Tsuyoshi Hamada

29 papers A 3B 2C 3Misc 3Journal 12Unranked 6

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment. PLoS Comput. Biol. Mai Chan Lau, Jennifer Borowsky, Juha P. Väyrynen, Koichiro Haruki, Melissa Zhao, Andressa Dias Costa, Simeng Gu, Annacarolina Da Silva, Tomotaka Ugai, Kota Arima, Minh N. Nguyen, Yasutoshi Takashima, Joe Yeong, David Tai, Tsuyoshi Hamada, Jochen K. Lennerz, Charles S. Fuchs, Catherine J. Wu, Jeffrey A. Meyerhardt, Shuji Ogino, Jonathan A. Nowak
2017	J	`jnl`	Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela
2016	J	`jnl`	MrBayes tgMC IEEE ACM Trans. Comput. Biol. Bioinform. Cheng Ling, Tsuyoshi Hamada, Jing-Yang Gao, Guoguang Zhao, Donghong Sun, Weifeng Shi
2015	J	`jnl`	An Open Approach to Autonomous Vehicles. IEEE Micro Shinpei Kato, Eijiro Takeuchi, Yoshio Ishiguro, Yoshiki Ninomiya, Kazuya Takeda, Tsuyoshi Hamada
2015	B	`conf`	Optimizing the Bayesian Inference of Phylogeny on Graphic Processors. CCGRID Cheng Ling, Chunbao Zhou, Arong Luo, Guoguang Zhao, Tsuyoshi Hamada, Xiaoyan Zhu
2014	J	`jnl`	A GRASS GIS parallel module for radio-propagation predictions. CoRR Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec
2014	J	`jnl`	A GRASS GIS parallel module for radio-propagation predictions. Int. J. Geogr. Inf. Sci. Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec
2013	C	`conf`	Up to 700k GPU Cores, Kepler, and the Exascale Future for Simulations of Star Clusters Around Black Holes. ISC Peter Berczik, Rainer Spurzem, Shiyan Zhong, Long Wang, Keigo Nitadori, Tsuyoshi Hamada, Alexander Veles
2012	J	`jnl`	High performance phylogenetic analysis on CUDA-compatible GPUs. SIGARCH Comput. Archit. News Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
2011	—	`conf`	Astrophysical SPH Simulations with raceSPH Library. CSE Lei Liu, Guillermo Marcus Martinez, Peter Berczik, Tsuyoshi Hamada, Ingo Berentzen, Andreas Kugel, Reinhard Männer, Robi Banerjee, Ralf Klessen, Rainer Spurzem
2011	J	`jnl`	Astrophysical particle simulations with large custom GPU clusters on three continents. Comput. Sci. Res. Dev. Rainer Spurzem, Peter Berczik, Ingo Berentzen, Keigo Nitadori, Tsuyoshi Hamada, Guillermo Marcus Martinez, Andreas Kugel, Reinhard Männer, J. Fiestas, Robi Banerjee, Ralf Klessen
2011	J	`jnl`	Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Comput. Phys. Commun. Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada
2010	A	`conf`	190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs. SC Tsuyoshi Hamada, Keigo Nitadori
2010	J	`jnl`	Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs CoRR Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba
2010	—	`conf`	Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs. ASAP Keisuke Dohi, Khaled Benkrid, Cheng Ling, Tsuyoshi Hamada, Yuichiro Shibata
2010	J	`jnl`	Implementation of a programming environment with a multithread model for reconfigurable systems. SIGARCH Comput. Archit. News Keisuke Dohi, Yuichiro Shibata, Tsuyoshi Hamada, Tomonari Masada, Kiyoshi Oguri, Duncan A. Buell
2009	A	`conf`	42 TFlops hierarchical SC Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji
2009	—	`conf`	A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji
2009	J	`jnl`	A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji
2009	—	`conf`	A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs. SASP Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
2009	C	`conf`	Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices. IEA/AIE Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
2009	—	`conf`	Accelerating Phase Correlation Functions Using GPU and FPGA. AHS Kentaro Matsuo, Tsuyoshi Hamada, Masayuki Miyoshi, Yuichiro Shibata, Kiyoshi Oguri
2009	—	`conf`	Bag of Timestamps: A Simple and Efficient Bayesian Chronological Mining. APWeb/WAIM Tomonari Masada, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
2009	C	`conf`	Bayesian Multi-topic Microarray Analysis with Hyperparameter Reestimation. ADMA Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
2009	A	`conf`	Dynamic hyperparameter optimization for bayesian topical trend analysis. CIKM Tomonari Masada, Daiji Fukagawa, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri
2005	Misc	`conf`	Astrophysical Hydrodynamics Simulations on a Reconfigurable System. FCCM Naohito Nakasato, Tsuyoshi Hamada
2005	Misc	`conf`	Massively Parallel Processors Generator for Reconfigurable System. FCCM Tsuyoshi Hamada, Naohito Nakasato
2005	B	`conf`	PGR: A Software Package for Reconfigurable Super-Computing. FPL Tsuyoshi Hamada, Naohito Nakasato
1998	Misc	`conf`	PROGRAPE-1: A Programmable Special-Purpose Computer for Many-Body Simulations. FCCM Tsuyoshi Hamada, Toshiyuki Fukushige, Atsushi Kawai, Junichiro Makino