Tomer Shlomi

22 papers B 2C 1Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2013 J jnl
An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments.
Bioinform.
Naama Tepper, Tomer Shlomi
2012 J jnl
Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters.
PLoS Comput. Biol.
Roi Adadi, Benjamin Volkmer, Ron Milo, Matthias Heinemann, Tomer Shlomi
2011 J jnl
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect.
PLoS Comput. Biol.
Tomer Shlomi, Tomer Benyamini, Eyal Gottlieb, Roded Sharan, Eytan Ruppin
2011 J jnl
Pathway-Based Functional Analysis of Metagenomes.
J. Comput. Biol.
Itai Sharon, Sivan Bercovici, Ron Y. Pinter, Tomer Shlomi
2010 J jnl
Associating Genes and Protein Complexes with Disease via Network Propagation.
PLoS Comput. Biol.
Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan
2010 J jnl
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.
Bioinform.
Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi
2010 B conf
Pathway-Based Functional Analysis of Metagenomes.
RECOMB
Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi
2010 J jnl
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways.
Bioinform.
Naama Tepper, Tomer Shlomi
2010 J jnl
iMAT: an integrative metabolic analysis tool.
Bioinform.
Hadas Zur, Eytan Ruppin, Tomer Shlomi
2009 J jnl
Network-based prediction of metabolic enzymes' subcellular localization.
Bioinform.
Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi
2008 — —
Functional models and building blocks of metabolic and protein networks
Tomer Shlomi
2008 J jnl
QNet: A Tool for Querying Protein Interaction Networks.
J. Comput. Biol.
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
2007 J jnl
Constraint-based functional similarity of metabolic genes: going beyond network topology.
Bioinform.
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
2007 J jnl
Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network.
BMC Syst. Biol.
Ofer Meshi, Tomer Shlomi, Eytan Ruppin
2007 J jnl
Pepitope: epitope mapping from affinity-selected peptides.
Bioinform.
Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko
2007 B conf
QNet: A Tool for Querying Protein Interaction Networks.
RECOMB
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
2007 — conf
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments.
ISMB/ECCB (Supplement of Bioinformatics)
Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan
2006 J jnl
A direct comparison of protein interaction confidence assignment schemes.
BMC Bioinform.
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
2006 J jnl
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States.
PLoS Comput. Biol.
Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin
2006 C conf
Flux-Based
WABI
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
2006 J jnl
QPath: a method for querying pathways in a protein-protein interaction network.
BMC Bioinform.
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
2005 — conf
Comparison of Protein-Protein Interaction Confidence Assignment Schemes.
Systems Biology and Regulatory Genomics
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker