Tiejun Cheng

28 papers Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A resource description framework (RDF) model of named entity co-occurrences in biomedical literature and its integration with PubChemRDF.
J. Cheminformatics
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton
2025 — conf
PubChemRDF on the Google Cloud Platform.
SWAT4HCLS
Sunghwan Kim, Bo Yu, Jia He, Qingliang Li, Tiejun Cheng, Siqian He, Hannah Bast, Johannes Kalmbach, Evan E. Bolton
2025 J jnl
Summarizing relationships between chemicals, genes, proteins, and diseases in PubChem using analysis of their co-occurrences in patents.
J. Cheminformatics
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Sunghwan Kim, Paul A. Thiessen, Evan E. Bolton
2023 J jnl
PubChem 2023 update.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton
2023 — conf
Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF.
SWAT4HCLS
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton
2021 J jnl
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem.
Frontiers Res. Metrics Anal.
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton
2021 J jnl
PubChem in 2021: new data content and improved web interfaces.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
2020 J jnl
Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
Nucleic Acids Res.
Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed, Tiejun Cheng, Evan Bolton, Irene Papatheodorou, Lincoln Stein, Doreen Ware, Pankaj Jaiswal
2019 J jnl
PUG-View: programmatic access to chemical annotations integrated in PubChem.
J. Cheminformatics
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton
2019 J jnl
PubChem 2019 update: improved access to chemical data.
Nucleic Acids Res.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton
2018 J jnl
An update on PUG-REST: RESTful interface for programmatic access to PubChem.
Nucleic Acids Res.
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton
2018 J jnl
Risk scenario prediction for sudden water pollution accidents based on Bayesian networks.
Int. J. Syst. Assur. Eng. Manag.
Tiejun Cheng, Panpan Wang, Qianyi Lu
2017 J jnl
Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge.
J. Cheminformatics
Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H. Bryant, Yanli Wang
2017 J jnl
PubChem BioAssay: 2017 update.
Nucleic Acids Res.
Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang
2017 J jnl
Research on the adaptability evaluation model for emergency response plan based on 2-tuple linguistic.
Int. J. Syst. Assur. Eng. Manag.
Tiejun Cheng, Qianli Xu, Fengping Wu
2017 J jnl
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites.
Bioinform.
Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H. Bryant, Yanli Wang
2016 J jnl
Literature information in PubChem: associations between PubChem records and scientific articles.
J. Cheminformatics
Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant
2014 J jnl
Pathway Analysis for Drug Repositioning Based on Public Database Mining.
J. Chem. Inf. Model.
Yongmei Pan, Tiejun Cheng, Yanli Wang, Stephen H. Bryant
2014 J jnl
PubChem BioAssay: 2014 update.
Nucleic Acids Res.
Yanli Wang, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant
2012 J jnl
FSelector: a Ruby gem for feature selection.
Bioinform.
Tiejun Cheng, Yanli Wang, Stephen H. Bryant
2011 J jnl
Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection.
J. Chem. Inf. Model.
Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant
2011 J jnl
Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining.
J. Chem. Inf. Model.
Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant
2010 J jnl
A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction.
BMC Bioinform.
Tiejun Cheng, Zhihai Liu, Renxiao Wang
2010 J jnl
Evaluation of the performance of four molecular docking programs on a diverse set of protein-ligand complexes.
J. Comput. Chem.
Xun Li, Yan Li, Tiejun Cheng, Zhihai Liu, Renxiao Wang
2010 J jnl
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules.
Bioinform.
Tiejun Cheng, Yanli Wang, Stephen H. Bryant
2009 J jnl
Comparative Assessment of Scoring Functions on a Diverse Test Set.
J. Chem. Inf. Model.
Tiejun Cheng, Xun Li, Yan Li, Zhihai Liu, Renxiao Wang
2007 J jnl
Automatic Perception of Organic Molecules Based on Essential Structural Information.
J. Chem. Inf. Model.
Yuan Zhao, Tiejun Cheng, Renxiao Wang
2007 J jnl
Computation of Octanol-Water Partition Coefficients by Guiding an Additive Model with Knowledge.
J. Chem. Inf. Model.
Tiejun Cheng, Yuan Zhao, Xun Li, Fu Lin, Yong Xu, Xing-long Zhang, Yan Li, Renxiao Wang, Luhua Lai