Tiziana Castrignanò

26 papers B 1Journal 20Unranked 5
YearRankTypeTitle / Venue / Authors
2025 — conf
Auto_WGCNA: A Reproducible R Pipeline from Gene Counts to Hub Gene Identification.
BDA (Astronomy, Science, and Engineering)
Federico Giannelli, Manuel Arcieri, Meryam Carrus, Paolo Bottoni, Tiziana Castrignanò
2025 J jnl
HPC-T-Assembly: a pipeline for de novo transcriptome assembly of large multi-specie datasets.
BMC Bioinform.
Franco Liberati, Taiel Maximiliano Pose Marino, Paolo Bottoni, Daniele Canestrelli, Tiziana Castrignanò
2025 J jnl
Reaction systems with self distinction.
Nat. Comput.
Paolo Bottoni, Tiziana Castrignanò, Anna Labella
2024 — conf
HPC-CleanSeq: A Tool for Contamination Removal in Big RNA-Seq Datasets.
BDA (Astronomy, Science, and Engineering)
Franco Liberati, Federico Giannelli, Paolo Bottoni, Tiziana Castrignanò
2024 J jnl
HPC-T-Annotator: an HPC tool for de novo transcriptome assembly annotation.
BMC Bioinform.
Lorenzo Arcioni, Manuel Arcieri, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò
2023 — conf
IGUANER - DIfferential Gene Expression and fUnctionAl aNalyzER.
BDA (Astronomy, Science, and Engineering)
Valentina Pinna, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò
2022 — conf
ParSMURF-NG: A Machine Learning High Performance Computing System for the Analysis of Imbalanced Big Omics Data.
AIAI (Workshops)
Alessandro Petrini, Marco Notaro, Jessica Gliozzo, Tiziana Castrignanò, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini
2021 J jnl
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.
Nucleic Acids Res.
Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi
2020 J jnl
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.
BMC Bioinform.
Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
2020 J jnl
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis.
BMC Bioinform.
Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò
2018 B conf
BioWebEngine: A generation environment for bioinformatics research.
VL/HCC
Paolo Bottoni, Tiziana Castrignanò, Tiziano Flati, Francesco Maggi
2014 — conf
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data.
HPCS
Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole
2013 J jnl
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Nucleic Acids Res.
Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole
2013 J jnl
WEP: a high-performance analysis pipeline for whole-exome data.
BMC Bioinform.
Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò
2012 J jnl
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
Nucleic Acids Res.
Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi
2011 J jnl
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res.
Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
2011 J jnl
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
Bioinform.
Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole
2010 J jnl
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
Briefings Bioinform.
David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole
2009 J jnl
Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells.
Database J. Biol. Databases Curation
Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò
2008 J jnl
ASPicDB: A database resource for alternative splicing analysis.
Bioinform.
Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole
2007 J jnl
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst.
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
2007 J jnl
The MEPS server for identifying protein conformational epitopes.
BMC Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano
2006 J jnl
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Nucleic Acids Res.
Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole
2006 J jnl
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
2006 J jnl
The PMDB Protein Model Database.
Nucleic Acids Res.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano
2004 J jnl
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic Acids Res.
Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole