Tony E. Lewis

18 papers A 2B 1Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2019 J jnl
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Res.
Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo
2019 J jnl
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly.
Bioinform.
Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees
2018 J jnl
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
2018 J jnl
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
2017 J jnl
CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Res.
Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe
2015 J jnl
CATH: comprehensive structural and functional annotations for genome sequences.
Nucleic Acids Res.
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
2015 J jnl
Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo
2013 J jnl
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo
2013 J jnl
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Res.
Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo
2011 J jnl
Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Res.
Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Andrew B. Clegg, Robert Rentzsch, Nicholas Furnham, Marialuisa Pellegrini-Calace, David T. Jones, Janet M. Thornton, Christine A. Orengo
2011 — conf
Identifying similarities in TMBL programs with alignment to quicken their compilation for GPUs: computational intelligence on consumer games and graphics hardware.
GECCO (Companion)
Tony E. Lewis, George D. Magoulas
2011 — conf
TMBL kernels for CUDA GPUs compile faster using PTX: computational intelligence on consumer games and graphics hardware.
GECCO (Companion)
Tony E. Lewis, George D. Magoulas
2010 B conf
Tweaking a tower of blocks leads to a TMBL: Pursuing long term fitness growth in program evolution.
IEEE Congress on Evolutionary Computation
Tony E. Lewis, George D. Magoulas
2009 A conf
Strategies to minimise the total run time of cyclic graph based genetic programming with GPUs.
GECCO
Tony E. Lewis, George D. Magoulas
2009 J jnl
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies.
Nucleic Acids Res.
Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo
2008 A conf
TREAD: a new genetic programming representation aimed at research of long term complexity growth.
GECCO
Tony E. Lewis, George D. Magoulas
2007 J jnl
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
Nucleic Acids Res.
Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison L. Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam James Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo
2005 J jnl
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Nucleic Acids Res.
Frances M. G. Pearl, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David A. Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves, Ilhem Diboun, Sarah Addou, Stefano Lise, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton, Christine A. Orengo