ulf Leser
2018	J	`jnl`	Set Similarity Joins on MapReduce: An Experimental Survey. Proc. VLDB Endow. Fabian Fier, Nikolaus Augsten, Panagiotis Bouros, Ulf Leser, Johann-Christoph Freytag
2018	J	`jnl`	Variant information systems for precision oncology. BMC Medical Informatics Decis. Mak. Johannes Starlinger, Steffen Pallarz, Jurica Seva, Damian Rieke, Christine Sers, Ulrich Keilholz, Ulf Leser
2018	—	`conf`	WBI at CLEF eHealth 2018 Task 1: Language-independent ICD-10 Coding using Multi-lingual Embeddings and Recurrent Neural Networks. CLEF (Working Notes) Jurica Seva, Mario Sänger, Ulf Leser
2017	Misc	`conf`	Benchmarking Univariate Time Series Classifiers. BTW Patrick Schäfer, Ulf Leser
2017	J	`jnl`	Comparative assessment of differential network analysis methods. Briefings Bioinform. Yvonne Lichtblau, Karin Zimmermann, Berit Haldemann, Dido Lenze, Michael Hummel, Ulf Leser
2017	J	`jnl`	Computation semantics of the functional scientific workflow language Cuneiform. J. Funct. Program. Jörgen Brandt, Wolfgang Reisig, Ulf Leser
2017	J	`jnl`	Deep learning with word embeddings improves biomedical named entity recognition. Bioinform. Maryam Habibi, Leon Weber, Mariana L. Neves, David Luis Wiegandt, Ulf Leser
2017	J	`jnl`	Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization. BMC Syst. Biol. Saskia Trescher, Jannes Münchmeyer, Ulf Leser
2017	B	`conf`	Exact and Approximate Algorithms for Finding k-Shortest Paths with Limited Overlap. EDBT Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser
2017	A	`conf`	Fast and Accurate Time Series Classification with WEASEL. CIKM Patrick Schäfer, Ulf Leser
2017	J	`jnl`	Fast and Accurate Time Series Classification with WEASEL. CoRR Patrick Schäfer, Ulf Leser
2017	C	`conf`	Fine-Grained Opinion Mining from Mobile App Reviews with Word Embedding Features. NLDB Mario Sänger, Ulf Leser, Roman Klinger
2017	B	`conf`	Hi-WAY: Execution of Scientific Workflows on Hadoop YARN. EDBT Marc Bux, Jörgen Brandt, Carl Witt, Jim Dowling, Ulf Leser
2017	J	`jnl`	How to improve information extraction from German medical records. it Inf. Technol. Johannes Starlinger, Madeleine Kittner, Oliver Blankenstein, Ulf Leser
2017	B	`conf`	Modeling Data Flow Execution in a Parallel Environment. DaWaK Georgia Kougka, Anastasios Gounaris, Ulf Leser
2017	—	`conf`	Multi-lingual ICD-10 Coding using a Hybrid rule-based and Supervised Classification Approach at CLEF eHealth 2017. CLEF (Working Notes) Jurica Seva, Madeleine Kittner, Roland Roller, Ulf Leser
2017	J	`jnl`	Multivariate Time Series Classification with WEASEL+MUSE. CoRR Patrick Schäfer, Ulf Leser
2017	J	`jnl`	Optimization of Complex Dataflows with User-Defined Functions. ACM Comput. Surv. Astrid Rheinländer, Ulf Leser, Goetz Graefe
2016	—	`conf`	Cache-Sensitive Skip List: Efficient Range Queries on Modern CPUs. ADMS/IMDM@VLDB Stefan Sprenger, Steffen Zeuch, Ulf Leser
2016	J	`jnl`	Effective and efficient similarity search in scientific workflow repositories. Future Gener. Comput. Syst. Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser
2016	J	`jnl`	Fast Sampling-Based Whole-Genome Haplotype Block Recognition. IEEE ACM Trans. Comput. Biol. Bioinform. Daniel Taliun, Johann Gamper, Ulf Leser, Cristian Pattaro
2016	—	`conf`	Graph n-grams for Scientific Workflow Similarity Search. LWDA David Luis Wiegandt, Johannes Starlinger, Ulf Leser
2016	B	`conf`	PIEJoin: Towards Parallel Set Containment Joins. SSDBM Anja Kunkel, Astrid Rheinländer, Christopher Schiefer, Sven Helmer, Panagiotis Bouros, Ulf Leser
2016	—	`conf`	Performance of Gene Name Recognition Tools on Patents. SMBM Maryam Habibi, David Luis Wiegandt, Florian Schmedding, Ulf Leser
2016	—	`conf`	Potential and Pitfalls of Domain-Specific Information Extraction at Web Scale. SIGMOD Conference Astrid Rheinländer, Mario Lehmann, Anja Kunkel, Jörg Meier, Ulf Leser
2016	J	`jnl`	Recognizing chemicals in patents: a comparative analysis. J. Cheminformatics Maryam Habibi, David Luis Wiegandt, Florian Schmedding, Ulf Leser
2016	B	`conf`	SCARE ― The Sentiment Corpus of App Reviews with Fine-grained Annotations in German. LREC Mario Sänger, Ulf Leser, Steffen Kemmerer, Peter Adolphs, Roman Klinger
2016	J	`jnl`	SETH detects and normalizes genetic variants in text. Bioinform. Philippe Thomas, Tim Rocktäschel, Jörg Hakenberg, Yvonne Lichtblau, Ulf Leser
2016	J	`jnl`	SoFIA: a data integration framework for annotating high-throughput datasets. Bioinform. Liam Harold Childs, Soulafa Mamlouk, Jörgen Brandt, Christine Sers, Ulf Leser
2016	J	`jnl`	graphANNIS: A Fast Query Engine for Deeply Annotated Linguistic Corpora. J. Lang. Technol. Comput. Linguistics Thomas Krause, Ulf Leser, Anke Lüdeling
2015	—	`conf`	Alternative routing: k-shortest paths with limited overlap. SIGSPATIAL/GIS Theodoros Chondrogiannis, Panagiotis Bouros, Johann Gamper, Ulf Leser
2015	—	`conf`	BiobankCloud: A Platform for the Secure Storage, Sharing, and Processing of Large Biomedical Data Sets. Big-O(Q)/DMAH@VLDB Alysson Bessani, Jörgen Brandt, Marc Bux, Vinicius Vielmo Cogo, Lora Dimitrova, Jim Dowling, Ali Gholami, Kamal Hakimzadeh, Michael Hummel, Mahmoud Ismail, Erwin Laure, Ulf Leser, Jan-Eric Litton, Roxanna Martinez, Salman Niazi, Jane Reichel, Karin Zimmermann
2015	J	`jnl`	Computer-assisted curation of a human regulatory core network from the biological literature. Bioinform. Philippe Thomas, Pawel Durek, Illés Solt, Bertram Klinger, Franziska Witzel, Pascal Schulthess, Yvonne Mayer, Domonkos Tikk, Nils Blüthgen, Ulf Leser
2015	—	`conf`	Cuneiform: a Functional Language for Large Scale Scientific Data Analysis. EDBT/ICDT Workshops Jörgen Brandt, Marc Bux, Ulf Leser
2015	J	`jnl`	DynamicCloudSim: Simulating heterogeneity in computational clouds. Future Gener. Comput. Syst. Marc Bux, Ulf Leser
2015	J	`jnl`	MRCSI: Compressing and Searching String Collections with Multiple References. Proc. VLDB Endow. Sebastian Wandelt, Ulf Leser
2015	—	`conf`	Massively Parallel Analysis of Similarity Matrices on Heterogeneous Hardware. EDBT/ICDT Workshops Tobias Rawald, Mike Sips, Norbert Marwan, Ulf Leser
2015	J	`jnl`	SAASFEE: Scalable Scientific Workflow Execution Engine. Proc. VLDB Endow. Marc Bux, Jörgen Brandt, Carsten Lipka, Kamal Hakimzadeh, Jim Dowling, Ulf Leser
2015	J	`jnl`	SOFA: An extensible logical optimizer for UDF-heavy data flows. Inf. Syst. Astrid Rheinländer, Arvid Heise, Fabian Hueske, Ulf Leser, Felix Naumann
2014	J	`jnl`	A survey on annotation tools for the biomedical literature. Briefings Bioinform. Mariana L. Neves, Ulf Leser
2014	J	`jnl`	CellFinder: a cell data repository. Nucleic Acids Res. Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz
2014	—	`conf`	Extracting and aggregating temporal events from text. WWW (Companion Volume) Lars Döhling, Ulf Leser
2014	—	`conf`	Layer Decomposition: An Effective Structure-Based Approach for Scientific Workflow Similarity. eScience Johannes Starlinger, Sarah Cohen Boulakia, Sanjeev Khanna, Susan B. Davidson, Ulf Leser
2014	—	`conf`	Next Generation Data Integration (for the Life Sciences). Grundlagen von Datenbanken Ulf Leser
2014	—	`conf`	RRCA: Ultra-Fast Multiple In-species Genome Alignments. AlCoB Sebastian Wandelt, Ulf Leser
2014	J	`jnl`	Similarity Search for Scientific Workflows. Proc. VLDB Endow. Johannes Starlinger, Bryan Brancotte, Sarah Cohen Boulakia, Ulf Leser
2014	J	`jnl`	State-of-the-art in string similarity search and join. SIGMOD Rec. Sebastian Wandelt, Dong Deng, Stefan Gerdjikov, Shashwat Mishra, Petar Mitankin, Manish Patil, Enrico Siragusa, Alexander Tiskin, Wei Wang, Jiaying Wang, Ulf Leser
2014	J	`jnl`	The Stratosphere platform for big data analytics. VLDB J. Alexander Alexandrov, Rico Bergmann, Stephan Ewen, Johann-Christoph Freytag, Fabian Hueske, Arvid Heise, Odej Kao, Marcus Leich, Ulf Leser, Volker Markl, Felix Naumann, Mathias Peters, Astrid Rheinländer, Matthias J. Sax, Sebastian Schelter, Mareike Höger, Kostas Tzoumas, Daniel Warneke
2014	—	`conf`	Versatile optimization of UDF-heavy data flows with sofa. SIGMOD Conference Astrid Rheinländer, Martin Beckmann, Anja Kunkel, Arvid Heise, Thomas Stoltmann, Ulf Leser
2013	J	`jnl`	A detailed error analysis of 13 kernel methods for protein-protein interaction extraction. BMC Bioinform. Domonkos Tikk, Illés Solt, Philippe Thomas, Ulf Leser
2013	J	`jnl`	CELDA - an ontology for the comprehensive representation of cells in complex systems. BMC Bioinform. Stefanie Seltmann, Harald Stachelscheid, Alexander Damaschun, Ludger Jansen, Fritz Lekschas, Jean-Fred Fontaine, Throng-Nghia Nguyen-Dobinsky, Ulf Leser, Andreas Kurtz
2013	A*	`conf`	CPU and cache efficient management of memory-resident databases. ICDE Holger Pirk, Florian Funke, Martin Grund, Thomas Neumann, Ulf Leser, Stefan Manegold, Alfons Kemper, Martin L. Kersten
2013	—	`conf`	DynamicCloudSim: simulating heterogeneity in computational clouds. SWEET@SIGMOD Marc Bux, Ulf Leser
2013	Misc	`conf`	Experiences from Developing the Domain-Specific Entity Search Engine GeneView. BTW Philippe Thomas, Johannes Starlinger, Ulf Leser
2013	J	`jnl`	FRESCO: Referential Compression of Highly Similar Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. Sebastian Wandelt, Ulf Leser
2013	—	`conf`	OmixAnalyzer - A Web-Based System for Management and Analysis of High-Throughput Omics Data Sets. DILS Thomas Stoltmann, Karin Zimmermann, André Koschmieder, Ulf Leser
2013	J	`jnl`	Parallelization in Scientific Workflow Management Systems CoRR Marc Bux, Ulf Leser
2013	J	`jnl`	Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. Database J. Biol. Databases Curation Mariana L. Neves, Alexander Damaschun, Nancy Mah, Fritz Lekschas, Stefanie Seltmann, Harald Stachelscheid, Jean-Fred Fontaine, Andreas Kurtz, Ulf Leser
2013	C	`conf`	QGramProjector: Q-Gram Projection for Indexing Highly-Similar Strings. ADBIS Sebastian Wandelt, Ulf Leser
2013	J	`jnl`	RCSI: Scalable similarity search in thousand(s) of genomes. Proc. VLDB Endow. Sebastian Wandelt, Johannes Starlinger, Marc Bux, Ulf Leser
2013	J	`jnl`	SOFA: An Extensible Logical Optimizer for UDF-heavy Dataflows. CoRR Astrid Rheinländer, Arvid Heise, Fabian Hueske, Ulf Leser, Felix Naumann
2013	J	`jnl`	Using ontologies to study cell transitions. J. Biomed. Semant. Georg Fuellen, Ludger Jansen, Ulf Leser, Andreas Kurtz
2013	—	`conf`	WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting. SemEval@NAACL-HLT Philippe Thomas, Mariana L. Neves, Tim Rocktäschel, Ulf Leser
2013	—	`conf`	WBI-NER: The impact of domain-specific features on the performance of identifying and classifying mentions of drugs. SemEval@NAACL-HLT Tim Rocktäschel, Torsten Huber, Michael Weidlich, Ulf Leser
2012	B	`conf`	(Re)Use in Public Scientific Workflow Repositories. SSDBM Johannes Starlinger, Sarah Cohen Boulakia, Ulf Leser
2012	J	`jnl`	Adaptive efficient compression of genomes. Algorithms Mol. Biol. Sebastian Wandelt, Ulf Leser
2012	J	`jnl`	ChemSpot: a hybrid system for chemical named entity recognition. Bioinform. Tim Rocktäschel, Michael Weidlich, Ulf Leser
2012	J	`jnl`	Data Management Challenges in Next Generation Sequencing. Datenbank-Spektrum Sebastian Wandelt, Astrid Rheinländer, Marc Bux, Lisa Thalheim, Berit Haldemann, Ulf Leser
2012	A	`conf`	Discovering conditional inclusion dependencies. CIKM Jana Bauckmann, Ziawasch Abedjan, Ulf Leser, Heiko Müller, Felix Naumann
2012	B	`conf`	Efficient Similarity Search in Very Large String Sets. SSDBM Dandy Fenz, Dustin Lange, Astrid Rheinländer, Felix Naumann, Ulf Leser
2012	J	`jnl`	GeneView: a comprehensive semantic search engine for PubMed. Nucleic Acids Res. Philippe Thomas, Johannes Starlinger, Alexander Vowinkel, Sebastian Arzt, Ulf Leser
2012	J	`jnl`	Improving data quality by source analysis. ACM J. Data Inf. Qual. Heiko Müller, Johann Christoph Freytag, Ulf Leser
2012	—	`conf`	InterOnto - Ranking Inter-Ontology Links. DILS Silke Trißl, Philipp Hussels, Ulf Leser
2012	B	`conf`	Regular Path Queries on Large Graphs. SSDBM André Koschmieder, Ulf Leser
2012	—	`conf`	String Searching in Referentially Compressed Genomes. KDIR Sebastian Wandelt, Ulf Leser
2012	J	`jnl`	Tools for managing and analyzing microarray data. Briefings Bioinform. André Koschmieder, Karin Zimmermann, Silke Trißl, Thomas Stoltmann, Ulf Leser
2011	J	`jnl`	BioCreative III interactive task: an overview. BMC Bioinform. Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu
2011	J	`jnl`	Molecular Event Extraction from Link Grammar Parse Trees in the BioNLP'09 Shared Task. Comput. Intell. Jörg Hakenberg, Illés Solt, Domonkos Tikk, Nguyen Ha Vo, Luis Tari, Quang Long Nguyen, Chitta Baral, Ulf Leser
2011	A*	`conf`	Next generation data integration for Life Sciences. ICDE Sarah Cohen Boulakia, Ulf Leser
2011	—	`conf`	Not all links are equal: Exploiting Dependency Types for the Extraction of Protein-Protein Interactions from Text. BioNLP@ACL Philippe Thomas, Stefan Pietschmann, Illés Solt, Domonkos Tikk, Ulf Leser
2011	—	`conf`	Pipa: custom integration of protein interactions and pathways. GI-Jahrestagung Sebastian Arzt, Johannes Starlinger, Oliver Arnold, Stefan Kroeger, Samira Jaeger, Ulf Leser
2011	—	`conf`	Scalable Sequence Similarity Search and Join in Main Memory on Multi-cores. Euro-Par Workshops (2) Astrid Rheinländer, Ulf Leser
2011	J	`jnl`	Search, adapt, and reuse: the future of scientific workflows. SIGMOD Rec. Sarah Cohen Boulakia, Ulf Leser
2010	J	`jnl`	A Comprehensive Benchmark of Kernel Methods to Extract Protein-Protein Interactions from Literature. PLoS Comput. Biol. Domonkos Tikk, Philippe Thomas, Peter Palaga, Jörg Hakenberg, Ulf Leser
2010	J	`jnl`	A fast and effective dependency graph kernel for PPI relation extraction. BMC Bioinform. Domonkos Tikk, Peter Palaga, Ulf Leser
2010	—	`conf`	An urban health risk analysis for Berlin: exploration and integration of spatio-temporal information on the urban environment. EnviroInfo Tobia Lakes, Ulf Leser, Cornelius Senf
2010	J	`jnl`	Deep Web Integration with VisQI. Proc. VLDB Endow. Thomas Kabisch, Eduard Constantin Dragut, Clement T. Yu, Ulf Leser
2010	—	`conf`	Estimating Result Size and Execution Times for Graph Queries. ADBIS (Local Proceedings) Silke Trißl, Ulf Leser
2010	A*	`conf`	Graph-based concept identification and disambiguation for enterprise search. WWW Falk Brauer, Michael Huber, Gregor Hackenbroich, Ulf Leser, Felix Naumann, Wojciech M. Barczynski
2010	J	`jnl`	Phenoclustering: online mining of cross-species phenotypes. Bioinform. Philip Groth, Ivan Kalev, Ivaylo Kirov, Borislav Traikov, Ulf Leser, Bertram Weiss
2010	B	`conf`	Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data. SSDBM Astrid Rheinländer, Martin Knobloch, Nicky Hochmuth, Ulf Leser
2010	—	`conf`	Selecting Materialized Views for RDF Data. ICWE Workshops Roger Castillo, Ulf Leser
2010	J	`jnl`	Simple tricks for improving pattern-based information extraction from the biomedical literature. J. Biomed. Semant. Quang Long Nguyen, Domonkos Tikk, Ulf Leser
2010	J	`jnl`	Species identification for gene name normalization. BMC Bioinform. Illés Solt, Domonkos Tikk, Ulf Leser
2009	J	`jnl`	A Hierarchical Approach to Model Web Query Interfaces for Web Source Integration. Proc. VLDB Endow. Thomas Kabisch, Eduard Constantin Dragut, Clement T. Yu, Ulf Leser
2009	—	`conf`	A Machine Learning Approach to Foreign Key Discovery. WebDB Alexandra Rostin, Oliver Albrecht, Jana Bauckmann, Felix Naumann, Ulf Leser
2009	—	`conf`	Exploiting scientific workflows for large-scale gene expression data analysis. ISCIS Alessandro De Stasio, Marcus Ertelt, Wolfgang Kemmner, Ulf Leser, Michele Ceccarelli
