Timothy M. McPhillips

44 papers A* 2A 1B 6Journal 15Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CRABS: A syntactic-semantic pincer strategy for bounding LLM interpretation of Python notebooks. CoRR Meng Li, Timothy M. McPhillips, Dingmin Wang, Shin-Rong Tsai, Bertram Ludäscher
2025	J	`jnl`	TROV - A Model and Vocabulary for Describing Transparent Research Objects. Int. J. Digit. Curation Meng Li, Timothy M. McPhillips, Craig Willis, Nikolaus Nova Parulian, Bertram Ludäscher, Kacper Kowalik, Lars Vilhuber, Thu-Mai Lewis, Mandy Gooch
2021	—	`conf`	A Model and System for Querying Provenance from Data Cleaning Workflows. IPAW Nikolaus Nova Parulian, Timothy M. McPhillips, Bertram Ludäscher
2021	—	`conf`	CPR-A Comprehensible Provenance Record for Verification Workflows in Whole Tale. IPAW Timothy M. McPhillips, Thomas Thelen, Craig Willis, Kacper Kowalik, Matthew B. Jones, Bertram Ludäscher
2021	—	`conf`	Detailed Provenance Metadata from Statistical Analysis Software: TaPP Applications Track. TaPP George Alter, Jack Gager, Pascal Heus, Carson Hunter, Sanda Ionescu, Jeremy Iverson, H. V. Jagadish, Bertram Ludäscher, Jared Lyle, Timothy M. McPhillips, Alexander Mueller, Sigve Nordgaard, Ørnulf Risnes, Dan J. Smith, Jie Song, Thomas Thelen
2020	J	`jnl`	Toward Enabling Reproducibility for Data-Intensive Research using the Whole Tale Platform. CoRR Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
2019	—	`conf`	Application of BagIt-Serialized Research Object Bundles for Packaging and Re-Execution of Computational Analyses. eScience Kyle Chard, Thomas Thelen, Matthew J. Turk, Craig Willis, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor
2019	—	`conf`	Modeling Provenance and Understanding Reproducibility for OpenRefine Data Cleaning Workflows. TaPP Timothy M. McPhillips, Lan Li, Nikolaus Nova Parulian, Bertram Ludäscher
2019	—	`conf`	Reproducibility by Other Means: Transparent Research Objects. eScience Timothy M. McPhillips, Craig Willis, Michael R. Gryk, Santiago Núñez-Corrales, Bertram Ludäscher
2019	—	`conf`	Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform. PARCO Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
2018	—	`ch.`	Scientific Workflows. Encyclopedia of Database Systems (2nd ed.) Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips
2018	—	`conf`	Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. IPAW Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2018	J	`jnl`	Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. CoRR Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2017	J	`jnl`	Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance. Int. J. Digit. Curation Qian Zhang, Yang Cao, Qiwen Wang, Duc Vu, Priyaa Thavasimani, Timothy M. McPhillips, Paolo Missier, Peter Slaughter, Christopher Jones, Matthew B. Jones, Bertram Ludäscher
2016	—	`conf`	DataONE: A Data Federation with Provenance Support. IPAW Yang Cao, Christopher Jones, Víctor Cuevas-Vicenttín, Matthew B. Jones, Bertram Ludäscher, Timothy M. McPhillips, Paolo Missier, Christopher R. Schwalm, Peter Slaughter, David Vieglais, Lauren Walker, Yaxing Wei
2016	—	`conf`	Yin & Yang: Demonstrating Complementary Provenance from noWorkflow & YesWorkflow. IPAW João Felipe Pimentel, Saumen C. Dey, Timothy M. McPhillips, Khalid Belhajjame, David Koop, Leonardo Murta, Vanessa Braganholo, Bertram Ludäscher
2015	—	`conf`	Retrospective Provenance Without a Runtime Provenance Recorder. TaPP Timothy M. McPhillips, Shawn Bowers, Khalid Belhajjame, Bertram Ludäscher
2015	J	`jnl`	YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts. CoRR Timothy M. McPhillips, Tianhong Song, Tyler Kolisnik, Steve Aulenbach, Khalid Belhajjame, R. Kyle Bocinsky, Yang Cao, Fernando Chirigati, Saumen C. Dey, Juliana Freire, Deborah N. Huntzinger, Christopher Jones, David Koop, Paolo Missier, Mark Schildhauer, Christopher R. Schwalm, Yaxing Wei, James Cheney, Mark Bieda, Bertram Ludäscher
2012	—	`conf`	Declarative Rules for Inferring Fine-Grained Data Provenance from Scientific Workflow Execution Traces. IPAW Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2012	J	`jnl`	Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository. Int. J. Digit. Curation Paolo Missier, Bertram Ludäscher, Saumen C. Dey, Michael Wang, Timothy M. McPhillips, Shawn Bowers, Michael Agun, Ilkay Altintas
2012	J	`jnl`	Workflows for microarray data processing in the Kepler environment. BMC Bioinform. Thomas Stropp, Timothy M. McPhillips, Bertram Ludäscher, Mark Bieda
2011	B	`conf`	Improving Workflow Fault Tolerance through Provenance-Based Recovery. SSDBM Sven Köhler, Sean Riddle, Daniel Zinn, Timothy M. McPhillips, Bertram Ludäscher
2011	A*	`conf`	Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler. ICDE Lei Dou, Daniel Zinn, Timothy M. McPhillips, Sven Köhler, Sean Riddle, Shawn Bowers, Bertram Ludäscher
2011	B	`conf`	Towards Reliable, Performant Workflows for Streaming-Applications on Cloud Platforms. CCGRID Daniel Zinn, Quinn J. Hart, Timothy M. McPhillips, Bertram Ludäscher, Yogesh Simmhan, Michail Giakkoupis, Viktor K. Prasanna
2010	J	`jnl`	WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences. BMC Bioinform. Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen
2009	B	`conf`	Efficient provenance storage over nested data collections. EDBT Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2009	B	`conf`	Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs. SSDBM Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2009	—	`ch.`	Scientific Process Automation and Workflow Management. Scientific Data Management Bertram Ludäscher, Ilkay Altintas, Shawn Bowers, Julian Cummings, Terence Critchlow, Ewa Deelman, David De Roure, Juliana Freire, Carole A. Goble, Matthew B. Jones, Scott Klasky, Timothy M. McPhillips, Norbert Podhorszki, Cláudio T. Silva, Ian J. Taylor, Mladen A. Vouk
2009	—	`ch.`	Scientific Workflows. Encyclopedia of Database Systems Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips
2009	A	`conf`	Scientific Workflows: Business as Usual? BPM Bertram Ludäscher, Mathias Weske, Timothy M. McPhillips, Shawn Bowers
2009	J	`jnl`	Scientific workflow design for mere mortals. Future Gener. Comput. Syst. Timothy M. McPhillips, Shawn Bowers, Daniel Zinn, Bertram Ludäscher
2009	—	`conf`	Scientific workflow design with data assembly lines. SC-WORKS Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2009	A*	`conf`	X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. ICDE Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2008	B	`conf`	Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding. SSDBM Anne H. H. Ngu, Shawn Bowers, Nicholas Haasch, Timothy M. McPhillips, Terence Critchlow
2008	J	`jnl`	From computation models to models of provenance: the RWS approach. Concurr. Comput. Pract. Exp. Bertram Ludäscher, Norbert Podhorszki, Ilkay Altintas, Shawn Bowers, Timothy M. McPhillips
2008	—	`conf`	Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life. IPAW Shawn Bowers, Timothy M. McPhillips, Sean Riddle, Manish Kumar Anand, Bertram Ludäscher
2008	J	`jnl`	Provenance in collection-oriented scientific workflows. Concurr. Comput. Pract. Exp. Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
2008	J	`jnl`	Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao
2007	—	`conf`	Project Histories: Managing Data Provenance Across Collection-Oriented Scientific Workflow Runs. DILS Shawn Bowers, Timothy M. McPhillips, Martin Wu, Bertram Ludäscher
2007	J	`jnl`	Provenance in Scientific Workflow Systems. IEEE Data Eng. Bull. Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire
2006	—	`conf`	A Model for User-Oriented Data Provenance in Pipelined Scientific Workflows. IPAW Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher, Shirley Cohen, Susan B. Davidson
2006	—	`conf`	Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data. DILS Timothy M. McPhillips, Shawn Bowers, Bertram Ludäscher
2006	B	`conf`	Scientific Workflows: More e-Science Mileage from Cyberinfrastructure. e-Science Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips, Norbert Podhorszki
2005	J	`jnl`	An approach for pipelining nested collections in scientific workflows. SIGMOD Rec. Timothy M. McPhillips, Shawn Bowers