Tony Pan

57 papers A 5B 3C 4Misc 4Journal 33Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Unified AI Approach for Continuous Monitoring of Human Health and Diseases from Intensive Care Unit to Home with Physiological Foundation Models (UNIPHY+).
CoRR
Minxiao Wang, Saurabh Kataria, Juntong Ni, Timothy G. Buchman, Jocelyn Grunwell, Mark Mai, Wei Jin, Matthew Clark, Stephanie R. Brown, Michael Fundora, Puneet Sharma, Tony Pan, Sam Khan, Timothy Ruchti, Naveen Muthu, Kevin Maher, Sivasubramanium V. Bhavani, Xiao Hu
2025 J jnl
Distributed executions with CONTROL-CORE: integrated development environment (IDE) for cosed-loop neuromodulation control systems.
Clust. Comput.
Pradeeban Kathiravelu, Mark G. Arnold, Shivang Vijay, Rahul Jagwani, Parteek Goyal, Aviral Kumar Goel, Nan Li, Charles Horn, Tony Pan, Mayuresh V. Kothare, Babak Mahmoudi
2024 J jnl
Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration.
J. Open Source Softw.
Ryan Birmingham, Nan Li, Tony Pan, Yahia Zakaria
2020 J jnl
Fast de Bruijn Graph Compaction in Distributed Memory Environments.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tony Pan, Rahul Nihalani, Srinivas Aluru
2019 J jnl
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru
2017 J jnl
An Adaptive Parallel Algorithm for Computing Connected Components.
IEEE Trans. Parallel Distributed Syst.
Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru
2017 J jnl
Parallelized Kendall's Tau Coefficient Computation via SIMD Vectorized Sorting On Many-Integrated-Core Processors.
CoRR
Yongchao Liu, Tony Pan, Oded Green, Srinivas Aluru
2017 J jnl
Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications".
Parallel Comput.
Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru
2016 J jnl
An Adaptive Parallel Algorithm for Computing Connectivity.
CoRR
Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru
2016 — conf
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.
BCB
Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru
2016 J jnl
Parallel Pairwise Correlation Computation On Intel Xeon Phi Clusters.
CoRR
Yongchao Liu, Tony Pan, Srinivas Aluru
2016 C conf
Parallel Pairwise Correlation Computation on Intel Xeon Phi Clusters.
SBAC-PAD
Yongchao Liu, Tony Pan, Srinivas Aluru
2015 A conf
A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications.
SC
Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru
2014 J jnl
Region Templates: Data Representation and Management for Large-Scale Image Analysis.
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2014 J jnl
Region templates: Data representation and management for high-throughput image analysis.
Parallel Comput.
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2013 J jnl
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines.
Parallel Comput.
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2013 J jnl
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures.
Int. J. High Perform. Comput. Appl.
Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç
2013 — conf
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
BIBM
Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat
2013 A conf
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.
IPDPS
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz
2013 J jnl
Semantically Interoperable XML Data.
Int. J. Semantic Comput.
Cristobal Vergara-Niedermayr, Fusheng Wang, Tony Pan, Tahsin M. Kurç, Joel H. Saltz
2012 A conf
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.
IPDPS
George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz
2012 J jnl
Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2012 Misc conf
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
AMIA
Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang
2012 J jnl
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2012 J jnl
Imaging Infrastructure for Research. Part 2. Data Management Practices.
J. Digit. Imaging
Daniel S. Marcus, Bradley James Erickson, Tony Pan
2012 J jnl
Integrated morphologic analysis for the identification and characterization of disease subtypes.
J. Am. Medical Informatics Assoc.
Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2012 J jnl
Whitepapers on Imaging Infrastructure for Research - Part 1: General Workflow Considerations.
J. Digit. Imaging
Bradley James Erickson, Tony Pan, Daniel S. Marcus
2012 J jnl
Whitepapers on Imaging Infrastructure for Research Part Three: Security and Privacy.
J. Digit. Imaging
Tony Pan, Bradley James Erickson, Daniel S. Marcus
2011 J jnl
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.
J. Am. Medical Informatics Assoc.
David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz
2011 J jnl
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
IEEE Trans. Biomed. Eng.
Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat
2010 — conf
High Performance Computing Techniques for Scaling Image Analysis Workflows.
PARA (2)
Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
2010 — conf
High-Performance Systems for in Silico Microscopy Imaging Studies.
DILS
Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar
2009 J jnl
HPC and Grid Computing for Integrative Biomedical Research.
Int. J. High Perform. Comput. Appl.
Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz
2009 J jnl
VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid.
J. Digit. Imaging
Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz
2008 — conf
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research.
HealthGrid
Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong
2008 J jnl
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments.
Int. J. Parallel Program.
George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2008 J jnl
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets.
J. Biomed. Informatics
Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang
2008 J jnl
Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment.
J. Am. Medical Informatics Assoc.
Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz
2008 A conf
Translational research design templates, Grid computing, and HPC.
IPDPS
Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç
2008 J jnl
e-Science, caGrid, and Translational Biomedical Research.
Computer
Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel
2007 J jnl
GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support.
J. Digit. Imaging
Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz
2007 C conf
The GPU on biomedical image processing for color and phenotype analysis.
BIBE
Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz
2007 J jnl
Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data.
Comput. Sci. Eng.
Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2006 C conf
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments.
SBAC-PAD
George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2006 — conf
Automatic registration of large set of microscopic images using high-level features.
ISBI
Jeff Prescott, Matthew Clary, Gregory J. Wiet, Tony Pan, Kun Huang
2006 — conf
Image Analysis for Neuroblastoma Classification: Segmentation of Cell Nuclei.
EMBC
Metin N. Gurcan, Tony Pan, Hiroyuki Shimada, Joel H. Saltz
2006 B conf
Registration and 3D visualization of large microscopy images.
Image Processing
Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2006 Misc conf
Service-Based Access to and Processing of Large Scientific Datasets.
High Performance Computing Workshop
Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz
2005 J jnl
Application of Information Technology: A Grid-Based Image Archival and Analysis System.
J. Am. Medical Informatics Assoc.
Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz
2005 C conf
Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying.
CLUSTER
Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang
2005 Misc conf
Grid-based management of biomedical data using an XML-based distributed data management system.
SAC
Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz
2005 — conf
Supporting Large Scale Medical and Scientific Datasets.
PARCO
Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz
2005 J jnl
XML database support for distributed execution of data-intensive scientific workflows.
SIGMOD Rec.
Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç
2004 B conf
Serving queries to multi-resolution datasets on disk-based storage clusters.
CCGRID
Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2004 A conf
Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms.
HPDC
Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz
2004 Misc conf
Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data.
High Performance Computing Workshop
Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz
2003 B conf
Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications.
CCGRID
Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz