Todd J. Vision

29 papers A* 1Misc 1Journal 13Unranked 12

Year	Rank	Type	Title / Venue / Authors
2019	J	`jnl`	Avoiding "conflicts of interest": A computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Prepr. Prashanti Manda, Alexander Hahn, Katherine Lamm, Scott Provan, Todd J. Vision
2019	J	`jnl`	Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Comput. Sci. Prashanti Manda, Alexander Hahn, Katherine Beekman, Todd J. Vision
2018	—	`ch.`	'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp, James A. Macklin, Chelsea D. Specht, Todd J. Vision, Ramona L. Walls, Carolyn J. Lawrence-Dill
2018	J	`jnl`	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
2018	—	`conf`	On the Statistical Sensitivity of Semantic Similarity Metrics. ICBO Prashanti Manda, Todd J. Vision
2018	—	`ch.`	Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield
2018	—	`conf`	Reasoning over Anatomical Homology in the Phenoscape KB. ICBO Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision
2017	—	`conf`	Evolution of anatomical concept usage over time: mining 200 years of biodiversity literature. SBD@SIGMOD Prashanti Manda, Todd J. Vision
2016	Misc	`conf`	Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision
2016	—	`conf`	Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. ICBO/BioCreative Prashanti Manda, James P. Balhoff, Todd J. Vision
2015	J	`jnl`	What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories. Int. J. Digit. Curation Shea Swauger, Todd J. Vision
2014	J	`jnl`	Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. James P. Balhoff, Wasila M. Dahdul, Thomas Dececchi, Hilmar Lapp, Paula M. Mabee, Todd J. Vision
2014	J	`jnl`	ODIN: the ORCID and DataCite interoperability network. Int. J. Knowl. Learn. Martin Fenner, Laurel L. Haak, Gudmundur A. Thorisson, Sergio Ruiz, Todd J. Vision, Jan Brase
2013	J	`jnl`	The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn
2012	J	`jnl`	Minimizing the number of episodes and Gallai's theorem on intervals CoRR Éva Czabarka, László A. Székely, Todd J. Vision
2011	—	`conf`	Beginning to track 1000 datasets from public repositories into the published literature. ASIST Heather A. Piwowar, Jonathan D. Carlson, Todd J. Vision
2011	J	`jnl`	DataONE: Data Observation Network for Earth - Preserving Data and Enabling Innovation in the Biological and Environmental Sciences. D Lib Mag. William Michener, David Vieglais, Todd J. Vision, John A. Kunze, Patricia Cruse, Greg Janée
2011	—	`conf`	Employing Reasoning within the Phenoscape Knowledgebase. ICBO James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
2011	—	`conf`	Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
2011	—	`conf`	Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. LISC Todd J. Vision, Judith A. Blake, Hilmar Lapp, Paula M. Mabee, Monte Westerfield
2010	—	`conf`	Evaluating data citation and sharing policies in the environmental sciences. ASIST Nicholas M. Weber, Heather A. Piwowar, Todd J. Vision
2010	—	`conf`	Inferring species trees from gene duplication episodes. BCB J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Todd J. Vision
2009	J	`jnl`	A hierarchical model for incomplete alignments in phylogenetic inference. Bioinform. Fuxia Cheng, Stefanie Hartmann, Mayetri Gupta, Joseph G. Ibrahim, Todd J. Vision
2007	J	`jnl`	A computational system to select candidate genes for complex human traits. Bioinform. Kyle J. Gaulton, Karen L. Mohlke, Todd J. Vision
2007	J	`jnl`	Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts. J. Assoc. Inf. Sci. Technol. Bradley M. Hemminger, Billy Saelim, Patrick F. Sullivan, Todd J. Vision
2006	J	`jnl`	Phytome: a platform for plant comparative genomics. Nucleic Acids Res. Stefanie Hartmann, Dihui Lu, Jason Phillips, Todd J. Vision
2003	—	`conf`	Fast identification and statistical evaluation of segmental homologies in comparative maps. ISMB (Supplement of Bioinformatics) Peter P. Calabrese, Sugata Chakravarty, Todd J. Vision
2003	—	`conf`	Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. CSB Jun Huan, Jan F. Prins, Wei Wang, Todd J. Vision
2000	A*	`conf`	Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project. SODA Daniel G. Brown, Todd J. Vision, Steven D. Tanksley