Tianyu Xie

19 papers A* 6Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
ARTreeFormer: A faster attention-based autoregressive model for phylogenetic inference.
PLoS Comput. Biol.
Tianyu Xie, Yicong Mao, Cheng Zhang
2025 J jnl
Any-Order GPT as Masked Diffusion Model: Decoupling Formulation and Architecture.
CoRR
Shuchen Xue, Tianyu Xie, Tianyang Hu, Zijin Feng, Jiacheng Sun, Kenji Kawaguchi, Zhenguo Li, Zhi-Ming Ma
2025 A* conf
Continuous Semi-Implicit Models.
ICML
Longlin Yu, Jiajun Zha, Tong Yang, Tianyu Xie, Xiangyu Zhang, S.-H. Gary Chan, Cheng Zhang
2025 J jnl
Continuous Semi-Implicit Models.
CoRR
Longlin Yu, Jiajun Zha, Tong Yang, Tianyu Xie, Xiangyu Zhang, S.-H. Gary Chan, Cheng Zhang
2025 A* conf
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders.
ICLR
Tianyu Xie, Harry Richman, Jiansi Gao, Frederick A. Matsen IV, Cheng Zhang
2025 J jnl
PhyloVAE: Unsupervised Learning of Phylogenetic Trees via Variational Autoencoders.
CoRR
Tianyu Xie, Harry Richman, Jiansi Gao, Frederick A. Matsen IV, Cheng Zhang
2025 J jnl
Provable Sample-Efficient Transfer Learning Conditional Diffusion Models via Representation Learning.
CoRR
Ziheng Cheng, Tianyu Xie, Shiyue Zhang, Cheng Zhang
2025 J jnl
Variational Autoencoding Discrete Diffusion with Enhanced Dimensional Correlations Modeling.
CoRR
Tianyu Xie, Shuchen Xue, Zijin Feng, Tianyang Hu, Jiacheng Sun, Zhenguo Li, Cheng Zhang
2024 J jnl
Diffusion-PINN Sampler.
CoRR
Zhekun Shi, Longlin Yu, Tianyu Xie, Cheng Zhang
2024 J jnl
Improving tree probability estimation with stochastic optimization and variance reduction.
Stat. Comput.
Tianyu Xie, Musu Yuan, Minghua Deng, Cheng Zhang
2024 A* conf
Kernel Semi-Implicit Variational Inference.
ICML
Ziheng Cheng, Longlin Yu, Tianyu Xie, Shiyue Zhang, Cheng Zhang
2024 J jnl
Kernel Semi-Implicit Variational Inference.
CoRR
Ziheng Cheng, Longlin Yu, Tianyu Xie, Shiyue Zhang, Cheng Zhang
2024 A* conf
Reflected Flow Matching.
ICML
Tianyu Xie, Yu Zhu, Longlin Yu, Tong Yang, Ziheng Cheng, Shiyue Zhang, Xiangyu Zhang, Cheng Zhang
2024 J jnl
Reflected Flow Matching.
CoRR
Tianyu Xie, Yu Zhu, Longlin Yu, Tong Yang, Ziheng Cheng, Shiyue Zhang, Xiangyu Zhang, Cheng Zhang
2024 J jnl
Variational Bayesian Phylogenetic Inference with Semi-implicit Branch Length Distributions.
CoRR
Tianyu Xie, Frederick A. Matsen IV, Marc A. Suchard, Cheng Zhang
2023 A* conf
ARTree: A Deep Autoregressive Model for Phylogenetic Inference.
NeurIPS
Tianyu Xie, Cheng Zhang
2023 J jnl
ARTree: A Deep Autoregressive Model for Phylogenetic Inference.
CoRR
Tianyu Xie, Cheng Zhang
2023 A* conf
Hierarchical Semi-Implicit Variational Inference with Application to Diffusion Model Acceleration.
NeurIPS
Longlin Yu, Tianyu Xie, Yu Zhu, Tong Yang, Xiangyu Zhang, Cheng Zhang
2023 J jnl
Hierarchical Semi-Implicit Variational Inference with Application to Diffusion Model Acceleration.
CoRR
Longlin Yu, Tianyu Xie, Yu Zhu, Tong Yang, Xiangyu Zhang, Cheng Zhang