Tommaso Mazza - RankMe

48 papers B 2C 1Journal 28Unranked 17

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Unsupervised synchronization of molecular dynamics trajectories via graph embedding and time warping. Bioinform. Manuel Mangoni, Salvatore Daniele Bianco, Francesco Petrizzelli, Michele Pieroni, Pietro Hiram Guzzi, Viviana Caputo, Tommaso Biagini, Tommaso Mazza
2025	J	`jnl`	E-ABIN: an Explainable module for Anomaly detection in BIological Networks. CoRR Ugo Lomoio, Tommaso Mazza, Pierangelo Veltri, Pietro Hiram Guzzi
2024	—	`conf`	Anomaly Detection in Individual Specific Networks through Explainable Generative Adversarial Attributed Networks. BIBM Pietro Hiram Guzzi, Ugo Lomoio, Tommaso Mazza, Pierangelo Veltri
2022	—	`conf`	A novel framework based on network embedding for the simulation and analysis of disease progression. BIBM Francesco Chiodo, Mario Torchia, Enza Messina, Elisabetta Fersini, Tommaso Mazza, Pietro Hiram Guzzi
2022	J	`jnl`	Beyond COVID-19 Pandemic: Topology-aware optimisation of vaccination strategy for minimising virus spreading. CoRR Francesco Petrizzelli, Pietro Hiram Guzzi, Tommaso Mazza
2022	J	`jnl`	Connecting the dots: A practical evaluation of web-tools for describing protein dynamics as networks. Frontiers Bioinform. Francesco Petrizzelli, Tommaso Biagini, Salvatore Daniele Bianco, Niccolò Liorni, Alessandro Napoli, Stefano Castellana, Tommaso Mazza
2022	J	`jnl`	Disease spreading modeling and analysis: a survey. Briefings Bioinform. Pietro Hiram Guzzi, Francesco Petrizzelli, Tommaso Mazza
2022	J	`jnl`	TMBleR: a bioinformatic tool to optimize TMB estimation and predictive power. Bioinform. Laura Fancello, Alessandro Guida, Gianmaria Frige, Arnaud Céol, Gabriele Babini, Giovanni Luca Scaglione, Mario Zanfardino, Tommaso Mazza, Lorenzo Ferrando, Pier Giuseppe Pelicci, Luca Mazzarella
2021	J	`jnl`	A comparative benchmark of classic DNA motif discovery tools on synthetic data. Briefings Bioinform. Stefano Castellana, Tommaso Biagini, Luca Parca, Francesco Petrizzelli, Salvatore Daniele Bianco, Angelo Luigi Vescovi, Massimo Carella, Tommaso Mazza
2021	J	`jnl`	MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Nucleic Acids Res. Stefano Castellana, Tommaso Biagini, Francesco Petrizzelli, Luca Parca, Noemi Panzironi, Viviana Caputo, Angelo L. Vescovi, Massimo Carella, Tommaso Mazza
2018	J	`jnl`	Food Web Topology and Nested Keystone Species Complexes. Complex. Daniele Capocefalo, Juliana O. Pereira, Tommaso Mazza, Ferenc Jordán
2018	J	`jnl`	Molecular dynamics recipes for genome research. Briefings Bioinform. Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo L. Vescovi, Tommaso Mazza
2017	J	`jnl`	High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE. PLoS Comput. Biol. Stefano Castellana, Caterina Fusilli, Gianluigi Mazzoccoli, Tommaso Biagini, Daniele Capocefalo, Massimo Carella, Angelo L. Vescovi, Tommaso Mazza
2015	J	`jnl`	Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines. IEEE ACM Trans. Comput. Biol. Bioinform. Tommaso Mazza, Caterina Fusilli, Chiara Saracino, Gianluigi Mazzoccoli, Francesca Tavano, Manlio Vinciguerra, Valerio Pazienza
2013	J	`jnl`	A solid quality-control analysis of AB SOLiD short-read sequencing data. Briefings Bioinform. Stefano Castellana, Marta Romani, Enza Maria Valente, Tommaso Mazza
2013	J	`jnl`	Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a. Biosyst. Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza
2013	J	`jnl`	Congruency in the prediction of pathogenic missense mutations: state-of-the-art web-based tools. Briefings Bioinform. Stefano Castellana, Tommaso Mazza
2013	J	`jnl`	Estimating the global density of graphs by a sparseness index. Appl. Math. Comput. Salvatore Menniti, Emanuele Castagna, Tommaso Mazza
2013	J	`jnl`	Multi-Sided Compression Performance Assessment of ABI SOLiD WES Data. Algorithms Tommaso Mazza, Stefano Castellana
2012	J	`jnl`	AURA: Atlas of UTR Regulatory Activity. Bioinform. Erik Dassi, A. Malossini, Angela Re, Tommaso Mazza, Toma Tebaldi, Luigi Caputi, Alessandro Quattrone
2012	J	`jnl`	High Performance Computational Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. Tommaso Mazza