2009	—	`ch.`	Graph Management in the Life Sciences. Encyclopedia of Database Systems Ulf Leser, Silke Trißl
2009	Misc	`conf`	Graph-Based Ontology Construction from Heterogenous Evidences. ISWC Christoph Böhm, Philip Groth, Ulf Leser
2009	B	`conf`	High-performance information extraction with AliBaba. EDBT Peter Palaga, Long Nguyen, Ulf Leser, Jörg Hakenberg
2009	—	`conf`	Molecular event extraction from Link Grammar parse trees. BioNLP@HLT-NAACL (Shared Task) Jörg Hakenberg, Illés Solt, Domonkos Tikk, Luis Tari, Astrid Rheinländer, Quang Long Nguyen, Graciela Gonzalez, Ulf Leser
2009	—	`conf`	SOA-Based Integration of Text Mining Services. SERVICES I Johannes Starlinger, Florian Leitner, Alfonso Valencia, Ulf Leser
2009	—	`ch.`	Semantic Data Integration for Life Science Entities. Encyclopedia of Database Systems Ulf Leser
2009	—	`ch.`	Word Sense Disambiguation in Biomedical Applications. Information Retrieval in Biomedicine Torsten Schiemann, Ulf Leser, Jörg Hakenberg
2008	—	`conf`	08131 Executive Summary -- Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives. Ontologies and Text Mining for Life Sciences Michael Ashburner, Ulf Leser, Dietrich Rebholz-Schuhmann
2008	J	`jnl`	A Flexible Framework for Integrating Annotations from Different Tools and Tag Sets. Trait. Autom. des Langues Christian Chiarcos, Stefanie Dipper, Michael Götze, Ulf Leser, Anke Lüdeling, Julia Ritz, Manfred Stede
2008	J	`jnl`	Integrating protein-protein interactions and text mining for protein function prediction. BMC Bioinform. Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann
2008	—	`conf`	Mining Phenotypes for Protein Function Prediction. Ontologies and Text Mining for Life Sciences Ulf Leser, Philip Groth, Bertram Weiss, Hans-Dieter Pohlenz
2008	J	`jnl`	Mining phenotypes for gene function prediction. BMC Bioinform. Philip Groth, Bertram Weiss, Hans-Dieter Pohlenz, Ulf Leser
2008	—	`ed.`	Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03. - 28.03.2008 Ontologies and Text Mining for Life Sciences Michael Ashburner, Ulf Leser, Dietrich Rebholz-Schuhmann
2008	B	`conf`	Querying Distributed RDF Data Sources with SPARQL. ESWC Bastian Quilitz, Ulf Leser
2007	A*	`conf`	Efficiently Detecting Inclusion Dependencies. ICDE Jana Bauckmann, Ulf Leser, Felix Naumann, Veronique Tietz
2007	—	`conf`	Fast and practical indexing and querying of very large graphs. SIGMOD Conference Silke Trißl, Ulf Leser
2007	—	`conf`	High-Precision Function Prediction using Conserved Interactions. German Conference on Bioinformatics Samira Jaeger, Ulf Leser
2007	—	`book`	Informationsintegration - Architekturen und Methoden zur Integration verteilter und heterogener Datenquellen. Ulf Leser, Felix Naumann
2007	—	`conf`	What's New? What's Certain? - Scoring Search Results in the Presence of Overlapping Data Sources. DILS Philipp Hussels, Silke Trißl, Ulf Leser
2006	J	`jnl`	A structural keystone for drug design. J. Integr. Bioinform. Kristian Rother, Mathias Dunkel, Elke Michalsky, Silke Trißl, Andrean Goede, Ulf Leser, Robert Preissner
2006	J	`jnl`	ALIBABA: PubMed as a graph. Bioinform. Conrad Plake, Torsten Schiemann, Marcus Pankalla, Jörg Hakenberg, Ulf Leser
2006	J	`jnl`	Adapters, shims, and glue - service interoperability for Bioinform. Uwe Radetzki, Ulf Leser, S. C. Schulze-Rauschenbach, Jörg Zimmermann, Jens Lüssem, Thomas Bode, Armin B. Cremers
2006	—	`conf`	Classification of Contradiction Patterns. GfKl Heiko Müller, Ulf Leser, Johann Christoph Freytag
2006	—	`conf`	Collecting a Large Corpus from all of Medline. SMBM Jörg Hakenberg, Ulf Leser, Harald Kirsch, Dietrich Rebholz-Schuhmann
2006	—	`ed.`	Data Integration in the Life Sciences, Third International Workshop, DILS 2006, Hinxton, UK, July 20-22, 2006, Proceedings DILS Ulf Leser, Felix Naumann, Barbara A. Eckman
2006	A	`conf`	Describing differences between databases. CIKM Heiko Müller, Johann Christoph Freytag, Ulf Leser
2006	—	`conf`	Efficiently Computing Inclusion Dependencies for Schema Discovery. ICDE Workshops Jana Bauckmann, Ulf Leser, Felix Naumann
2006	—	`conf`	Implementing a Linguistic Query Language for Historic Texts. EDBT Workshops Lukas Faulstich, Ulf Leser, Thorsten Vitt
2006	—	`book`	Informationsintegration: Architekturen und Methoden zur Integration verteilter und heterogener Datenquellen. Ulf Leser, Felix Naumann
2005	A	`conf`	(Almost) Hands-Off Information Integration for the Life Sciences. CIDR Ulf Leser, Felix Naumann
2005	—	`conf`	A query language for biological networks. ECCB/JBI Ulf Leser
2005	J	`jnl`	Columba: an integrated database of proteins, structures, and annotations. BMC Bioinform. Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser
2005	J	`jnl`	Erkennen und Bereinigen von Datenfehlern in naturwissenschaftlichen Daten. Datenbank-Spektrum Heiko Müller, Melanie Weis, Jens Bleiholder, Ulf Leser
2005	J	`jnl`	GandrKB--ontological microarray annotation and visualization. Bioinform. Daniel Schober, Ulf Leser, Martin Zenke, Jens G. Reich
2005	—	`conf`	Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW. DILS Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal, Laure Berti-Équille, Ulf Leser, Fouzia Moussouni
2005	Misc	`conf`	Optimizing syntax patterns for discovering protein-protein interactions. SAC Conrad Plake, Jörg Hakenberg, Ulf Leser
2005	—	`conf`	Querying Ontologies in Relational Database Systems. DILS Silke Trißl, Ulf Leser
2005	J	`jnl`	Systematic feature evaluation for gene name recognition. BMC Bioinform. Jörg Hakenberg, Steffen Bickel, Conrad Plake, Ulf Brefeld, Hagen Zahn, Lukas Faulstich, Ulf Leser, Tobias Scheffer
2005	J	`jnl`	What makes a gene name? Named entity recognition in the biomedical literature. Briefings Bioinform. Ulf Leser, Jörg Hakenberg
2004	—	`conf`	Columba: Multidimensional Data Integration of Protein Annotations. DILS Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser
2004	J	`jnl`	Completeness of integrated information sources. Inf. Syst. Felix Naumann, Johann Christoph Freytag, Ulf Leser
2004	—	`conf`	Cooperative Transaction Processing between Clients and Servers. ADBIS (Local Proceedings) Steffen Jurk, Ulf Leser, José-Luis Marzo
2004	—	`conf`	Data Mining: The Next Generation. Perspectives Workshop: Data Mining: The Next Generation Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra
2004	—	`conf`	Mining for Patterns in Contradictory Data. IQIS Heiko Müller, Ulf Leser, Johann Christoph Freytag
2003	J	`jnl`	Integration molekularbiologischer Daten. Datenbank-Spektrum Ulf Leser, Peter Rieger
2000	C	`conf`	Query Planning with Information Quality Bounds. FQAS Ulf Leser, Felix Naumann
2000	—	`—`	Query planning in mediator based information systems. Ulf Leser
2000	—	`conf`	Strategies for the Conceptual Design of Federated Information Systems. EFIS Susanne Busse, Ralf-Detlef Kutsche, Ulf Leser
1999	—	`ed.`	4. Workshop Föderierte Datenbanken, Berlin, Germany, November 25-26, 1999 Föderierte Datenbanken Ralf-Detlef Kutsche, Ulf Leser, Johann Christoph Freytag
1999	J	`jnl`	A proposal for a standard CORBA interface for genome maps. Bioinform. Emmanuel Barillot, Ulf Leser, Philip Lijnzaad, Christophe Cussat-Blanc, Kim Jungfer, Frédéric Guyon, Guy Vaysseix, Carsten Helgesen, Patricia Rodriguez-Tomé
1999	A	`conf`	Constructing IDL Views on Relational Databases. CAiSE Kim Jungfer, Ulf Leser, Patricia Rodriguez-Tomé
1999	—	`conf`	Density Scores for Cooperative Query Answering. Föderierte Datenbanken Felix Naumann, Ulf Leser
1999	Misc	`conf`	Designing a Global Information Resource for Molecular Biology. BTW Ulf Leser
1999	J	`jnl`	EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. Bioinform. Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
1999	—	`conf`	Globale Anfragebearbeitung mit verteilten und heterogenen Datenquellen. GI Jahrestagung Ulf Leser
1999	J	`jnl`	IXDB, an X chromosome integrated database (update). Nucleic Acids Res. Ulf Leser, Hugues Roest Crollius, Hans Lehrach, Ralf Sudbrak
1999	—	`conf`	Integration durch Standards: Erfahrungen mit CORBA in Life Science Research. Föderierte Datenbanken Heiko Müller, Ulf Leser
1999	A*	`conf`	Quality-driven Integration of Heterogenous Information Systems. VLDB Felix Naumann, Ulf Leser, Johann Christoph Freytag
1998	—	`conf`	Combining Heterogeneous Data Sources through Query Correspondence Assertions. Workshop on Web Information and Data Management Ulf Leser
1998	—	`conf`	Design Issues of Database Access in a CORBA Environment. Workshop Integration heterogener Softwaresysteme Ulf Leser, Stefan Tai, Susanne Busse
1998	—	`conf`	EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation. German Conference on Bioinformatics Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
1998	J	`jnl`	IXDB, an X chromosome integrated database. Nucleic Acids Res. Ulf Leser, Robert Wagner, Andrei Grigoriev, Hans Lehrach, Hugues Roest Crollius
1998	J	`jnl`	Issues in developing integrated genomic databases and application to the human X chromosome. Bioinform. Ulf Leser, Hans Lehrach, Hugues Roest Crollius
1998	—	`conf`	Query Mediation for Heterogeneous Data Sources. Föderierte Datenbanken Ulf Leser
1997	J	`jnl`	Ansätze zur Föderation moleklargenetischer Datenbanken. Datenbank Rundbr. Ulf Leser
1997	—	`conf`	IXDB, an integrated database for genomic data of the Human X Chromosome. German Conference on Bioinformatics Ulf Leser, Robert Wagner, Hans Lehrach, Hugues Roest Crollius