Tom R. Gaunt

34 papers B 1Journal 30Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Integrating Mendelian randomization and literature-mined evidence for breast cancer risk factors.
J. Biomed. Informatics
Marina Vabistsevits, Timothy Robinson, Ben Elsworth, Yi Liu, Tom R. Gaunt
2024 J jnl
DrivR-Base: a feature extraction toolkit for variant effect prediction model construction.
Bioinform.
Amy Francis, Colin Campbell, Tom R. Gaunt
2024 J jnl
Fast polypharmacy side effect prediction using tensor factorization.
Bioinform.
Oliver Lloyd, Yi Liu, Tom R. Gaunt
2024 J jnl
Tensor Factorisation for Polypharmacy Side Effect Prediction.
CoRR
Oliver Lloyd, Yi Liu, Tom R. Gaunt
2024 J jnl
Triangulating evidence in health sciences with Annotated Semantic Queries.
Bioinform.
Yi Liu, Tom R. Gaunt
2023 J jnl
Assessing the effects of hyperparameters on knowledge graph embedding quality.
J. Big Data
Oliver Lloyd, Yi Liu, Tom R. Gaunt
2023 J jnl
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets.
Bioinform.
Yi Liu, Benjamin L. Elsworth, Tom R. Gaunt
2022 J jnl
Assessing the Effects of Hyperparameters on Knowledge Graph Embedding Quality.
CoRR
Oliver Lloyd, Yi Liu, Tom R. Gaunt
2021 J jnl
An informatics consult approach for generating clinical evidence for treatment decisions.
BMC Medical Informatics Decis. Mak.
Alvina Grace Lai, Wai Hoong Chang, Constantinos A. Parisinos, Michail Katsoulis, Ruth M. Blackburn, Anoop D. Shah, Vincent Nguyen, Spiros C. Denaxas, George Davey Smith, Tom R. Gaunt, Krishnarajah Nirantharakumar, Murray P. Cox, Donall Forde, Folkert W. Asselbergs, Steve K. Harris, Sylvia Richardson, Reecha Sofat, Richard J. B. Dobson, Aroon D. Hingorani, Riyaz Patel, Jonathan Sterne, Amitava Banerjee, Alastair K. Denniston, Simon Ball, Neil J. Sebire, Nigam H. Shah, Graham R. Foster, Bryan Williams, Harry Hemingway
2021 J jnl
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome.
Bioinform.
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
2021 J jnl
EpiGraphDB: a database and data mining platform for health data science.
Bioinform.
Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
2021 J jnl
Erratum to: EpiGraphDB: a database and data mining platform for health data science.
Bioinform.
Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
2021 J jnl
MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature.
Bioinform.
Benjamin L. Elsworth, Tom R. Gaunt
2021 J jnl
MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes.
Bioinform.
M. K. Sobczyk, Tom R. Gaunt, Lavinia Paternoster
2021 J jnl
Prediction of driver variants in the cancer genome via machine learning methodologies.
Briefings Bioinform.
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
2020 J jnl
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome.
Bioinform.
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
2018 J jnl
FATHMM-XF: accurate prediction of pathogenic point mutations via extended features.
Bioinform.
Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell
2017 J jnl
An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome.
BMC Bioinform.
Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell
2017 J jnl
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals.
BioData Min.
Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie
2017 J jnl
GTB - an online genome tolerance browser.
BMC Bioinform.
Hashem A. Shihab, Mark F. Rogers, Michael Ferlaino, Colin Campbell, Tom R. Gaunt
2017 J jnl
HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics.
Bioinform.
Jie Zheng, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans, Tom R. Gaunt, Ian N. M. Day
2017 J jnl
HIPred: an integrative approach to predicting haploinsufficient genes.
Bioinform.
Hashem A. Shihab, Mark F. Rogers, Colin Campbell, Tom R. Gaunt
2017 J jnl
LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis.
Bioinform.
Jie Zheng, Mesut A. Erzurumluoglu, Benjamin L. Elsworth, John P. Kemp, Laurence J. Howe, Philip C. Haycock, Gibran Hemani, Katherine Tansey, Charles Laurin, Early Genetics, Lifecourse Epidemiology (EAGLE) Eczema Consortium, Beate St. Pourcain, Nicole M. Warrington, Hilary K. Finucane, Alkes L. Price, Brendan K. Bulik-Sullivan, Verneri Anttila, Lavinia Paternoster, Tom R. Gaunt, David M. Evans, Benjamin M. Neale
2015 J jnl
An integrative approach to predicting the functional effects of non-coding and coding sequence variation.
Bioinform.
Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell
2015 — conf
Sequential data selection for predicting the pathogenic effects of sequence variation.
BIBM
Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper
2015 J jnl
Texture classification using feature selection and kernel-based techniques.
Soft Comput.
Carlos Fernandez-Lozano, José Antonio Seoane Fernández, Marcos Gestal, Tom R. Gaunt, Julián Dorado, Colin Campbell
2014 B conf
A Random Forest proximity matrix as a new measure for gene annotation.
ESANN
José A. Seoane, Ian N. M. Day, Juan P. Casas, Colin Campbell, Tom R. Gaunt
2014 J jnl
A pathway-based data integration framework for prediction of disease progression.
Bioinform.
José A. Seoane, Ian N. M. Day, Tom R. Gaunt, Colin Campbell
2014 J jnl
Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery.
PLoS Comput. Biol.
José A. Seoane, Colin Campbell, Ian N. M. Day, Juan P. Casas, Tom R. Gaunt
2014 — conf
Using a Random Forest proximity measure for variable importance stratification in genotypic data.
IWBBIO
José A. Seoane, Ian N. M. Day, Colin Campbell, Juan P. Casas, Tom R. Gaunt
2013 J jnl
Predicting the functional consequences of cancer-associated amino acid substitutions.
Bioinform.
Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt
2013 — conf
Texture Classification Using Kernel-Based Techniques.
IWANN (1)
Carlos Fernandez-Lozano, José A. Seoane, Marcos Gestal, Tom R. Gaunt, Colin Campbell
2007 J jnl
Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'.
BMC Bioinform.
Tom R. Gaunt, Santiago Rodríguez, Ian N. M. Day
2006 J jnl
MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers.
BMC Bioinform.
Tom R. Gaunt, Santiago Rodríguez, Carlos Zapata, Ian N. M. Day