Tomás Racek - RankMe

13 papers B 1Journal 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Analysis of cyclohexane, cyclopentane, and benzene conformations in ligands for PDB X-ray structures using the Hill-Reilly approach. J. Cheminformatics Gabriela Buceková, Viktoriia Doshchenko, Tomás Svoboda, Jana Porubská, Aliaksei Chareshneu, Tomás Racek, Vladimír Horský, Radka Svobodová Vareková, Ondrej Schindler
2025	J	`jnl`	Gromacs MetaDump: a tool for extracting GROMACS simulation metadata. J. Cheminformatics Adrián Rosinec, Terézia Slanináková, Tomás Pavlík, Róbert Randiak, Tomás Svoboda, Tomás Racek, Gabriela Buceková, Ondrej Schindler, Matej Antol, Ales Krenek, Karel Berka, Radka Svobodová Vareková
2025	J	`jnl`	MOLEonline: a web-based tool for analysing channels, tunnels, and pores (2025 update). Bioinform. Tomás Racek, Dusan Vel'ký, Gabriela Buceková, Ondrej Schindler, Ivana Hutarová Vareková, Anna Spacková, Václav Bazgier, Karel Berka, Radka Svobodová Vareková
2023	J	`jnl`	Onedata4Sci: Life science data management solution based on Onedata. CoRR Tomás Svoboda, Tomás Racek, Josef Handl, Jozef Sabo, Adrián Rosinec, Lukasz Opiola, Wojciech Jesionek, Milan Esner, Markéta Pernisová, Natallia Madzia Valasevich, Ales Krenek, Radka Svobodová Vareková
2023	J	`jnl`	αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Res. Ondrej Schindler, Karel Berka, Alessio Cantara, Ales Krenek, Dominik Tichý, Tomás Racek, Radka Svobodová Vareková
2021	J	`jnl`	Correction to: Optimized SQE atomic charges for peptides accessible via a web application. J. Cheminformatics Ondrej Schindler, Tomás Racek, Aleksandra Marsavelski, Jaroslav Koca, Karel Berka, Radka Svobodová Vareková
2021	J	`jnl`	Optimized SQE atomic charges for peptides accessible via a web application. J. Cheminformatics Ondrej Schindler, Tomás Racek, Aleksandra Marsavelski, Jaroslav Koca, Karel Berka, Radka Svobodová Vareková
2021	B	`conf`	Similarity Search for an Extreme Application: Experience and Implementation. SISAP Vladimir Mic, Tomás Racek, Ales Krenek, Pavel Zezula
2020	J	`jnl`	Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic Acids Res. Tomás Racek, Ondrej Schindler, Dominik Tousek, Vladimír Horský, Karel Berka, Jaroslav Koca, Radka Svobodová Vareková
2020	J	`jnl`	Community curation of bioinformatics software and data resources. Briefings Bioinform. Jon C. Ison, Hervé Ménager, Bryan Brancotte, Erik Jaaniso, Ahto Salumets, Tomás Racek, Anna-Lena Lamprecht, Magnus Palmblad, Matús Kalas, Piotr Chmura, John M. Hancock, Veit Schwämmle, Hans-Ioan Ienasescu
2016	J	`jnl`	NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. J. Cheminformatics Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca
2015	J	`jnl`	High-quality and universal empirical atomic charges for chemoinformatics applications. J. Cheminformatics Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca
2014	J	`jnl`	Empirical charges for chemoinformatics applications. J. Cheminformatics Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca