Tong Liu

13 papers Journal 10Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
Learning Micro-C from Hi-C with diffusion models.
PLoS Comput. Biol.
Tong Liu, Hao Zhu, Zheng Wang
2024 — conf
PICNIC: refinement of AlphaFold2 tertiary structure predictions using deep 3D residual neural networks.
BIBM
Ross Campbell Stewart, Chenguang Zhao, Tong Liu, Zheng Wang
2023 J jnl
DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks.
PLoS Comput. Biol.
Tong Liu, Zheng Wang
2023 J jnl
scHiMe: predicting single-cell DNA methylation levels based on single-cell Hi-C data.
Briefings Bioinform.
Hao Zhu, Tong Liu, Zheng Wang
2022 — conf
ST-ChIP: Accurate prediction of spatiotemporal ChIP-seq data with recurrent neural networks.
BIBM
Tong Liu, Zheng Wang
2020 J jnl
MASS: predict the global qualities of individual protein models using random forests and novel statistical potentials.
BMC Bioinform.
Tong Liu, Zheng Wang
2019 J jnl
Exploring the 2D and 3D structural properties of topologically associating domains.
BMC Bioinform.
Tong Liu, Zheng Wang
2019 J jnl
HiCNN: a very deep convolutional neural network to better enhance the resolution of Hi-C data.
Bioinform.
Tong Liu, Zheng Wang
2019 J jnl
Predicting protein residue-residue contacts using random forests and deep networks.
BMC Bioinform.
Joseph Luttrell IV, Tong Liu, Chaoyang Zhang, Zheng Wang
2018 — conf
Measuring the three-dimensional structural properties of topologically associating domains.
BIBM
Tong Liu, Zheng Wang
2018 J jnl
Reconstructing high-resolution chromosome three-dimensional structures by Hi-C complex networks.
BMC Bioinform.
Tong Liu, Zheng Wang
2018 J jnl
SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity.
Source Code Biol. Medicine
Tong Liu, Zheng Wang
2018 J jnl
scHiCNorm: a software package to eliminate systematic biases in single-cell Hi-C data.
Bioinform.
Tong Liu, Zheng Wang