Thomas Steinke

47 papers A* 1A 3B 1Journal 21Unranked 19

Year	Rank	Type	Title / Venue / Authors
2024	A*	`conf`	Efficient and Near-Optimal Noise Generation for Streaming Differential Privacy. FOCS Krishnamurthy Dj Dvijotham, H. Brendan McMahan, Krishna Pillutla, Thomas Steinke, Abhradeep Thakurta
2023	J	`jnl`	Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods. CoRR Fatemeh Chegini, Thomas Steinke, Martin Weiser
2022	—	`conf`	A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs. H2RC@SC Steffen Christgau, Marius Knaust, Thomas Steinke
2022	A	`conf`	Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA. FPGA Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke
2022	J	`jnl`	The HighPerMeshes framework for numerical algorithms on unstructured grids. Concurr. Comput. Pract. Exp. Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende
2021	—	`conf`	Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs. IWOCL Tobias Baumann, Matthias Noack, Thomas Steinke
2020	—	`conf`	HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids. Euro-Par Workshops Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende
2020	—	`conf`	Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS. MCHPC@SC Steffen Christgau, Thomas Steinke
2020	—	`conf`	Porting a Legacy CUDA Stencil Code to oneAPI. IPDPS Workshops Steffen Christgau, Thomas Steinke
2019	—	`conf`	Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA. IPDPS Workshops Matthias Noack, Erich Focht, Thomas Steinke
2019	—	`conf`	OpenMP to FPGA Offloading Prototype Using OpenCL SDK. IPDPS Workshops Marius Knaust, Florian Mayer, Thomas Steinke
2019	—	`conf`	Using FPGAs to Accelerate HPC and Data Analytics on Intel-Based Systems. ISC Workshops Thomas Steinke, Estela Suarez, Taisuke Boku, Nalini Kumar, David E. Martin
2018	—	`conf`	DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion. IPDPS Workshops Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke
2018	J	`jnl`	Porting the MPI-parallelised LES model PALM to multi-GPU systems and many integrated core processors - an experience report. Int. J. Comput. Sci. Eng. Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen
2017	—	`conf`	KART - A Runtime Compilation Library for Improving HPC Application Performance. ISC Workshops Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke
2016	—	`ch.`	FFMK: A Fast and Fault-Tolerant Microkernel-Based System for Exascale Computing. Software for Exascale Computing Carsten Weinhold, Adam Lackorzynski, Jan Bierbaum, Martin Küttler, Maksym Planeta, Hermann Härtig, Amnon Shiloh, Ely Levy, Tal Ben-Nun, Amnon Barak, Thomas Steinke, Thorsten Schütt, Jan Fajerski, Alexander Reinefeld, Matthias Lieber, Wolfgang E. Nagel
2016	—	`ch.`	Fast In-Memory Checkpointing with POSIX API for Legacy Exascale-Applications. Software for Exascale Computing Jan Fajerski, Matthias Noack, Alexander Reinefeld, Florian Schintke, Thorsten Schütt, Thomas Steinke
2016	—	`conf`	Portable SIMD Performance with OpenMP* 4.x Compiler Directives. Euro-Par Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Chris J. Newburn, Georg Zitzlsberger
2015	J	`jnl`	An automated approach for estimating the memory footprint of nonlinear data objects. Concurr. Comput. Pract. Exp. Sebastian Dreßler, Thomas Steinke
2014	A	`conf`	A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters. SC Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes
2014	—	`conf`	Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads. Euro-Par Florian Wende, Thomas Steinke, Frank Cordes
2014	J	`jnl`	Energy consumption of CUDA kernels with varying thread topology. Comput. Sci. Res. Dev. Sebastian Dreßler, Thomas Steinke
2014	J	`jnl`	Standards-based metadata management for molecular simulations. Concurr. Comput. Pract. Exp. Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm P. Atkinson, Jens Krüger
2013	—	`conf`	An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects. Euro-Par Workshops Sebastian Dreßler, Thomas Steinke
2013	J	`jnl`	Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing. J. Parallel Distributed Comput. Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke
2013	A	`conf`	Swendsen-Wang multi-cluster algorithm for the 2D/3D Ising model on Xeon Phi and GPU. SC Florian Wende, Thomas Steinke
2013	J	`jnl`	The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment. J. Cheminformatics Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink
2012	J	`jnl`	A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics. J. Grid Comput. Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
2012	J	`jnl`	Comparing the implementation of two-dimensional numerical quadrature on GPU, FPGA and ClearSpeed systems to study electron scattering by atoms. Concurr. Comput. Pract. Exp. Charles J. Gillan, Thomas Steinke, J. Bock, S. Borchert, Ivor T. A. Spence, N. Stanley Scott
2012	J	`jnl`	High-Performance Reconfigurable Computing. Int. J. Reconfigurable Comput. Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke
2012	J	`jnl`	MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment. J. Cheminformatics Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2012	J	`jnl`	Solutions for biomedical grid computing - Case studies from the D-Grid project Services@MediGRID. J. Comput. Sci. Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias A. Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax
2011	—	`conf`	Granular Security for a Science Gateway in Structural Bioinformatics. IWSG-Life Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
2011	J	`jnl`	MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science. J. Cheminformatics Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2011	J	`jnl`	Molecular simulation grid. J. Cheminformatics Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2010	J	`jnl`	PTGL: a database for secondary structure-based protein topologies. Nucleic Acids Res. Patrick May, Annika Kreuchwig, Thomas Steinke, Ina Koch
2010	B	`conf`	Programming Challenges for the Implementation of Numerical Quadrature in Atomic Physics on FPGA and GPU Accelerators. CCGRID Charles J. Gillan, Thomas Steinke, J. Bock, S. Borchert, Ivor T. A. Spence, N. Stanley Scott
2009	J	`jnl`	Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. Algorithms Raphael André Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz M. Bujnicki, Robert Preissner
2009	J	`jnl`	MediGRID: Towards a user friendly secured grid infrastructure. Future Gener. Comput. Syst. Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias A. Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michal Vossberg, Fred Viezens, Anette Weisbecker
2009	—	`conf`	Visualization in Health Grid Environments: A Novel Service and Business Approach. GECON Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias A. Knoch, Ulrich Sax
2006	—	`conf`	Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. GCCB Patrick May, Gunnar W. Klau, Markus Bauer, Thomas Steinke
2006	J	`jnl`	Connectivity independent protein-structure alignment: a hierarchical approach. BMC Bioinform. Björn Kolbeck, Patrick May, Tobias Schmidt-Goenner, Thomas Steinke, Ernst-Walter Knapp
2006	—	`conf`	ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services. Euro-Par Patrick May, Hans-Christian Ehrlich, Thomas Steinke
2005	J	`jnl`	Columba: an integrated database of proteins, structures, and annotations. BMC Bioinform. Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser
2004	—	`conf`	Columba: Multidimensional Data Integration of Protein Annotations. DILS Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser
2001	J	`jnl`	Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes. J. Comput. Chem. Michael Meyer, Thomas Steinke, Maria Brandl, Jürgen Sühnel
1999	—	`conf`	Density functional study of guanine quartet structures. German Conference on Bioinformatics Michael Meyer, Thomas Steinke, Jürgen Sühnel, Maria Brandl