Trevor Cohen - RankMe

152 papers A* 3B 2C 1Misc 33Journal 83Unranked 30

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	"Is There Anything Else?": Examining Administrator Influence on Linguistic Features from the Cookie Theft Picture Description Cognitive Test. CoRR Changye Li, Zhecheng Sheng, Trevor Cohen, Serguei Pakhomov
2025	J	`jnl`	Are LLM-generated plain language summaries truly understandable? A large-scale crowdsourced evaluation. CoRR Yue Guo, Jae Ho Sohn, Gondy Leroy, Trevor Cohen
2025	J	`jnl`	Bigger But Not Better: Small Neural Language Models Outperform Large Language Models in Detection of Thought Disorder. CoRR Changye Li, Weizhe Xu, Serguei Pakhomov, Ellen Bradley, Dror Ben-Zeev, Trevor Cohen
2025	J	`jnl`	Can Language Models Understand Social Behavior in Clinical Conversations? CoRR Manas Satish Bedmutha, Feng Chen, Andrea L. Hartzler, Trevor Cohen, Nadir Weibel
2025	J	`jnl`	Coherence and comprehensibility: Large language models predict lay understanding of health-related content. J. Biomed. Informatics Trevor Cohen, Weizhe Xu, Yue Guo, Serguei Pakhomov, Gondy Leroy
2025	J	`jnl`	Cultural Prompting Improves the Empathy and Cultural Responsiveness of GPT-Generated Therapy Responses. CoRR Serena Jinchen Xie, Shumenghui Zhai, Yanjing Liang, Jingyi Li, Xuehong Fan, Trevor Cohen, Weichao Yuwen
2025	J	`jnl`	Detecting PTSD in Clinical Interviews: A Comparative Analysis of NLP Methods and Large Language Models. CoRR Feng Chen, Dror Ben-Zeev, Gillian Sparks, Arya Kadakia, Trevor Cohen
2025	—	`conf`	Mitigating Confounding in Speech-Based Dementia Detection through Weight Masking. ACL (1) Zhecheng Sheng, Xiruo Ding, Brian Hur, Changye Li, Trevor Cohen, Serguei V. S. Pakhomov
2025	J	`jnl`	Mitigating Confounding in Speech-Based Dementia Detection through Weight Masking. CoRR Zhecheng Sheng, Xiruo Ding, Brian Hur, Changye Li, Trevor Cohen, Serguei Pakhomov
2025	J	`jnl`	Perplexity and proximity: Large language model perplexity complements semantic distance metrics for the detection of incoherent speech. J. Biomed. Informatics Weizhe Xu, Serguei Pakhomov, Patrick Heagerty, Eric Horvitz, Ellen Bradley, Joshua Woolley, Andrew T. Campbell, Alex S. Cohen, Dror Ben-Zeev, Trevor Cohen
2025	—	`conf`	Quantifying Controversy: A Novel Approach to Detecting Misinformation. MedInfo Oliver Li, Sahiti Myneni, Trevor Cohen
2025	J	`jnl`	Reading Between the Lines: Combining Pause Dynamics and Semantic Coherence for Automated Assessment of Thought Disorder. CoRR Feng Chen, Weizhe Xu, Changye Li, Serguei Pakhomov, Alex Cohen, Simran Bhola, Sandy Yin, Sunny X. Tang, Michael Mackinley, Lena Palaniyappan, Dror Ben-Zeev, Trevor Cohen
2025	J	`jnl`	Tailoring task arithmetic to address bias in models trained on multi-institutional datasets. J. Biomed. Informatics Xiruo Ding, Zhecheng Sheng, Brian Hur, Justin Tauscher, Dror Ben-Zeev, Meliha Yetisgen, Serguei Pakhomov, Trevor Cohen
2024	A*	`conf`	APPLS: Evaluating Evaluation Metrics for Plain Language Summarization. EMNLP Yue Guo, Tal August, Gondy Leroy, Trevor Cohen, Lucy Lu Wang
2024	J	`jnl`	Bridging the Skills Gap: Evaluating an AI-Assisted Provider Platform to Support Care Providers with Empathetic Delivery of Protocolized Therapy. CoRR William R. Kearns, Jessica Bertram, Myra Divina, Lauren Kemp, Yinzhou Wang, Alex Marin, Trevor Cohen, Weichao Yuwen
2024	J	`jnl`	Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang
2024	J	`jnl`	Large language models in biomedicine and health: current research landscape and future directions. J. Am. Medical Informatics Assoc. Zhiyong Lu, Yifan Peng, Trevor Cohen, Marzyeh Ghassemi, Chunhua Weng, Shubo Tian
2024	J	`jnl`	Opportunities for incorporating intersectionality into biomedical informatics. J. Biomed. Informatics Oliver J. Bear Don't Walk IV, Amandalynne Paullada, Avery R. Everhart, Reggie Casanova-Perez, Trevor Cohen, Tiffany C. Veinot
2024	—	`conf`	Personalized Jargon Identification for Enhanced Interdisciplinary Communication. NAACL-HLT Yue Guo, Joseph Chee Chang, Maria Antoniak, Erin Bransom, Trevor Cohen, Lucy Lu Wang, Tal August
2024	J	`jnl`	Reexamining Racial Disparities in Automatic Speech Recognition Performance: The Role of Confounding by Provenance. CoRR Changye Li, Trevor Cohen, Serguei Pakhomov
2024	J	`jnl`	Retrieval augmentation of large language models for lay language generation. J. Biomed. Informatics Yue Guo, Wei Qiu, Gondy Leroy, Sheng Wang, Trevor Cohen
2024	—	`conf`	Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies. ACL (Findings) Changye Li, Zhecheng Sheng, Trevor Cohen, Serguei Pakhomov
2024	J	`jnl`	Too Big to Fail: Larger Language Models are Disproportionately Resilient to Induction of Dementia-Related Linguistic Anomalies. CoRR Changye Li, Zhecheng Sheng, Trevor Cohen, Serguei Pakhomov
2024	J	`jnl`	Toward Automated Detection of Biased Social Signals from the Content of Clinical Conversations. CoRR Feng Chen, Manas Satish Bedmutha, Ray-yuan Chung, Janice Sabin, Wanda Pratt, Brian R. Wood, Nadir Weibel, Andrea L. Hartzler, Trevor Cohen
2024	J	`jnl`	Toward Large Language Models as a Therapeutic Tool: Comparing Prompting Techniques to Improve GPT-Delivered Problem-Solving Therapy. CoRR Daniil Filienko, Yinzhou Wang, Caroline El Jazmi, Serena Jinchen Xie, Trevor Cohen, Martine De Cock, Weichao Yuwen
2024	J	`jnl`	Useful Blunders: Can Automated Speech Recognition Errors Improve Downstream Dementia Classification? CoRR Changye Li, Weizhe Xu, Trevor Cohen, Serguei Pakhomov
2024	J	`jnl`	Useful blunders: Can automated speech recognition errors improve downstream dementia classification? J. Biomed. Informatics Changye Li, Weizhe Xu, Trevor Cohen, Serguei Pakhomov
2023	J	`jnl`	APPLS: A Meta-evaluation Testbed for Plain Language Summarization. CoRR Yue Guo, Tal August, Gondy Leroy, Trevor Cohen, Lucy Lu Wang
2023	J	`jnl`	Backdoor Adjustment of Confounding by Provenance for Robust Text Classification of Multi-institutional Clinical Notes. CoRR Xiruo Ding, Zhecheng Sheng, Meliha Yetisgen, Serguei Pakhomov, Trevor Cohen
2023	J	`jnl`	Deep Representations of First-person Pronouns for Prediction of Depression Symptom Severity. CoRR Xinyang Ren, Hannah A. Burkhardt, Patricia A. Areán, Thomas D. Hull, Trevor Cohen
2023	J	`jnl`	Discerning conversational context in online health communities for personalized digital behavior change solutions using Pragmatics to Reveal Intent in Social Media (PRISM) framework. J. Biomed. Informatics Tavleen Singh, Kirk Roberts, Trevor Cohen, Nathan K. Cobb, Amy Franklin, Sahiti Myneni
2023	J	`jnl`	Enhancing Robustness of Foundation Model Representations under Provenance-related Distribution Shifts. CoRR Xiruo Ding, Zhecheng Sheng, Brian Hur, Feng Chen, Serguei V. S. Pakhomov, Trevor Cohen
2023	J	`jnl`	From benchmark to bedside: transfer learning from social media to patient-provider text messages for suicide risk prediction. J. Am. Medical Informatics Assoc. Hannah A. Burkhardt, Xiruo Ding, Amanda Kerbrat, Katherine Anne Comtois, Trevor Cohen
