Timothy A. Miller

44 papers B 1Misc 14Journal 21Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Do They Really Know? Evaluating Large Language Models' Ability to Reference and Cite Oncology Guidelines. AIME (2) Pietro Belligoli, Danielle S. Bitterman, Timothy A. Miller
2025	J	`jnl`	Evaluating Retrieval-Augmented Generation vs. Long-Context Input for Clinical Reasoning over EHRs. CoRR Skatje Myers, Dmitriy Dligach, Timothy A. Miller, Samantha Barr, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Majid Afshar
2025	J	`jnl`	Identifying task groupings for multi-task learning using pointwise V-usable information. J. Biomed. Informatics Yingya Li, Timothy A. Miller, Steven Bethard, Guergana Savova
2025	J	`jnl`	LCD benchmark: long clinical document benchmark on mortality prediction for language models. J. Am. Medical Informatics Assoc. Wonjin Yoon, Shan Chen, Yanjun Gao, Zhanzhan Zhao, Dmitriy Dligach, Danielle S. Bitterman, Majid Afshar, Timothy A. Miller
2025	J	`jnl`	Lessons learned on information retrieval in electronic health records: a comparison of embedding models and pooling strategies. J. Am. Medical Informatics Assoc. Skatje Myers, Timothy A. Miller, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Dmitriy Dligach, Majid Afshar
2025	J	`jnl`	Toward digital twins in the intensive care unit: a medication management case study. J. Am. Medical Informatics Assoc. Behnaz Eslami, Majid Afshar, Samie Tootooni, Timothy A. Miller, Matthew M. Churpek, Yanjun Gao, Dmitriy Dligach
2025	—	`conf`	Using tournaments to calculate AUROC for zero-shot classification with LLMs. EMNLP (Findings) Wonjin Yoon, Ian Bulovic, Timothy A. Miller
2025	J	`jnl`	Using tournaments to calculate AUROC for zero-shot classification with LLMs. CoRR Wonjin Yoon, Ian Bulovic, Timothy A. Miller
2024	J	`jnl`	Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. J. Am. Medical Informatics Assoc. Andrew J. McMurry, Daniel Gottlieb, Timothy A. Miller, James R. Jones, Ashish Atreja, Jennifer Crago, Pankaja M. Desai, Brian E. Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip R. O. Payne, Anil J. Saldanha, Prabhu R. V. Shankar, Yauheni Solad, Elizabeth Sprouse, Michael Terry, Adam B. Wilcox, Kenneth D. Mandl
2024	J	`jnl`	Lessons Learned on Information Retrieval in Electronic Health Records: A Comparison of Embedding Models and Pooling Strategies. CoRR Skatje Myers, Timothy A. Miller, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Dmitriy Dligach, Majid Afshar
2024	J	`jnl`	Position Paper On Diagnostic Uncertainty Estimation from Large Language Models: Next-Word Probability Is Not Pre-test Probability. CoRR Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Guanhua Chen, Anoop M. Mayampurath, Matthew M. Churpek, Majid Afshar
2024	—	`conf`	When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? EMNLP (Findings) Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Matthew M. Churpek, Majid Afshar
2024	J	`jnl`	When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? CoRR Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Matthew M. Churpek, Majid Afshar
2023	J	`jnl`	Considerations for health care institutions training large language models on electronic health records. CoRR Weipeng Zhou, Danielle S. Bitterman, Majid Afshar, Timothy A. Miller
2023	J	`jnl`	Improving model transferability for clinical note section classification models using continued pretraining. J. Am. Medical Informatics Assoc. Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller
2023	—	`conf`	Improving the Transferability of Clinical Note Section Classification Models with BERT and Large Language Model Ensembles. ClinicalNLP@ACL Weipeng Zhou, Majid Afshar, Dmitriy Dligach, Yanjun Gao, Timothy A. Miller
2023	J	`jnl`	Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
2023	J	`jnl`	The impact of using an AI chatbot to respond to patient messages. CoRR Shan Chen, Marco Guevara, Shalini Moningi, Frank Hoebers, Hesham Elhalawani, Benjamin H. Kann, Fallon E. Chipidza, Jonathan Leeman, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Maryam Lustberg, Majid Afshar, Danielle S. Bitterman
2022	J	`jnl`	Classifying unstructured electronic consult messages to understand primary care physician specialty information needs. J. Am. Medical Informatics Assoc. Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Delphine S. Tuot, Danielle S. Bitterman, Timothy A. Miller
2021	—	`conf`	SemEval-2021 Task 10: Source-Free Domain Adaptation for Semantic Processing. SemEval@ACL/IJCNLP Egoitz Laparra, Xin Su, Yiyun Zhao, Özlem Uzuner, Timothy A. Miller, Steven Bethard
2021	Misc	`conf`	The SMART Cumulus Text-to-FHIR NLP Pipeline. AMIA Timothy A. Miller, Bin Mao, Dan Gottlieb, Kenneth D. Mandl
2020	Misc	`conf`	Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2020	J	`jnl`	Does BERT need domain adaptation for clinical negation detection? J. Am. Medical Informatics Assoc. Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller
2020	—	`conf`	Incorporating Risk Factor Embeddings in Pre-trained Transformers Improves Sentiment Prediction in Psychiatric Discharge Summaries. ClinicalNLP@EMNLP Xiyu Ding, Mei-Hua Hall, Timothy A. Miller
2020	Misc	`conf`	Learning Hierarchical Transformer-based Representations of Clinical Notes. AMIA Xin Su, Timothy A. Miller, Majid Afshar, Dmitriy Dligach
2020	Misc	`conf`	Learning Patient Representations from Electronic Health Records across Diverse Data Types. AMIA Timothy A. Miller, Dmitriy Dligach, Fei Wang, Yuqi Si, Funda Meric-Bernstam
2020	Misc	`conf`	Understanding eConsult Triage Behavior with Natural Language Processing. AMIA Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Timothy A. Miller
2019	J	`jnl`	Simplified Neural Unsupervised Domain Adaptation. CoRR Timothy A. Miller
2019	J	`jnl`	Supervised methods to extract clinical events from cardiology reports in Italian. J. Biomed. Informatics Natalia Viani, Timothy A. Miller, Carlo Napolitano, Silvia G. Priori, Guergana K. Savova, Riccardo Bellazzi, Lucia Sacchi
2019	Misc	`conf`	Towards a Universal Document-Level Clinical Text Encoder: Methods for Neural Network Pre-training with Applications to Substance Misuse. AMIA Dmitriy Dligach, Majid Afshar, Timothy A. Miller
2017	Misc	`conf`	DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. AMIA Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson
2017	B	`conf`	Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports. AIME Natalia Viani, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Carlo Napolitano, Silvia G. Priori, Riccardo Bellazzi, Lucia Sacchi, Guergana K. Savova
2017	—	`conf`	Unsupervised Domain Adaptation for Clinical Negation Detection. BioNLP Timothy A. Miller, Steven Bethard, Hadi Amiri, Guergana Savova
2016	Misc	`conf`	Feature Portability in Cross-domain Clinical Coreference. AMIA Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova
2016	J	`jnl`	Multilayered temporal modeling for the clinical domain. J. Am. Medical Informatics Assoc. Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova
2015	J	`jnl`	Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova
2015	Misc	`conf`	Robust Sentence Segmentation for Clinical Text. AMIA Timothy A. Miller, Sean Finan, Dmitriy Dligach, Guergana Savova
2015	Misc	`conf`	Semi-supervised Learning for Phenotyping Tasks. AMIA Dmitriy Dligach, Timothy A. Miller, Guergana Savova
2013	Misc	`conf`	Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. AMIA Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova
2013	Misc	`conf`	Discovering Body Site and Severity Modifiers in Clinical Texts. AMIA Dmitriy Dligach, Timothy A. Miller, Guergana Savova
2013	Misc	`conf`	Discovering Time Expressions in Clinical Text. AMIA Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova
2013	Misc	`conf`	Negation's Not Solved: Reconsidering Negation Annotation and Evaluation. AMIA Stephen T. Wu, Timothy A. Miller, James J. Masanz, Matthew Coarr, David Carrell, Scott R. Halgrim, David Harris, Cheryl Clark
2012	J	`jnl`	A system for coreference resolution for the clinical narrative. J. Am. Medical Informatics Assoc. Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova
2012	—	`conf`	Active Learning for Coreference Resolution. BioNLP@HLT-NAACL Timothy A. Miller, Dmitriy Dligach, Guergana Savova