Tieliu Shi

24 papers Journal 24
YearRankTypeTitle / Venue / Authors
2025 J jnl
VirulentHunter: deep learning-based virulence factor predictor illuminates pathogenicity in diverse microbial contexts.
Briefings Bioinform.
Chen Chen, Yong Xu, Jian Ouyang, Xiangyi Xiong, Pawel P. Labaj, Agnieszka Chmielarczyk, Anna Rózanska, Hao Zhang, Keyang Liu, Tieliu Shi, Jun Wu
2023 J jnl
Gene expression variability across cells and species shapes the relationship between renal resident macrophages and infiltrated macrophages.
BMC Bioinform.
Xiangjun Ji, Junwei Cai, Lixin Liang, Tieliu Shi, Jinghua Liu
2023 J jnl
HiFun: homology independent protein function prediction by a novel protein-language self-attention model.
Briefings Bioinform.
Jun Wu, Haipeng Qing, Jian Ouyang, Jiajia Zhou, Zihao Gao, Christopher E. Mason, Zhichao Liu, Tieliu Shi
2023 J jnl
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
Bioinform.
Jun Wu, Jian Ouyang, Haipeng Qing, Jiajia Zhou, Ruth Roberts, Rania Siam, Lan Wang, Weida Tong, Zhichao Liu, Tieliu Shi
2021 J jnl
AtMAD: Arabidopsis thaliana multi-omics association database.
Nucleic Acids Res.
Yiheng Lan, Ruikun Sun, Jian Ouyang, Wubin Ding, Min-Jun Kim, Jun Wu, Yuhua Li, Tieliu Shi
2020 J jnl
DNMIVD: DNA methylation interactive visualization database.
Nucleic Acids Res.
Wubin Ding, Jiwei Chen, Guoshuang Feng, Geng Chen, Jun Wu, Yongli Guo, Xin Ni, Tieliu Shi
2018 J jnl
PedAM: a database for Pediatric Disease Annotation and Medicine.
Nucleic Acids Res.
Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Xin Li, Yunxiang Liang, Dongming Guo, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi
2018 J jnl
TCMID 2.0: a comprehensive resource for TCM.
Nucleic Acids Res.
Lin Huang, Duoli Xie, Yiran Yu, Huanlong Liu, Yan Shi, Tieliu Shi, Chengping Wen
2018 J jnl
eRAM: encyclopedia of rare disease annotations for precision medicine.
Nucleic Acids Res.
Jinmeng Jia, Zhongxin An, Yue Ming, Yongli Guo, Wei Li, Yunxiang Liang, Dongming Guo, Xin Li, Jun Tai, Geng Chen, Yaqiong Jin, Zhimei Liu, Xin Ni, Tieliu Shi
2017 J jnl
AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis.
Nucleic Acids Res.
Qi Lv, Yiheng Lan, Yan Shi, Huan Wang, Xia Pan, Peng Li, Tieliu Shi
2017 J jnl
dbSAP: single amino-acid polymorphism database for protein variation detection.
Nucleic Acids Res.
Ruifang Cao, Yan Shi, Shuangguan Chen, Yimin Ma, Jiajun Chen, Juan Yang, Geng Chen, Tieliu Shi
2016 J jnl
Ligand cluster-based protein network and ePlatton, a multi-target ligand finder.
J. Cheminformatics
Yu Du, Tieliu Shi
2015 J jnl
PubAngioGen: a database and knowledge for angiogenesis and related diseases.
Nucleic Acids Res.
Peng Li, Yongrui Liu, Huan Wang, Yuan He, Xue Wang, Yundong He, Fang Lv, Huaqing Chen, Xiufeng Pang, Mingyao Liu, Tieliu Shi, Zhengfang Yi
2014 J jnl
Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach.
Bioinform.
Pengzhan Hu, Zhongchao Shen, Haibo Tu, Li Zhang, Tieliu Shi
2013 J jnl
TCMID: traditional Chinese medicine integrative database for herb molecular mechanism analysis.
Nucleic Acids Res.
Ruichao Xue, Zhao Fang, Meixia Zhang, Zhenghui Yi, Chengping Wen, Tieliu Shi
2011 J jnl
A transcriptional dynamic network during Arabidopsis thaliana pollen development.
BMC Syst. Biol.
Jigang Wang, Xiaojie Qiu, Yuhua Li, Youping Deng, Tieliu Shi
2011 J jnl
AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for
Nucleic Acids Res.
Peng Li, Weidong Zang, Yuhua Li, Feng Xu, Jigang Wang, Tieliu Shi
2011 J jnl
Exploring virus relationships based on virus-host protein-protein interaction network.
BMC Syst. Biol.
Feng Xu, Chen Zhao, Yuhua Li, Jiang Li, Youping Deng, Tieliu Shi
2010 J jnl
HLungDB: an integrated database of human lung cancer research.
Nucleic Acids Res.
Lishan Wang, Yuanyuan Xiong, Yihua Sun, Zhaoyuan Fang, Li Li, Hongbin Ji, Tieliu Shi
2008 J jnl
AtPID:
Nucleic Acids Res.
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi
2007 J jnl
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinform.
Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
2006 J jnl
Demonstration of two novel methods for predicting functional siRNA efficiency.
BMC Bioinform.
Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li
2006 J jnl
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.
PLoS Comput. Biol.
Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li
2005 J jnl
Refined phylogenetic profiles method for predicting protein-protein interactions.
Bioinform.
Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li