2023	J	`jnl`	Investigating Generalizability of Speech-based Suicidal Ideation Detection Using Mobile Phones. Proc. ACM Interact. Mob. Wearable Ubiquitous Technol. Arvind Pillai, Subigya Kumar Nepal, Weichen Wang, Matthew Nemesure, Michael V. Heinz, George D. Price, Damien Lekkas, Amanda C. Collins, Tess Griffin, Benjamin Buck, Sarah Masud Preum, Trevor Cohen, Nicholas C. Jacobson, Dror Ben-Zeev, Andrew T. Campbell
2023	J	`jnl`	Personalized Jargon Identification for Enhanced Interdisciplinary Communication. CoRR Yue Guo, Joseph Chee Chang, Maria Antoniak, Erin Bransom, Trevor Cohen, Lucy Lu Wang, Tal August
2023	J	`jnl`	Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. Chethan Jujjavarapu, Pradeep Suri, Vikas Pejaver, Janna Friedly, Laura S. Gold, Eric Meier, Trevor Cohen, Sean D. Mooney, Patrick J. Heagerty, Jeffrey G. Jarvik
2023	J	`jnl`	TRESTLE: Toolkit for Reproducible Execution of Speech, Text and Language Experiments. CoRR Changye Li, Trevor Cohen, Martin Michalowski, Serguei Pakhomov
2023	J	`jnl`	The Power of Speech in the Wild: Discriminative Power of Daily Voice Diaries in Understanding Auditory Verbal Hallucinations Using Deep Learning. Proc. ACM Interact. Mob. Wearable Ubiquitous Technol. Weichen Wang, Weizhe Xu, Ayesha Chander, Subigya Nepal, Benjamin Buck, Serguei Pakhomov, Trevor Cohen, Dror Ben-Zeev, Andrew Campbell
2022	J	`jnl`	CELLS: A Parallel Corpus for Biomedical Lay Language Generation. CoRR Yue Guo, Wei Qiu, Gondy Leroy, Sheng Wang, Trevor Cohen
2022	J	`jnl`	Fully automated detection of formal thought disorder with Time-series Augmented Representations for Detection of Incoherent Speech (TARDIS). J. Biomed. Informatics Weizhe Xu, Weichen Wang, Jake Portanova, Ayesha Chander, Andrew Campbell, Serguei Pakhomov, Dror Ben-Zeev, Trevor Cohen
2022	—	`conf`	GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models. ACL (1) Changye Li, David S. Knopman, Weizhe Xu, Trevor Cohen, Serguei Pakhomov
2022	J	`jnl`	GPT-D: Inducing Dementia-related Linguistic Anomalies by Deliberate Degradation of Artificial Neural Language Models. CoRR Changye Li, David S. Knopman, Weizhe Xu, Trevor Cohen, Serguei Pakhomov
2022	Misc	`conf`	Identifying opportunities for informatics-supported suicide prevention: the case of Caring Contacts. AMIA Hannah A. Burkhardt, Megan Laine, Amanda Kerbrat, Trevor Cohen, Kate Comtois, Andrea L. Hartzler
2022	—	`conf`	Improving Classification of Infrequent Cognitive Distortions: Domain-Specific Model vs. Data Augmentation. NAACL-HLT (Student Research Workshop) Xiruo Ding, Kevin Lybarger, Justin Tauscher, Trevor Cohen
2022	Misc	`conf`	Predicting Drug Blood-Brain Barrier Penetration with Adverse Event Report Embeddings. AMIA Yifan Wu, Justin Mower, Xiruo Ding, Oliver Li, Devika Subramanian, Trevor Cohen
2022	J	`jnl`	The Far Side of Failure: Investigating the Impact of Speech Recognition Errors on Subsequent Dementia Classification. CoRR Changye Li, Trevor Cohen, Serguei Pakhomov
2021	J	`jnl`	Augmenting aer2vec: Enriching distributed representations of adverse event report data with orthographic and lexical information. J. Biomed. Informatics Xiruo Ding, Justin Mower, Devika Subramanian, Trevor Cohen
2021	A*	`conf`	Automated Lay Language Summarization of Biomedical Scientific Reviews. AAAI Yue Guo, Wei Qiu, Yizhong Wang, Trevor Cohen
2021	J	`jnl`	Crossing the "Cookie Theft" Corpus Chasm: Applying What BERT Learns From Outside Data to the ADReSS Challenge Dementia Detection Task. Frontiers Comput. Sci. Yue Guo, Changye Li, Carol Roan, Serguei Pakhomov, Trevor Cohen
2021	J	`jnl`	Quantum Mathematics in Artificial Intelligence. CoRR Dominic Widdows, Kirsty Kitto, Trevor Cohen
2021	J	`jnl`	Quantum Mathematics in Artificial Intelligence. J. Artif. Intell. Res. Dominic Widdows, Kirsty Kitto, Trevor Cohen
2021	J	`jnl`	Should Semantic Vector Composition be Explicit? Can it be Linear. CoRR Dominic Widdows, Kristen Howell, Trevor Cohen
2021	—	`conf`	Transitions Between Electronic and Combustible Cigarettes: A Mixed Methods Analysis of Peer Interactions in an Online Community for Tobacco Cessation. MIE Tavleen Singh, Nathan K. Cobb, Trevor Cohen, Sahiti Myneni
2021	J	`jnl`	Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. J. Biomed. Informatics Scott A. Malec, Peng Wei, Elmer V. Bernstam, Richard D. Boyce, Trevor Cohen
2020	A*	`conf`	A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type. ACL Trevor Cohen, Serguei Pakhomov
2020	J	`jnl`	A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer's Type. CoRR Trevor Cohen, Serguei Pakhomov
2020	J	`jnl`	Automated Lay Language Summarization of Biomedical Scientific Reviews. CoRR Yue Guo, Wei Qiu, Yizhong Wang, Trevor Cohen
2020	—	`conf`	Improving Biomedical Analogical Retrieval with Embedding of Structural Dependencies. BioNLP Amandalynne Paullada, Bethany Percha, Trevor Cohen
2020	J	`jnl`	Retrofitting Vector Representations of Adverse Event Reporting Data to Structured Knowledge to Improve Pharmacovigilance Signal Detection. CoRR Xiruo Ding, Trevor Cohen
2020	J	`jnl`	SCOR: A secure international informatics infrastructure to investigate COVID-19. J. Am. Medical Informatics Assoc. Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif Ozgun Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux
2019	J	`jnl`	Cost-aware active learning for named entity recognition in clinical text. J. Am. Medical Informatics Assoc. Qiang Wei, Yukun Chen, Mandana Salimi, Joshua C. Denny, Qiaozhu Mei, Thomas A. Lasko, Qingxia Chen, Stephen Wu, Amy Franklin, Trevor Cohen, Hua Xu
2019	J	`jnl`	Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text. J. Biomed. Informatics Safa Fathiamini, Amber M. Johnson, Jia Zeng, Vijaykumar Holla, Nora S. Sanchez, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen
2018	B	`conf`	Bringing Order to Neural Word Embeddings with Embeddings Augmented by Random Permutations (EARP). CoNLL Trevor Cohen, Dominic Widdows
2018	Misc	`conf`	Clinical text annotation - what factors are associated with the cost of time? AMIA Qiang Wei, Amy Franklin, Trevor Cohen, Hua Xu
2018	J	`jnl`	DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu
2018	J	`jnl`	Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications. J. Am. Medical Informatics Assoc. Justin Mower, Devika Subramanian, Trevor Cohen
2018	—	`conf`	The Portrayal of Quit Emotions: Content-Sensitive Analysis of Peer Interactions in an Online Community for Smoking Cessation. SBP-BRiMS Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni
2017	J	`jnl`	A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	An active learning-enabled annotation system for clinical named entity recognition. BMC Medical Informatics Decis. Mak. Yukun Chen, Thomas A. Lasko, Qiaozhu Mei, Qingxia Chen, Sungrim Moon, Jingqi Wang, Ky Nguyen, Tolulola Dawodu, Trevor Cohen, Joshua C. Denny, Hua Xu
2017	J	`jnl`	Embedding of semantic predications. J. Biomed. Informatics Trevor Cohen, Dominic Widdows
2017	Misc	`conf`	Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu
2017	J	`jnl`	Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu
2017	J	`jnl`	Measuring content overlap during handoff communication using distributional semantics: An exploratory study. J. Biomed. Informatics Joanna Abraham, Thomas George Kannampallil, Vignesh Srinivasan, William L. Galanter, Gail Tagney, Trevor Cohen
2017	—	`conf`	Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness. MedInfo Zhiguo Yu, Byron C. Wallace, Todd R. Johnson, Trevor Cohen
2017	J	`jnl`	Retrofitting Concept Vector Representations of Medical Concepts to Improve Estimates of Semantic Similarity and Relatedness. CoRR Zhiguo Yu, Byron C. Wallace, Todd R. Johnson, Trevor Cohen
2017	—	`conf`	Temporal Trends of Psychosociobehavioral Factors Underlying Tobacco Use: A Semi-Automated Exploratory Analysis of Peer-to-Peer Communication in a Health-Related Online Community. pHealth Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni
2017	J	`jnl`	Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content. J. Biomed. Informatics Muhammad Amith, Rachel Cunningham, Lara S. Savas, Julie Boom, Roger W. Schvaneveldt, Cui Tao, Trevor Cohen
2016	Misc	`conf`	A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016	Misc	`conf`	A Study of Active Learning for Document Selection in Clinical Named Entity Recognition. AMIA Qiang Wei, Yukun Chen, Sungrim Moon, Trevor Cohen, Hua Xu
2016	Misc	`conf`	Analyzing Similarities in Handoff Communication Content between Residents and Nurses. AMIA Vignesh Srinivasan, Thomas George Kannampallil, Trevor Cohen, Joanna Abraham
2016	J	`jnl`	Automated identification of molecular effects of drugs (AIMED). J. Am. Medical Informatics Assoc. Safa Fathiamini, Amber M. Johnson, Jia Zeng, Alejandro Araya, Vijaykumar Holla, Ann M. Bailey, Beate Litzenburger, Nora S. Sanchez, Yekaterina Khotskaya, Hua Xu, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen
2016	Misc	`conf`	Characterization of Temporal Semantic Shifts of Peer-to-peer Communication in a Health-related Online Community: Implications for Data-driven Health Promotion. AMIA Vishnupriya Sridharan, Trevor Cohen, Nathan K. Cobb, Sahiti Myneni
2016	Misc	`conf`	Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships. AMIA Justin Mower, Devika Subramanian, Ning Shang, Trevor Cohen
2016	Misc	`conf`	Content-specific network analysis of peer-to-peer communication in an online community for smoking cessation. AMIA Sahiti Myneni, Nathan K. Cobb, Trevor Cohen
2016	Misc	`conf`	Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016	J	`jnl`	Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov. J. Am. Medical Informatics Assoc. Jun Xu, Hee-Jin Lee, Jia Zeng, Yonghui Wu, Yaoyun Zhang, Liang-Chin Huang, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Trevor Cohen, Funda Meric-Bernstam, Elmer V. Bernstam, Hua Xu
2016	—	`conf`	Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. QI Trevor Cohen, Dominic Widdows, Jason A. Vander Heiden, Namita T. Gupta, Steven H. Kleinstein
2016	J	`jnl`	Improving the utility of MeSH® terms using the TopicalMeSH representation. J. Biomed. Informatics Zhiguo Yu, Elmer V. Bernstam, Trevor Cohen, Byron C. Wallace, Todd R. Johnson
2016	Misc	`conf`	Literature-Based Discovery of Confounding in Observational Clinical Data. AMIA Scott A. Malec, Peng Wei, Hua Xu, Elmer V. Bernstam, Sahiti Myneni, Trevor Cohen
2016	—	`conf`	Retrofitting Word Vectors of MeSH Terms to Improve Semantic Similarity Measures. Louhi@EMNLP Zhiguo Yu, Trevor Cohen, Byron C. Wallace, Elmer V. Bernstam, Todd R. Johnson
2016	Misc	`conf`	Semantic Relatedness and Similarity between Biomedical Concepts. AMIA Sungrim Moon, Trevor Cohen, Hua Xu
2015	—	`conf`	Embedding Probabilities in Predication Space with Hermitian Holographic Reduced Representations. QI Trevor Cohen, Dominic Widdows
2015	Misc	`conf`	Evaluating the Effects of Cognitive Support on Interpreting ICU Patient Data. AMIA Peter V. Killoran, Swaroop Gantela, Sahiti Myneni, Khalid F. Almoosa, Bela Patel, Thomas George Kannampallil, Vimla L. Patel, Trevor Cohen
