Timothy J. Close

18 papers B 1C 5Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2015 C conf
Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads.
WABI
Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi
2015 J jnl
When less is more: 'slicing' sequencing data improves read decoding accuracy and
Bioinform.
Stefano Lonardi, Seyed Hamid Mirebrahim, Steve Wanamaker, Matthew Alpert, Gianfranco Ciardo, Denisa Duma, Timothy J. Close
2014 — conf
CLARK, accurate and efficient classification of DNA sequences.
BCB
Rachid Ounit, Timothy J. Close, Steve Wanamaker, Stefano Lonardi
2014 — conf
De novo assembly of ultra-deep sequencing data.
BCB
Seyed Hamid Mirebrahim, Timothy J. Close, Stefano Lonardi
2013 J jnl
A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map.
IEEE ACM Trans. Comput. Biol. Bioinform.
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2013 C conf
Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing.
WABI
Denisa Duma, Mary Wootters, Anna C. Gilbert, Hung Q. Ngo, Atri Rudra, Matthew Alpert, Timothy J. Close, Gianfranco Ciardo, Stefano Lonardi
2013 J jnl
Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space.
PLoS Comput. Biol.
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J. Close
2011 J jnl
Accurate Construction of Consensus Genetic Maps via Integer Linear Programming.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yonghui Wu, Timothy J. Close, Stefano Lonardi
2011 J jnl
Barcoding-free BAC Pooling Enables Combinatorial Selective Sequencing of the Barley Gene Space
CoRR
Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close
2009 J jnl
A compartmentalized approach to the assembly of physical maps.
BMC Bioinform.
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2008 C conf
Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming.
WABI
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2008 J jnl
Deconvoluting BAC-Gene Relationships Using a Physical Map.
J. Bioinform. Comput. Biol.
Yonghui Wu, Lan Liu, Timothy J. Close, Stefano Lonardi
2007 C conf
A Compartmentalized Approach to the Assembly of Physical Maps.
BIBE
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
2007 C conf
Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data.
WABI
Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi
2006 J jnl
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets.
BMC Bioinform.
Jie Zheng, Jan T. Svensson, Kavitha Madishetty, Timothy J. Close, Tao Jiang, Stefano Lonardi
2005 J jnl
Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.
Bioinform.
Xinping Cui, Jin Xu, Rehana Asghar, Pascal Condamine, Jan T. Svensson, Steve Wanamaker, Nils Stein, Mikeal Roose, Timothy J. Close
2004 J jnl
Efficient selection of unique and popular oligos for large EST databases.
Bioinform.
Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi
2003 B conf
Efficient Selection of Unique and Popular Oligos for Large EST Databases.
CPM
Jie Zheng, Timothy J. Close, Tao Jiang, Stefano Lonardi