2012	J	`jnl`	Modeling and Simulation of Smart and Green Computing Systems. Computer Kaushik R. Chowdhury, Dave Cavalcanti, Mostafa El-Said, Tommaso Mazza, Chittabrata Ghosh
2012	J	`jnl`	The Relevance of Topology in Parallel Simulation of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Tommaso Mazza, Paolo Ballarini, Rosita Guido, Davide Prandi
2011	—	`conf`	Stability analysis of biological network topologies during stochastic simulation. SimuTools Tommaso Mazza, Davide Prandi
2010	J	`jnl`	Editorial: Accelerating systems biology. Briefings Bioinform. Tommaso Mazza
2010	J	`jnl`	Estimating the divisibility of complex biological networks by sparseness indices. Briefings Bioinform. Tommaso Mazza, Alessandro Romanel, Ferenc Jordán
2010	J	`jnl`	Snazer: the simulations and networks analyzer. BMC Syst. Biol. Tommaso Mazza, Gennaro Iaccarino, Corrado Priami
2009	—	`conf`	Analyzing various models of Circadian Clock and Cell Cycle coupling. Formal Methods in Molecular Biology Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini
2009	—	`conf`	Efficient Parallel Statistical Model Checking of Biochemical Networks PDMC Paolo Ballarini, Michele Forlin, Tommaso Mazza, Davide Prandi
2009	—	`conf`	Fastest parallel molecular algorithms for the elliptic curve discrete logarithm problem over GF(2n). BADS@ICAC Gennaro Iaccarino, Tommaso Mazza
2009	J	`jnl`	Taming the complexity of biological pathways through parallel computing. Briefings Bioinform. Paolo Ballarini, Rosita Guido, Tommaso Mazza, Davide Prandi
2008	—	`conf`	Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins. MeCBIC Tommaso Mazza, Matteo Cavaliere
2008	—	`conf`	On Parallel Stochastic Simulation of Diffusive Systems. CMSB Lorenzo Dematté, Tommaso Mazza
2008	—	`conf`	Studying Irreversible Transitions in a Model of Cell Cycle Regulation. PASM@EPEW Paolo Ballarini, Tommaso Mazza, Alida Palmisano, Attila Csikász-Nagy
2007	J	`jnl`	Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes. Bioinform. Sean Sedwards, Tommaso Mazza
2007	—	`conf`	Towards a Complete Covering of SBML Functionalities. Workshop on Membrane Computing Tommaso Mazza
2007	J	`jnl`	Using ontologies for preprocessing and mining spectra data on the Grid. Future Gener. Comput. Syst. Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2006	B	`conf`	Analysis and Classification of Proteomics Data, a Case Study. CBMS Pietro Hiram Guzzi, Mario Cannataro, Marco Gaspari, Tommaso Mazza, Barbara Quaresima, Pierangelo Veltri, Francesco Saverio Costanzo
2006	J	`jnl`	Managing ontologies for Grid computing. Multiagent Grid Syst. Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2006	—	`conf`	Mitotic Oscillators as MP Graphs. Workshop on Membrane Computing Giuditta Franco, Pietro Hiram Guzzi, Vincenzo Manca, Tommaso Mazza
2005	—	`conf`	Algorithms and Databases in Bioinformatics: Towards a Proteomic Ontology. ITCC (1) Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2005	C	`conf`	Distributed Management of Ontologies on the Grid. WETICE Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri
2005	—	`conf`	MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid. SKG Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri
2005	—	`conf`	On the Preprocessing of Mass Spectrometry Proteomics Data. WIRN/NAIS Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2005	B	`conf`	Preprocessing of Mass Spectrometry Proteomics Data on the Grid. CBMS Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2005	—	`conf`	Using Ontologies in PROTEUS for Modeling Proteomics Data Mining Applications. HealthGrid Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
2004	—	`conf`	Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer. WIRN Francesco Baudi, Mario Cannataro, Rita Casadonte, Francesco Costanzo, Giovanni Cuda, Maria Concetta Faniello, Marco Gaspari, Pietro Hiram Guzzi, Tommaso Mazza, Barbara Quaresima, Pierosandro Tagliaferri, Giuseppe Tradigo, Pierangelo Veltri, Salvatore Venuta
2004	—	`conf`	Using PROTEUS for Modeling Data Mining Analysis of Proteomics Experiments on the Grid. OTM Workshops Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri