Tomás Di Domenico

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2022 J jnl
APPRIS: selecting functionally important isoforms.
Nucleic Acids Res.
José Manuel Rodriguez, Fernando Pozo, Daniel Cerdán-Vélez, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress
2022 J jnl
bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses.
Bioinform.
Luis García-Jimeno, Coral Fustero Torre, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour
2021 J jnl
GENCODE 2021.
Nucleic Acids Res.
Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek
2020 J jnl
An analysis of tissue-specific alternative splicing at the protein level.
PLoS Comput. Biol.
José Manuel Rodriguez, Fernando Pozo, Tomás Di Domenico, Jesús Vázquez, Michael L. Tress
2019 J jnl
GENCODE reference annotation for the human and mouse genomes.
Nucleic Acids Res.
Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek
2019 J jnl
vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer.
Bioinform.
Javier Perales-Patón, Tomás Di Domenico, Coral Fustero Torre, Elena Piñeiro-Yáñez, Carlos Carretero-Puche, Héctor Tejero, Alfonso Valencia, Gonzalo Gómez-López, Fátima Al-Shahrour
2018 J jnl
APPRIS 2017: principal isoforms for multiple gene sets.
Nucleic Acids Res.
José Manuel Rodriguez, Juan Rodriguez-Rivas, Tomás Di Domenico, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
2015 J jnl
Comprehensive large-scale assessment of intrinsic protein disorder.
Bioinform.
Ian Walsh, Manuel Giollo, Tomás Di Domenico, Carlo Ferrari, Olav Zimmermann, Silvio C. E. Tosatto
2015 J jnl
Highlights from the tenth ISCB Student Council Symposium 2014.
BMC Bioinform.
Farzana Rahman, Katie Wilkins, Annika Jacobsen, Alexander Junge, Esmeralda Vicedo, Dan F. DeBlasio, Anupama Jigisha, Tomás Di Domenico
2015 J jnl
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.
Nucleic Acids Res.
Emilio Potenza, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2014 J jnl
Highlights from the ISCB Student Council Symposium 2013.
BMC Bioinform.
Tomás Di Domenico, Cynthia Prudence, Esmeralda Vicedo, Emre Guney, Anupama Jigisha, Avinash Kumar Shanmugam
2014 J jnl
RepeatsDB: a database of tandem repeat protein structures.
Nucleic Acids Res.
Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto
2013 J jnl
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
BMC Bioinform.
Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2013 J jnl
ISCB Computational Biology Wikipedia Competition.
PLoS Comput. Biol.
Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost
2012 J jnl
ESpritz: accurate and fast prediction of protein disorder.
Bioinform.
Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Silvio C. E. Tosatto
2012 J jnl
MobiDB: a comprehensive database of intrinsic protein disorder annotations.
Bioinform.
Tomás Di Domenico, Ian Walsh, Alberto J. M. Martin, Silvio C. E. Tosatto
2012 J jnl
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.
Bioinform.
Ian Walsh, Francesco Sirocco, Giovanni Minervini, Tomás Di Domenico, Carlo Ferrari, Silvio C. E. Tosatto
2011 J jnl
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.
Nucleic Acids Res.
Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Alessandro Vullo, Gianluca Pollastri, Silvio C. E. Tosatto
2011 J jnl
RING: networking interacting residues, evolutionary information and energetics in protein structures.
Bioinform.
Alberto J. M. Martin, Michele Vidotto, Filippo Boscariol, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2010 J jnl
Networks of High Mutual Information Define the Structural Proximity of Catalytic Sites: Implications for Catalytic Residue Identification.
PLoS Comput. Biol.
Cristina Marino Buslje, Elin Teppa, Tomás Di Domenico, José María Delfino, Morten Nielsen