Ting-Fung Chan

16 papers Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2024 J jnl
Accurate identification of structural variations from cancer samples.
Briefings Bioinform.
Le Li, Chenyang Hong, Jie Xu, Claire Yik-Lok Chung, Alden King-Yung Leung, Delbert Almerick T. Boncan, Lixin Cheng, Kwok-Wai Lo, Paul B. S. Lai, John Wong, Jingying Zhou, Alfred Sze-Lok Cheng, Ting-Fung Chan, Feng Yue, Kevin Y. Yip
2023 J jnl
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics.
Bioinform.
Chen Li, Ting-Fung Chan, Can Yang, Zhixiang Lin
2022 J jnl
Self-supervised contrastive learning for integrative single cell RNA-seq data analysis.
Briefings Bioinform.
Wenkai Han, Yuqi Cheng, Jiayang Chen, Huawen Zhong, Zhihang Hu, Siyuan Chen, Licheng Zong, Liang Hong, Ting-Fung Chan, Irwin King, Xin Gao, Yu Li
2018 J jnl
A comprehensive web tool for toehold switch design.
Bioinform.
Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip
2017 — conf
An iterative algorithm for de novo optical map assembly.
BIBM
Menglu Li, Siu-Ming Yiu, Ting-Fung Chan, Ernest T. Lam
2017 J jnl
OMBlast: alignment tool for optical mapping using a seed-and-extend approach.
Bioinform.
Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan
2017 J jnl
OMTools: a software package for visualizing and processing optical mapping data.
Bioinform.
Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan
2016 — conf
Towards a More Accurate Error Model for BioNano Optical Maps.
ISBRA
Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu
2014 J jnl
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.
Bioinform.
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
2014 — conf
Query Modification through External Sources to Support Clinical Decisions.
TREC
Raymond Wan, Ting-Fung Chan, Jannifer Hiu-Kwan Man
2013 J jnl
Parallel architecture for DNA sequence inexact matching with Burrows-Wheeler Transform.
Microelectron. J.
Yao Xin, Benben Liu, Biao Min, Will X. Y. Li, Ray C. C. Cheung, Anthony S. Fong, Ting-Fung Chan
2013 J jnl
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability.
Briefings Bioinform.
Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider
2013 J jnl
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.
Bioinform.
Jing-Woei Li, Raymond Wan, Chi-Shing Yu, Ngai Na Co, Nathalie Wong, Ting-Fung Chan
2011 J jnl
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.
Bioinform.
Shao-Ke Lou, Bing Ni, Leung-Yau Lo, Stephen Kwok-Wing Tsui, Ting-Fung Chan, Kwong-Sak Leung
2011 J jnl
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length.
BMC Bioinform.
Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan
2010 — conf
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length.
BIBM
Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan