Thomas Walter - RankMe

36 papers B 1C 1Journal 19Unranked 15

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	MIPHEI-ViT: Multiplex immunofluorescence prediction from H&E images using ViT foundation models. Comput. Biol. Medicine Guillaume Balezo, Roger Trullo, Albert Pla Planas, Etienne Decencière, Thomas Walter
2025	J	`jnl`	A deep learning approach for time-consistent cell cycle phase prediction from microscopy data. PLoS Comput. Biol. Thomas Bonte, Oriane Pourcelot, Adham Safieddine, Floric Slimani, Florian Müller, Dominique Weil, Edouard Bertrand, Thomas Walter
2025	J	`jnl`	Efficient Fine-Tuning of DINOv3 Pretrained on Natural Images for Atypical Mitotic Figure Classification in MIDOG 2025. CoRR Guillaume Balezo, Raphaël Bourgade, Thomas Walter
2025	J	`jnl`	MIPHEI-ViT: Multiplex Immunofluorescence Prediction from H&E Images using ViT Foundation Models. CoRR Guillaume Balezo, Roger Trullo, Albert Pla Planas, Etienne Decencière, Thomas Walter
2025	J	`jnl`	Robust Pan-Cancer Mitotic Figure Detection with YOLOv12. CoRR Raphaël Bourgade, Guillaume Balezo, Thomas Walter
2024	J	`jnl`	Interpretable Embeddings for Segmentation-Free Single-Cell Analysis in Multiplex Imaging. CoRR Simon Gutwein, Daria Lazic, Thomas Walter, Sabine Taschner-Mandl, Roxane Licandro
2023	—	`conf`	Giga-SSL: Self-Supervised Learning for Gigapixel Images. CVPR Workshops Tristan Lazard, Marvin Lerousseau, Etienne Decencière, Thomas Walter
2023	J	`jnl`	Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation. CoRR Thomas Bonte, Maxence Philbert, Emeline Coleno, Edouard Bertrand, Arthur Imbert, Thomas Walter
2023	J	`jnl`	PointFISH - learning point cloud representations for RNA localization patterns. CoRR Arthur Imbert, Florian Müller, Thomas Walter
2023	—	`conf`	Simple and Efficient Confidence Score for Grading Whole Slide Images. MIDL Mélanie Lubrano, Yaëlle Bellahsen-Harrar, Rutger R. H. Fick, Cécile Badoual, Thomas Walter
2023	J	`jnl`	Simple and Efficient Confidence Score for Grading Whole Slide Images. CoRR Mélanie Lubrano, Yaëlle Bellahsen-Harrar, Rutger Fick, Cécile Badoual, Thomas Walter
2022	—	`conf`	Automatic Grading of Cervical Biopsies by Combining Full and Self-supervision. ECCV Workshops (7) Mélanie Lubrano, Tristan Lazard, Guillaume Balezo, Yaëlle Bellahsen-Harrar, Cécile Badoual, Sylvain Berlemont, Thomas Walter
2022	J	`jnl`	Giga-SSL: Self-Supervised Learning for Gigapixel Images. CoRR Tristan Lazard, Marvin Lerousseau, Etienne Decencière, Thomas Walter
2022	—	`conf`	Learning with Minimal Effort: Leveraging in Silico Labeling for Cell and Nucleus Segmentation. ECCV Workshops (4) Thomas Bonte, Maxence Philbert, Emeline Coleno, Edouard Bertrand, Arthur Imbert, Thomas Walter
2022	—	`conf`	PointFISH: Learning Point Cloud Representations for RNA Localization Patterns. ECCV Workshops (4) Arthur Imbert, Florian Müller, Thomas Walter
2020	J	`jnl`	Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen. Bioinform. Joseph Boyd, Alice Pinheiro, Elaine Del Nery, Fabien Reyal, Thomas Walter
2020	—	`conf`	Experimentally-Generated Ground Truth for Detecting Cell Types in an Image-Based Immunotherapy Screen. ISBI Joseph Boyd, Zelia Gouveia, Franck Perez, Thomas Walter
2019	—	`conf`	A Deep Learning Approach To Identify MRNA Localization Patterns. ISBI Rémy Dubois, Arthur Imbert, Aubin Samacoïts, Marion Peter, Edouard Bertrand, Florian Müller, Thomas Walter
2019	—	`conf`	Predicting Residual Cancer Burden In A Triple Negative Breast Cancer Cohort. ISBI Peter Naylor, Joseph Boyd, Marick Laé, Fabien Reyal, Thomas Walter
2019	J	`jnl`	Segmentation of Nuclei in Histopathology Images by Deep Regression of the Distance Map. IEEE Trans. Medical Imaging Peter Naylor, Marick Lae, Fabien Reyal, Thomas Walter
2018	—	`conf`	Analysing double-strand breaks in cultured cells for drug screening applications by causal inference. ISBI Joseph Boyd, Alice Pinhiero, Elaine Del Nery, Fabien Reyal, Thomas Walter
2017	—	`conf`	Nuclei segmentation in histopathology images using deep neural networks. ISBI Peter Naylor, Marick Lae, Fabien Reyal, Thomas Walter
2016	—	`conf`	New general features based on superpixels for image segmentation learning. ISBI Vaïa Machairas, Thérèse Baldeweck, Thomas Walter, Etienne Decencière
2015	J	`jnl`	A generic methodological framework for studying single cell motility in high-throughput time-lapse data. Bioinform. Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert, Thomas Walter
2015	J	`jnl`	Assessment of algorithms for mitosis detection in breast cancer histopathology images. Medical Image Anal. Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim
2015	—	`conf`	Infering an ontology of single cell motions from high-throughput microscopy data. ISBI Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert, Thomas Walter
2015	C	`conf`	Spatial Repulsion Between Markers Improves Watershed Performance. ISMM Vaïa Machairas, Etienne Decencière, Thomas Walter
2015	J	`jnl`	Waterpixels. IEEE Trans. Image Process. Vaïa Machairas, Matthieu Faessel, David Cárdenas-Peña, Théodore Chabardès, Thomas Walter, Etienne Decencière
2014	J	`jnl`	Assessment of algorithms for mitosis detection in breast cancer histopathology images. CoRR Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim
2014	B	`conf`	Waterpixels: Superpixels based on the watershed transformation. ICIP Vaïa Machairas, Etienne Decencière, Thomas Walter
2013	J	`jnl`	Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. BMC Bioinform. Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber
2008	—	`conf`	A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - computational aspects and challenges. ISBI Thomas Walter, Michael Held, Beate Neumann, Jean-Karim Hériché, Christian Conrad, Rainer Pepperkok, Jan Ellenberg
2007	J	`jnl`	Automatic detection of microaneurysms in color fundus images. Medical Image Anal. Thomas Walter, Pascale Massin, Ali Erginay, Richard Ordonez, Clotilde Jeulin, Jean-Claude Klein
2002	J	`jnl`	A Contribution of Image Processing to the Diagnosis of Diabetic Retinopathy - Detection of Exudates in Color Fundus Images of the Human Retina. IEEE Trans. Medical Imaging Thomas Walter, Jean-Claude Klein, Pascale Massin, Ali Erginay
2002	—	`conf`	Automatic Detection of Microaneurysms in Color Fundus Images of the Human Retina by Means of the Bounding Box Closing. ISMDA Thomas Walter, Jean-Claude Klein
2001	—	`conf`	Segmentation of Color Fundus Images of the Human Retina: Detection of the Optic Disc and the Vascular Tree Using Morphological Techniques. ISMDA Thomas Walter, Jean-Claude Klein