2015	—	`conf`	Graded Semantic Vectors: An Approach to Representing Graded Quantities in Generalized Quantum Models. QI Dominic Widdows, Trevor Cohen
2015	Misc	`conf`	Improving Retrieval of PubMed Articles Using the TopicalMeSH Representation. AMIA Zhiguo Yu, Elmer V. Bernstam, Trevor Cohen, Byron C. Wallace, Todd R. Johnson
2015	Misc	`conf`	Real Time Active Learning Study for Clinical Named Entity Recognition. AMIA Yukun Chen, Sungrim Moon, Thomas A. Lasko, Qiaozhu Mei, Jingqi Wang, Trevor Cohen, Qingxia Chen, Joshua C. Denny, Hua Xu
2015	J	`jnl`	Reasoning with vectors: A continuous model for fast robust inference. Log. J. IGPL Dominic Widdows, Trevor Cohen
2015	J	`jnl`	Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature. Database J. Biol. Databases Curation Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Andrew Lawson, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Humberto Lara-Guerra, Beate Litzenburger, Funda Meric-Bernstam, W. Jim Zheng
2014	Misc	`conf`	A study of synonym extraction from clinical texts using semantic vector models. AMIA Sungrim Moon, Trevor Cohen, Hua Xu
2014	J	`jnl`	Evaluating the effects of cognitive support on psychiatric clinical comprehension. Artif. Intell. Medicine Venkata Vijaya Kumar Dalai, Sana Khalid, Dinesh Gottipati, Thomas George Kannampallil, Vineeth John, Brett Blatter, Vimla L. Patel, Trevor Cohen
2014	—	`conf`	Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search. QI Trevor Cohen, Dominic Widdows, Thomas C. Rindflesch
2014	Misc	`conf`	Exploring the Use of SemRep Predications to Help Identify Secondary Drug Targets for Personalized Cancer Therapy. AMIA Safa Fathiamini, Amber M. Johnson, Vijaykumar Holla, Ann M. Bailey, Jia Zeng, Lauren Brusco, Funda Meric-Bernstam, Elmer V. Bernstam, Trevor Cohen
2014	Misc	`conf`	Facilitating Visual Exploration of System-generated Reasoning Pathways underlying Drug-Side effect Relations. AMIA Sahiti Myneni, Trevor Cohen
2014	Misc	`conf`	Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature. AMIA Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen
2014	J	`jnl`	Identifying plausible adverse drug reactions using knowledge extracted from the literature. J. Biomed. Informatics Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen
2014	—	`conf`	Using Ontology Fingerprints to Disambiguate Gene Name Entities in the Biomedical Literature. ICBO Guocai Chen, Jieyi Zhao, Trevor Cohen, Cui Tao, Jingchun Sun, Hua Xu, Elmer V. Bernstam, Jia Zeng, Amber M. Johnson, Vijaykumar Holla, Ann Balley, Funda Meric-Bernstam, W. Jim Zheng
2013	Misc	`conf`	Characterizing the Effects of a Cognitive Support System for Psychiatric Clinical Comprehension Venkata V.K. Dalai, MBBS, MPH, Dinesh Gottipatti, MS. Thomas Kannampallil, MS. Vineeth John, MD, MBA. Trevor Cohen, MBChB, PhD. University of Texas School of Biomedical Informatics1. New York Academy of Medicine2. University of Texas Medical School at Houston3. AMIA Venkata Vijaya Kumar Dalai, Dinesh Gottipati, Thomas George Kannampallil, Trevor Cohen
2013	—	`conf`	Evaluation of Vector Space Models for Medical Disorders Information Retrieval. CLEF (Working Notes) Yaoyun Zhang, Trevor Cohen, Min Jiang, Buzhou Tang, Hua Xu
2013	—	`conf`	Finding Meaning in Social Media: Content-based Social Network Analysis of QuitNet to Identify New Opportunities for Health Promotion. MedInfo Sahiti Myneni, Nathan K. Cobb, Trevor Cohen
2013	B	`conf`	Identifying Persuasive Qualities of Decentralized Peer-to-Peer Online Social Networks in Public Health. PERSUASIVE Sahiti Myneni, M. Sriram Iyengar, Nathan K. Cobb, Trevor Cohen
