Tiina Manninen

19 papers Journal 16Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Modeling neuron-astrocyte interactions in neural networks using distributed simulation.
PLoS Comput. Biol.
Han-Jia Jiang, Jugoslava Acimovic, Tiina Manninen, Iiro Ahokainen, Jonas Stapmanns, Mikko Lehtimäki, Markus Diesmann, Sacha J. van Albada, Hans Ekkehard Plesser, Marja-Leena Linne
2023 J jnl
Analysis of Network Models with Neuron-Astrocyte Interactions.
Neuroinformatics
Tiina Manninen, Jugoslava Acimovic, Marja-Leena Linne
2023 J jnl
CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations.
Neuroinformatics
Laura Keto, Tiina Manninen
2020 J jnl
Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex.
PLoS Comput. Biol.
Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne
2018 J jnl
Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures.
Frontiers Neuroinformatics
Tiina Manninen, Jugoslava Acimovic, Riikka Havela, Heidi Teppola, Marja-Leena Linne
2018 J jnl
Computational Models for Calcium-Mediated Astrocyte Functions.
Frontiers Comput. Neurosci.
Tiina Manninen, Riikka Havela, Marja-Leena Linne
2017 — conf
Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain.
ICIC (2)
Riikka Havela, Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne
2017 J jnl
Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability.
Frontiers Neuroinformatics
Tiina Manninen, Riikka Havela, Marja-Leena Linne
2017 J jnl
Sustainable computational science: the ReScience initiative.
CoRR
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
2017 J jnl
Sustainable computational science: the ReScience initiative.
PeerJ Comput. Sci.
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
2011 J jnl
Computational study of noise in a large signal transduction network.
BMC Bioinform.
Jukka Intosalmi, Tiina Manninen, Keijo Ruohonen, Marja-Leena Linne
2011 J jnl
Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models.
EURASIP J. Bioinform. Syst. Biol.
Tiina Manninen, Katri Hituri, Eeva Toivari, Marja-Leena Linne
2010 — conf
Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction.
BCB
Tiina Manninen, Daniel X. Keller
2010 J jnl
Postsynaptic Signal Transduction Models for Long-Term Potentiation and Depression.
Frontiers Comput. Neurosci.
Tiina Manninen, Katri Hituri, Jeanette Hellgren Kotaleski, Kim T. Blackwell, Marja-Leena Linne
2006 J jnl
A novel approach to model neuronal signal transduction using stochastic differential equations.
Neurocomputing
Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen
2006 J jnl
Developing Itô stochastic differential equation models for neuronal signal transduction pathways.
Comput. Biol. Chem.
Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen
2006 — conf
Discrete stochastic simulation of cell signaling: comparison of computational tools.
EMBC
Tiina Manninen, Eeva Makiraatikka, Antti Ylipää, Antti Pettinen, Kalle Leinonen, Marja-Leena Linne
2005 J jnl
Simulation tools for biochemical networks: evaluation of performance and usability.
Bioinform.
Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne
2004 J jnl
A model integrating the cerebellar granule neuron excitability and calcium signaling pathways.
Neurocomputing
Marja-Leena Linne, Tiina Manninen, Tuula O. Jalonen