Tomás Gedeon - RankMe

42 papers A 2Misc 1Journal 35Unranked 4

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Subnetwork inclusion and switching of multilevel Boolean networks preserve parameter graph structure and dynamics. Frontiers Appl. Math. Stat. William Duncan, Breschine Cummins, Tomás Gedeon
2023	J	`jnl`	Oscillator death in coupled biochemical oscillators. Math. Control. Signals Syst. Tomás Gedeon, Breschine Cummins
2022	J	`jnl`	Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase
2022	J	`jnl`	Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation. SIAM J. Appl. Dyn. Syst. Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang
2022	J	`jnl`	Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data. CoRR Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon
2022	J	`jnl`	Joint realizability of monotone Boolean functions. Theor. Comput. Sci. Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2022	J	`jnl`	The Lack of Convexity of the Relevance-Compression Function. CoRR Albert E. Parker, Tomás Gedeon, Alexander Dimitrov
2021	J	`jnl`	Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities. SIAM J. Appl. Dyn. Syst. William D. Kalies, Tomás Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka
2021	J	`jnl`	Rational design of complex phenotype via network models. PLoS Comput. Biol. Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow
2021	J	`jnl`	Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions. Int. J. Bifurc. Chaos William Duncan, Tomás Gedeon
2021	J	`jnl`	Trade-offs among transcription elongation rate, number, and duration of ubiquitous pauses on highly transcribed bacterial genes. J. Bioinform. Comput. Biol. Tomás Gedeon, Lisa Davis, Katelyn Weber, Jennifer Thorenson
2020	J	`jnl`	Analysis of Dynamics of a Biphasic Isothermal DNA Amplification Reaction. SIAM J. Appl. Math. Danielle Ciesielski, Stephanie McCalla, Tomás Gedeon
2020	J	`jnl`	Multi-parameter exploration of dynamics of regulatory networks. Biosyst. Tomás Gedeon
2020	J	`jnl`	Multistability in the epithelial-mesenchymal transition network. BMC Bioinform. Ying Xin, Bree Cummins, Tomás Gedeon
2019	J	`jnl`	A poset metric from the directed maximum common edge subgraph. CoRR Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2019	J	`jnl`	Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM J. Appl. Dyn. Syst. Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
2018	J	`jnl`	Identifying robust hysteresis in networks. PLoS Comput. Biol. Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow
2018	J	`jnl`	Model Rejection and Parameter Reduction via Time Series. SIAM J. Appl. Dyn. Syst. Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
2017	—	`conf`	Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN). CMSB Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
2016	J	`jnl`	A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases. PLoS Comput. Biol. Tamra Heberling, Lisa Davis, Jakub Gedeon, Charles Morgan, Tomás Gedeon
2016	J	`jnl`	Combinatorial Representation of Parameter Space for Switching Networks. SIAM J. Appl. Dyn. Syst. Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok
2015	J	`jnl`	On the Efficacy of State Space Reconstruction Methods in Determining Causality. SIAM J. Appl. Dyn. Syst. Bree Cummins, Tomás Gedeon, Kelly Spendlove
2012	J	`jnl`	The Mathematical Structure of Information Bottleneck Methods. Entropy Tomás Gedeon, Albert E. Parker, Alexander G. Dimitrov
2012	J	`jnl`	Using machine learning to predict catastrophes in dynamical systems. J. Comput. Appl. Math. Jesse Berwald, Tomás Gedeon, John W. Sheppard
2011	A	`conf`	On the movement of vertex fixed points in the simple GA. FOGA Alden H. Wright, Tomás Gedeon, J. Neal Richter
2011	J	`jnl`	Temporal Encoding in a Nervous System. PLoS Comput. Biol. Zane N. Aldworth, Alexander G. Dimitrov, Graham I. Cummins, Tomás Gedeon, John P. Miller
2010	J	`jnl`	Hyperbolicity of the fixed point set for the simple genetic algorithm. Theor. Comput. Sci. Christina Hayes, Tomás Gedeon
2010	—	`conf`	Modeling Complexity of Physiological Time Series In-Silico. BIOSIGNALS Jesse Berwald, Tomás Gedeon, Konstantin Mischaikow
2010	J	`jnl`	Oscillations in Monotone Systems with a Negative Feedback. SIAM J. Appl. Dyn. Syst. Tomás Gedeon
2010	J	`jnl`	Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein. PLoS Comput. Biol. Mark Campanelli, Tomás Gedeon
2010	J	`jnl`	Symmetry breaking in soft clustering decoding of neural codes. IEEE Trans. Inf. Theory Albert E. Parker, Alexander G. Dimitrov, Tomás Gedeon
2008	J	`jnl`	Annealing and the normalized N-cut. Pattern Recognit. Tomás Gedeon, Albert E. Parker, Collette Campion, Zane N. Aldworth
2007	J	`jnl`	Analysis of Constrained Optimization Variants of the Map-Seeking Circuit Algorithm. J. Math. Imaging Vis. S. R. Harker, Curtis R. Vogel, Tomás Gedeon
2007	J	`jnl`	Convergence of Map Seeking Circuits. J. Math. Imaging Vis. Tomás Gedeon, David Arathorn
2007	A	`conf`	Genericity of the Fixed Point Set for the Infinite Population Genetic Algorithm. FOGA Tomás Gedeon, Christina Hayes, Richard Swanson
2006	J	`jnl`	Effects of stimulus transformations on estimates of sensory neuron selectivity. J. Comput. Neurosci. Alexander G. Dimitrov, Tomás Gedeon
2005	—	`conf`	Hyperbolic fixed points are typical in the space of mixing operators for the infinite population genetic algorithm. GECCO Workshops Christina Hayes, Tomás Gedeon
2004	J	`jnl`	Finding neural codes using random projections. Neurocomputing Brendan Mumey, Aditi Sarkar, Tomás Gedeon, Alexander Dimitrov, John P. Miller
2003	Misc	`conf`	Derivation of Natural Stimulus Feature Set Using a Data-Driven Model. International Conference on Computational Science Alexander Dimitrov, Tomás Gedeon, Brendan Mumey, Ross Snider, Albert E. Parker, John P. Miller
2002	—	`conf`	Annealing and the Rate Distortion Problem. NIPS Albert E. Parker, Tomás Gedeon, Alexander Dimitrov
2001	J	`jnl`	Non-uniform quantization of neural spike sequences through an information distortion measure. Neurocomputing Alexander Dimitrov, John P. Miller, Zane N. Aldworth, Tomás Gedeon
1999	J	`jnl`	Additive neural networks and periodic patterns. Neural Networks Tomás Gedeon