Ugo Bastolla

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score.
Bioinform.
Ugo Bastolla, David Abia, Oscar Piette
2023 J jnl
Predicting protein stability changes upon mutation using a simple orientational potential.
Bioinform.
Iván Martín Hernández, Yves Dehouck, Ugo Bastolla, José Ramón López-Blanco, Pablo Chacón
2022 J jnl
Local Normal Mode Analysis for Fast Loop Conformational Sampling.
J. Chem. Inf. Model.
José Ramón López-Blanco, Yves Dehouck, Ugo Bastolla, Pablo Chacón
2019 J jnl
Can Conformational Changes of Proteins Be Represented in Torsion Angle Space? A Study with Rescaled Ridge Regression.
J. Chem. Inf. Model.
Ugo Bastolla, Yves Dehouck
2019 J jnl
Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery.
Bioinform.
Alvaro Alfayate, Carlos Rodriguez Caceres, Helena G. Dos Santos, Ugo Bastolla
2016 J jnl
Learning protein folding and evolution with a snake puzzle.
PeerJ Prepr.
Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García
2016 J jnl
Learning structural bioinformatics and evolution with a snake puzzle.
PeerJ Comput. Sci.
Gonzalo S. Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García
2013 J jnl
Protein evolution along phylogenetic histories under structurally constrained substitution models.
Bioinform.
Miguel Arenas, Helena G. Dos Santos, David Posada, Ugo Bastolla
2010 J jnl
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH.
BMC Bioinform.
Florian Teichert, Jonas Minning, Ugo Bastolla, Markus Porto
2010 J jnl
Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations.
PLoS Comput. Biol.
Raul Mendez, Miriam Fritsche, Markus Porto, Ugo Bastolla
2009 J jnl
Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures.
PLoS Comput. Biol.
Alberto Pascual-García, David Abia, Angel R. Ortiz, Ugo Bastolla
2008 — conf
Protein Structure Alignment through a Contact Topology Profile using SABERTOOTH.
German Conference on Bioinformatics
Florian Teichert, Ugo Bastolla, Markus Porto
2007 J jnl
SABERTOOTH: protein structural alignment based on a vectorial structure representation.
BMC Bioinform.
Florian Teichert, Ugo Bastolla, Markus Porto
2005 J jnl
A Framework for Protein Structure Prediction on the Grid.
New Gener. Comput.
Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente
2004 J jnl
Computational Proteomics on the Grid.
New Gener. Comput.
Eduardo Huedo, Ugo Bastolla, Rubén S. Montero, Ignacio Martín Llorente