Timo Lassmann

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
SampleExplorer: using language models to discover relevant transcriptome data.
Bioinform.
Wee Loong Chin, Timo Lassmann
2023 J jnl
SAMStat 2: quality control for next generation sequencing data.
Bioinform.
Timo Lassmann
2020 J jnl
Kalign 3: multiple sequence alignment of large datasets.
Bioinform.
Timo Lassmann
2018 J jnl
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
PLoS Comput. Biol.
J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume
2016 J jnl
CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.
Bioinform.
David J. Arenillas, Alistair R. R. Forrest, Hideya Kawaji, Timo Lassmann, Wyeth W. Wasserman, Anthony Mathelier
2016 J jnl
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.
Database J. Biol. Databases Curation
Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel J. L. de Hoon, Hideya Kawaji, Timo Lassmann, Fantom Consortium, Yoshihide Hayashizaki, Alistair R. R. Forrest, Piero Carninci, Albin Sandelin
2015 J jnl
TagDust2: a generic method to extract reads from sequencing data.
BMC Bioinform.
Timo Lassmann
2015 J jnl
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.
PLoS Comput. Biol.
Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple
2014 J jnl
MOIRAI: A Compact Workflow System for CAGE Analysis.
BMC Bioinform.
Timo Lassmann, Akira Hasegawa, Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki
2011 J jnl
SAMStat: monitoring biases in next generation sequencing data.
Bioinform.
Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub
2009 J jnl
TagDust - a program to eliminate artifacts from next generation sequencing data.
Bioinform.
Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub
2007 J jnl
Automatic extraction of reliable regions from multiple sequence alignments.
BMC Bioinform.
Timo Lassmann, Erik L. L. Sonnhammer
2006 J jnl
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Nucleic Acids Res.
Timo Lassmann, Erik L. L. Sonnhammer
2006 J jnl
Pfam: clans, web tools and services.
Nucleic Acids Res.
Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
2005 J jnl
Kalign - an accurate and fast multiple sequence alignment algorithm.
BMC Bioinform.
Timo Lassmann, Erik L. L. Sonnhammer