2013	Misc	`conf`	Individual Attributes of Behavior Change in an Online Social Network. AMIA Sahiti Myneni, Amy Franklin, Nathan K. Cobb, Trevor Cohen
2013	—	`conf`	Orthogonality and Orthography: Introducing Measured Distance into Semantic Space. QI Trevor Cohen, Dominic Widdows, Manuel Wahle, Roger W. Schvaneveldt
2013	Misc	`conf`	Reflective Random Indexing to Develop a Medication-Problem Knowledge Base. AMIA Safa Fathiamini, Trevor Cohen, Allison B. McCoy, Dean F. Sittig
2013	J	`jnl`	Understanding the nature of information seeking behavior in critical care: Implications for the design of health information technology. Artif. Intell. Medicine Thomas George Kannampallil, Amy Franklin, Rashmi Mishra, Khalid F. Almoosa, Trevor Cohen, Vimla L. Patel
2013	Misc	`conf`	Word Sense Disambiguation of Clinical Abbreviations with Hyperdimensional Computing. AMIA Sungrim Moon, Bjoern-Toby Berster, Hua Xu, Trevor Cohen
2012	J	`jnl`	Avatar-based simulation in the evaluation of diagnosis and management of mental health disorders in primary care. J. Biomed. Informatics Rachel M. Satter, Trevor Cohen, Pierina Ortiz, Kanav Kahol, James Mackenzie, Carol Olson, Mina Johnson, Vimla L. Patel
2012	Misc	`conf`	Designing a Learning Technology for Community Health Workers. AMIA Claire Loe, Trevor Cohen, Jiajie Zhang, Maria Fernandez, Amy Franklin
2012	Misc	`conf`	Deterministic Binary Vectors for Efficient Automated Indexing of MEDLINE/PubMed Abstracts. AMIA Manuel Wahle, Dominic Widdows, Jorge R. Herskovic, Elmer V. Bernstam, Trevor Cohen
2012	J	`jnl`	Discovering discovery patterns with predication-based Semantic Indexing. J. Biomed. Informatics Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Peter Davies, Thomas C. Rindflesch
2012	—	`conf`	Discovery at a distance: Farther journeys in predication space. BIBM Workshops Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
2012	—	`conf`	Discovery by scent: Discovery browsing system based on the Information Foraging Theory. BIBM Workshops J. Caleb Goodwin, Trevor Cohen, Thomas C. Rindflesch
2012	J	`jnl`	Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez
2012	J	`jnl`	Focus on information retrieval: Predicting biomedical document access as a function of past use. J. Am. Medical Informatics Assoc. J. Caleb Goodwin, Todd R. Johnson, Trevor Cohen, Jorge R. Herskovic, Elmer V. Bernstam
2012	J	`jnl`	Graph-based signal integration for high-throughput phenotyping. BMC Bioinform. Jorge R. Herskovic, Devika Subramanian, Trevor Cohen, Pamela A. Bozzo-Silva, Charles F. Bearden, Elmer V. Bernstam
2012	Misc	`conf`	Hyperdimensional Computing Approach to Word Sense Disambiguation. AMIA Bjoern-Toby Berster, Joshua Goodwin, Trevor Cohen
2012	—	`conf`	Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies. QI Trevor Cohen, Dominic Widdows, Lance De Vine, Roger W. Schvaneveldt, Thomas C. Rindflesch
2012	—	`conf`	Real, Complex, and Binary Semantic Vectors. QI Dominic Widdows, Trevor Cohen
2012	Misc	`conf`	Reducing Cognitive Load: Exploring Knowledge Model-driven Clinical Information Displays. AMIA Dean F. Sittig, Allison B. McCoy, Adam Wright, Amy Franklin, Trevor Cohen
2011	J	`jnl`	Considering complexity in healthcare systems. J. Biomed. Informatics Thomas George Kannampallil, Guido F. Schauer, Trevor Cohen, Vimla L. Patel
2011	—	`conf`	Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space. QI Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
2011	J	`jnl`	MEDRank: Using graph-based concept ranking to index biomedical texts. Int. J. Medical Informatics Jorge R. Herskovic, Trevor Cohen, Devika Subramanian, M. Sriram Iyengar, Jack W. Smith, Elmer V. Bernstam
2011	J	`jnl`	Making sense: Sensor-based investigation of clinician activities in complex critical care environments. J. Biomed. Informatics Thomas George Kannampallil, Zhe Li, Min Zhang, Trevor Cohen, David J. Robinson, Amy Franklin, Jiajie Zhang, Vimla L. Patel
2011	J	`jnl`	Recovery at the edge of error: Debunking the myth of the infallible expert. J. Biomed. Informatics Vimla L. Patel, Trevor Cohen, Tripti Murarka, Joanne Olsen, Srujana Kagita, Sahiti Myneni, Timothy G. Buchman, Vafa Ghaemmaghami
2011	J	`jnl`	Toward automated workflow analysis and visualization in clinical environments. J. Biomed. Informatics Mithra Vankipuram, Kanav Kahol, Trevor Cohen, Vimla L. Patel
2010	C	`conf`	A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez
2010	—	`conf`	Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
2010	J	`jnl`	Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections. J. Biomed. Informatics Trevor Cohen, Roger W. Schvaneveldt, Dominic Widdows
2010	J	`jnl`	Reflective random indexing for semi-automatic indexing of the biomedical literature. J. Biomed. Informatics Vidya Vasuki, Trevor Cohen
2010	—	`conf`	The Semantic Vectors Package: New Algorithms and Public Tools for Distributional Semantics. ICSC Dominic Widdows, Trevor Cohen
2010	—	`conf`	The Trajectory of Scientific Discovery: Concept Co-Occurrence and Converging Semantic Distance. MedInfo Trevor Cohen, Roger W. Schvaneveldt
2009	J	`jnl`	Empirical distributional semantics: Methods and biomedical applications. J. Biomed. Informatics Trevor Cohen, Dominic Widdows
2009	Misc	`conf`	Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. AMIA Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch
2009	—	`conf`	Semantic Vector Combinations and the Synoptic Gospels. QI Dominic Widdows, Trevor Cohen
2009	Misc	`conf`	The Cognitive Basis of Effective Team Performance: Features of Failure and Success in Simulated Cardiac Resuscitation. AMIA Pallavi Shetty, Trevor Cohen, Bhavesh Patel, Vimla L. Patel
2009	Misc	`conf`	Visualization and Analysis of Activities in Critical Care Environments. AMIA Mithra Vankipuram, Kanav Kahol, Trevor Cohen, Vimla L. Patel
2008	Misc	`conf`	Exploring MEDLINE Space with Random Indexing and Pathfinder Networks. AMIA Trevor Cohen
2008	J	`jnl`	Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative. J. Biomed. Informatics Trevor Cohen, Brett Blatter, Vimla L. Patel
2007	J	`jnl`	Research Paper: Reevaluating Recovery: Perceived Violations and Preemptive Interventions on Emergency Psychiatry Rounds. J. Am. Medical Informatics Assoc. Trevor Cohen, Brett Blatter, Carlos Almeida, Vimla L. Patel
2006	J	`jnl`	A cognitive blueprint of collaboration in context: Distributed cognition in the psychiatric emergency department. Artif. Intell. Medicine Trevor Cohen, Brett Blatter, Carlos Almeida, Edward H. Shortliffe, Vimla L. Patel
2006	J	`jnl`	Customizing clinical narratives for the electronic medical record interface using cognitive methods. Int. J. Medical Informatics Pallav Sharda, Amar K. Das, Trevor Cohen, Vimla L. Patel
2005	Misc	`conf`	Exploring dangerous neighborhoods: Latent Semantic Analysis and computing beyond the bounds of the familiar. AMIA Trevor Cohen, Brett Blatter, Vimla L. Patel
2004	—	`conf`	Cognitive Evaluation of an Innovative Psychiatric Clinical Knowledge Enhancement System. MedInfo Trevor Cohen, David Kaufman, Thomas White, Gerald Segal, Amy Bennett Staub, Vimla L. Patel, Molly T. Finnerty