Tim Hui-Ming Huang

34 papers B 1Misc 2Journal 24Unranked 7
YearRankTypeTitle / Venue / Authors
2022 J jnl
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan
2014 J jnl
A personalized committee classification approach to improving prediction of breast cancer metastasis.
Bioinform.
Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan
2014 J jnl
BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data.
BMC Bioinform.
Zijing Mao, Chifeng Ma, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
2013 — conf
BIMMER: A Bi-layer hidden Markov model for differential methylation analysis.
BIBM
Zijing Mao, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
2012 J jnl
A dynamic time order network for time-series gene expression data analysis.
BMC Syst. Biol.
Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li
2012 J jnl
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.
BMC Bioinform.
Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang
2012 — conf
Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data.
BCB
Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang
2011 J jnl
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Syst. Biol.
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
2011 — conf
An ERα/modulator regulatory network in the breast cancer cells.
GENSiPS
Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li
2011 — conf
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model.
GENSiPS
Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang
2011 J jnl
Comparing Multiple Chip-Sequencing Experiments.
J. Bioinform. Comput. Biol.
Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang
2011 J jnl
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.
Bioinform.
Cenny Taslim, Tim Hui-Ming Huang, Shili Lin
2011 J jnl
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Nucleic Acids Res.
Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2011 J jnl
Identifying hypermethylated CpG islands using a quantile regression model.
BMC Bioinform.
Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin
2011 J jnl
Preprocessing differential methylation hybridization microarray data.
BioData Min.
Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2010 — conf
Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines.
ICIC (1)
Leng Han, Siyuan Zheng, Shuying Sun, Tim Hui-Ming Huang, Zhongming Zhao
2010 J jnl
HRTBLDb: an informative data resource for hormone receptors target binding loci.
Nucleic Acids Res.
Brian A. Kennedy, Wenqing Gao, Tim Hui-Ming Huang, Victor X. Jin
2010 J jnl
Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data.
BMC Syst. Biol.
Fei Gu, Hang-Kai Hsu, Pei-Yin Hsu, Jiejun Wu, Yilin Ma, Jeffrey D. Parvin, Tim Hui-Ming Huang, Victor X. Jin
2009 — conf
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments.
BICoB
Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
2009 J jnl
A robust unified approach to analyzing methylation and gene expression data.
Comput. Stat. Data Anal.
Abbas Khalili, Tim Hui-Ming Huang, Shili Lin
2009 J jnl
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Syst. Biol.
Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2009 J jnl
Comparative study on ChIP-seq data: normalization and binding pattern characterization.
Bioinform.
Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang
2009 — conf
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.
BIBM
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
2009 J jnl
Identifying differentially methylated genes using mixed effect and generalized least square models.
BMC Bioinform.
Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2008 J jnl
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinform.
Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim
2008 J jnl
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands.
BMC Bioinform.
Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul
2008 Misc conf
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.
Pacific Symposium on Biocomputing
Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang
2008 J jnl
Probe signal correction for differential methylation hybridization experiments.
BMC Bioinform.
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
2007 J jnl
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.
BMC Bioinform.
Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin
2006 J jnl
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinform.
Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew
2006 J jnl
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
Nucleic Acids Res.
Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri
2005 J jnl
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
J. Comput. Biol.
Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew
2001 Misc conf
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics.
AMIA
Harpreet K. Monga, Adam L. Asare, Pearlly Yan, Tim Hui-Ming Huang, Charles William Caldwell
1995 B conf
A Fuzzy Logic Rule-Based System for Chromosome Recognition.
CBMS
James M. Keller, Paul D. Gader, Ozy Sjahputera, Charles William Caldwell, Tim Hui-Ming Huang