Thomas Savage

16 papers A* 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Respiratory Status Detection with Video Transformers.
CoRR
Thomas Savage, Evan Madill
2025 J jnl
Benchmarking proprietary and open-source language and vision-language models for gastroenterology clinical reasoning.
npj Digit. Medicine
Seyed Amir Ahmad Safavi-Naini, Shuhaib Ali, Omer Shahab, Zahra Shahhoseini, Thomas Savage, Sara Rafiee, Jamil S. Samaan, Reem Al Shabeeb, Farah Ladak, Jamie O. Yang, Juan Echavarria, Sumbal Babar, Aasma Shaukat, Samuel Margolis, Nicholas P. Tatonetti, Girish N. Nadkarni, Bara El Kurdi, Ali Soroush
2025 J jnl
Conversation Forests: The Key to Fine Tuning Large Language Models for Multi-Turn Medical Conversations is Branching.
CoRR
Thomas Savage
2025 J jnl
Establishing best practices in large language model research: an application to repeat prompting.
J. Am. Medical Informatics Assoc.
Robert Gallo, Michael T. M. Baiocchi, Thomas Savage, Jonathan H. Chen
2025 J jnl
Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment.
J. Am. Medical Informatics Assoc.
Thomas Savage, John Wang, Robert Gallo, Abdessalem Boukil, Vishwesh Patel, Seyed Amir Ahmad Safavi-Naini, Ali Soroush, Jonathan H. Chen
2025 J jnl
Self-Reported Confidence of Large Language Models in Gastroenterology: Analysis of Commercial, Open-Source, and Quantized Models.
CoRR
Nariman Naderi, Seyed Amir Ahmad Safavi-Naini, Thomas Savage, Zahra Atf, Peter Lewis, Girish N. Nadkarni, Ali Soroush
2025 J jnl
The challenge of uncertainty quantification of large language models in medicine.
CoRR
Zahra Atf, Seyed Amir Ahmad Safavi-Naini, Peter Lewis, Aref Mahjoubfar, Nariman Naderi, Thomas Savage, Ali Soroush
2024 J jnl
Diagnostic reasoning prompts reveal the potential for large language model interpretability in medicine.
npj Digit. Medicine
Thomas Savage, Ashwin Nayak, Robert Gallo, Ekanath Rangan, Jonathan H. Chen
2024 J jnl
Fine Tuning Large Language Models for Medicine: The Role and Importance of Direct Preference Optimization.
CoRR
Thomas Savage, Stephen Ma, Abdessalem Boukil, Vishwesh Patel, Ekanath Rangan, Ivan Rodriguez, Jonathan H. Chen
2024 J jnl
Large Language Models versus Classical Machine Learning: Performance in COVID-19 Mortality Prediction Using High-Dimensional Tabular Data.
CoRR
Mohammadreza Ghaffarzadeh-Esfahani, Mahdi Ghaffarzadeh-Esfahani, Arian Salahi-Niri, Hossein Toreyhi, Zahra Atf, Amirali Mohsenzadeh-Kermani, Mahshad Sarikhani, Zohreh Tajabadi, Fatemeh Shojaeian, Mohammad Hassan Bagheri, Aydin Feyzi, Mohammadamin Tarighatpayma, Narges Gazmeh, Fateme Heydari, Hossein Afshar, Amirreza Allahgholipour, Farid Alimardani, Ameneh Salehi, Naghmeh Asadimanesh, Mohammad Amin Khalafi, Hadis Shabanipour, Ali Moradi, Sajjad Hossein Zadeh, Omid Yazdani, Romina Esbati, Moozhan Maleki, Danial Samiei Nasr, Amirali Soheili, Hossein Majlesi, Saba Shahsavan, Alireza Soheilipour, Nooshin Goudarzi, Erfan Taherifard, Hamidreza Hatamabadi, Jamil S. Samaan, Thomas Savage, Ankit Sakhuja, Ali Soroush, Girish N. Nadkarni, Ilad Alavi Darazam, Mohamad Amin Pourhoseingholi, Seyed Amir Ahmad Safavi-Naini
2024 A* conf
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records.
AAAI
Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah
2024 J jnl
Vision-Language and Large Language Model Performance in Gastroenterology: GPT, Claude, Llama, Phi, Mistral, Gemma, and Quantized Models.
CoRR
Seyed Amir Ahmad Safavi-Naini, Shuhaib Ali, Omer Shahab, Zahra Shahhoseini, Thomas Savage, Sara Rafiee, Jamil S. Samaan, Reem Al Shabeeb, Farah Ladak, Jamie O. Yang, Juan Echavarria, Sumbal Babar, Aasma Shaukat, Samuel Margolis, Nicholas P. Tatonetti, Girish N. Nadkarni, Bara El Kurdi, Ali Soroush
2023 J jnl
Diagnostic Reasoning Prompts Reveal the Potential for Large Language Model Interpretability in Medicine.
CoRR
Thomas Savage, Ashwin Nayak, Robert Gallo, Ekanath Rangan, Jonathan H. Chen
2023 J jnl
MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records.
CoRR
Scott L. Fleming, Alejandro Lozano, William J. Haberkorn, Jenelle A. Jindal, Eduardo Pontes Reis, Rahul Thapa, Louis Blankemeier, Julian Z. Genkins, Ethan Steinberg, Ashwin Nayak, Birju S. Patel, Chia-Chun Chiang, Alison Callahan, Zepeng Huo, Sergios Gatidis, Scott J. Adams, Oluseyi Fayanju, Shreya J. Shah, Thomas Savage, Ethan Goh, Akshay S. Chaudhari, Nima Aghaeepour, Christopher D. Sharp, Michael A. Pfeffer, Percy Liang, Jonathan H. Chen, Keith E. Morse, Emma P. Brunskill, Jason A. Fries, Nigam H. Shah
2023 J jnl
Methods to Estimate Large Language Model Confidence.
CoRR
Maia Kotelanski, Robert Gallo, Ashwin Nayak, Thomas Savage
2015 — conf
Automatic assessment of developmental dysplasia of the hip.
ISBI
Niamul Quader, Antony J. Hodgson, Kishore Mulpuri, Thomas Savage, Rafeef Abugharbieh