Timothy Miller

62 papers A* 2B 3Journal 34Unranked 23

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Aspect-Oriented Summarization for Psychiatric Short-Term Readmission Prediction. CoRR Wonjin Yoon, Boyu Ren, Spencer Thomas, Chanwhi Kim, Guergana Savova, Mei-Hua Hall, Timothy Miller
2024	J	`jnl`	Automated stratification of trauma injury severity across multiple body regions using multi-modal, multi-class machine learning models. J. Am. Medical Informatics Assoc. Jifan Gao, Guanhua Chen, Ann P. O'Rourke, John R. Caskey, Kyle A. Carey, Madeline Oguss, Anne Stey, Dmitriy Dligach, Timothy Miller, Anoop M. Mayampurath, Matthew M. Churpek, Majid Afshar
2024	J	`jnl`	Identifying Task Groupings for Multi-Task Learning Using Pointwise V-Usable Information. CoRR Yingya Li, Timothy Miller, Steven Bethard, Guergana Savova
2024	J	`jnl`	Improving Clinical NLP Performance through Language Model-Generated Synthetic Clinical Data. CoRR Shan Chen, Jack Gallifant, Marco Guevara, Yanjun Gao, Majid Afshar, Timothy Miller, Dmitriy Dligach, Danielle S. Bitterman
2023	J	`jnl`	Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2023	J	`jnl`	DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. J. Biomed. Informatics Yanjun Gao, Dmitriy Dligach, Timothy Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
2023	—	`conf`	End-to-end clinical temporal information extraction with multi-head attention. BioNLP@ACL Timothy Miller, Steven Bethard, Dmitriy Dligach, Guergana Savova
2023	J	`jnl`	Leveraging A Medical Knowledge Graph into Large Language Models for Diagnosis Prediction. CoRR Yanjun Gao, Ruizhe Li, John R. Caskey, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Majid Afshar
2023	—	`conf`	Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. ClinicalNLP@ACL Brihat Sharma, Yanjun Gao, Timothy Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
2023	J	`jnl`	Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. CoRR Brihat Sharma, Yanjun Gao, Timothy Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
2023	—	`conf`	Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes. BioNLP@ACL Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar
2023	J	`jnl`	Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Majid Afshar
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task. J. Biomed. Informatics Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2023	J	`jnl`	Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
2023	—	`conf`	Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models. ACL (1) Lijing Wang, Yingya Li, Timothy Miller, Steven Bethard, Guergana Savova
2022	J	`jnl`	A scoping review of publicly available language tasks in clinical natural language processing. J. Am. Medical Informatics Assoc. Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	A simple neural vector space model for medical concept normalization using concept embeddings. J. Biomed. Informatics Dongfang Xu, Timothy Miller
2022	J	`jnl`	DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
2022	B	`conf`	Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. LREC Yanjun Gao, Dmitriy Dligach, Timothy Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Summarizing Patients Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar
2022	B	`conf`	Summarizing Patients' Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. COLING Yanjun Gao, Dmitriy Dligach, Timothy Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar
2021	J	`jnl`	A Scoping Review of Publicly Available Language Tasks in Clinical Natural Language Processing. CoRR Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2021	J	`jnl`	BCH-NLP at BioCreative VII Track 3: medications detection in tweets using transformer networks and multi-task learning. CoRR Dongfang Xu, Shan Chen, Timothy Miller
2021	J	`jnl`	Classifying Long Clinical Documents with Pre-trained Transformers. CoRR Xin Su, Timothy Miller, Xiyu Ding, Majid Afshar, Dmitriy Dligach
2021	J	`jnl`	Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2021	J	`jnl`	Depth-Bounded Statistical PCFG Induction as a Model of Human Grammar Acquisition. Comput. Linguistics Lifeng Jin, Lane Schwartz, Finale Doshi-Velez, Timothy Miller, William Schuler
2021	—	`conf`	EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. BioNLP@NAACL-HLT Chen Lin, Timothy Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
2021	J	`jnl`	Pre-training phenotyping classifiers. J. Biomed. Informatics Dmitriy Dligach, Majid Afshar, Timothy Miller
2020	—	`conf`	A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. BioNLP Chen Lin, Timothy Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova
2020	J	`jnl`	Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2020	—	`conf`	Defining and Learning Refined Temporal Relations in the Clinical Narrative. LOUHI@EMNLP Kristin Wright-Bettner, Chen Lin, Timothy Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova
2020	—	`conf`	Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP Danielle S. Bitterman, Timothy Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond H. Mak, Guergana Savova
2019	—	`conf`	Cross-document coreference: An approach to capturing coreference without context. LOUHI@EMNLP Kristin Wright-Bettner, Martha Palmer, Guergana Savova, Piet C. de Groen, Timothy Miller
2019	—	`conf`	Simplified Neural Unsupervised Domain Adaptation. NAACL-HLT (1) Timothy Miller
2019	J	`jnl`	Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse. J. Am. Medical Informatics Assoc. Dmitriy Dligach, Majid Afshar, Timothy Miller
2019	—	`conf`	Two-stage Federated Phenotyping and Patient Representation Learning. BioNLP@ACL Dianbo Liu, Dmitriy Dligach, Timothy Miller
2019	J	`jnl`	Two-stage Federated Phenotyping and Patient Representation Learning. CoRR Dianbo Liu, Dmitriy Dligach, Timothy Miller
2019	—	`conf`	Unsupervised Learning of PCFGs with Normalizing Flow. ACL (1) Lifeng Jin, Finale Doshi-Velez, Timothy Miller, Lane Schwartz, William Schuler
2018	A*	`conf`	Depth-bounding is effective: Improvements and Evaluation of Unsupervised PCFG Induction. EMNLP Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz
2018	J	`jnl`	Depth-bounding is effective: Improvements and evaluation of unsupervised PCFG induction. CoRR Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz
2018	J	`jnl`	FADL: Federated-Autonomous Deep Learning for Distributed Electronic Health Record. CoRR Dianbo Liu, Timothy Miller, Raheel Sayeed, Kenneth D. Mandl
2018	—	`conf`	Learning Patient Representations from Text. *SEM@NAACL-HLT Dmitriy Dligach, Timothy Miller
2018	J	`jnl`	Learning Patient Representations from Text. CoRR Dmitriy Dligach, Timothy Miller
2018	—	`conf`	Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. Louhi@EMNLP Chen Lin, Timothy Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova
2018	—	`conf`	Spotting Spurious Data with Neural Networks. NAACL-HLT Hadi Amiri, Timothy Miller, Guergana Savova
2018	J	`jnl`	Unsupervised Grammar Induction with Depth-bounded PCFG. CoRR Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz
2018	J	`jnl`	Unsupervised Grammar Induction with Depth-bounded PCFG. Trans. Assoc. Comput. Linguistics Lifeng Jin, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz
2017	—	`conf`	Neural Temporal Relation Extraction. EACL (2) Dmitriy Dligach, Timothy Miller, Chen Lin, Steven Bethard, Guergana Savova
2017	A*	`conf`	Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks. EMNLP Hadi Amiri, Timothy Miller, Guergana Savova
2017	—	`conf`	Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. BioNLP Chen Lin, Timothy Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
2017	J	`jnl`	Towards generalizable entity-centric clinical coreference resolution. J. Biomed. Informatics Timothy Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova
2016	—	`conf`	Improving Temporal Relation Extraction with Training Instance Augmentation. BioNLP@ACL Chen Lin, Timothy Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
2016	B	`conf`	Memory-Bounded Left-Corner Unsupervised Grammar Induction on Child-Directed Input. COLING Cory Shain, William Bryce, Lifeng Jin, Victoria Krakovna, Finale Doshi-Velez, Timothy Miller, William Schuler, Lane Schwartz
2016	—	`conf`	Unsupervised Document Classification with Informed Topic Models. BioNLP@ACL Timothy Miller, Dmitriy Dligach, Guergana Savova
2015	—	`conf`	Extracting Time Expressions from Clinical Text. BioNLP@IJCNLP Timothy Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova
2014	—	`conf`	Descending-Path Convolution Kernel for Syntactic Structures. ACL (2) Chen Lin, Timothy Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova
2014	J	`jnl`	Discovering body site and severity modifiers in clinical texts. J. Am. Medical Informatics Assoc. Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy Miller, Guergana K. Savova
2014	J	`jnl`	Temporal Annotation in the Clinical Domain. Trans. Assoc. Comput. Linguistics William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy Miller, Chen Lin, Guergana K. Savova, James Pustejovsky
2013	—	`conf`	Active Learning for Phenotyping Tasks. RANLP (Medicine and Biology) Dmitriy Dligach, Timothy Miller, Guergana Savova
2013	—	`conf`	Discovering Temporal Narrative Containers in Clinical Text. BioNLP@ACL Timothy Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova