Thomas Manke

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
pyGenomeTracks: reproducible plots for multivariate genomic datasets.
Bioinform.
Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke
2020 J jnl
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization.
Nucleic Acids Res.
Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning
2019 J jnl
Parkour LIMS: high-quality sample preparation in next generation sequencing.
Bioinform.
Evgeny Anatskiy, Devon Patrick Ryan, Björn A. Grüning, Laura Arrigoni, Thomas Manke, Ulrike Bönisch
2019 J jnl
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.
Bioinform.
Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke
2018 J jnl
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization.
Nucleic Acids Res.
Joachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning
2017 J jnl
DHX9 suppresses RNA processing defects originating from the
Nat.
Tugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar
2016 J jnl
deepTools2: a next generation web server for deep-sequencing data analysis.
Nucleic Acids Res.
Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke
2014 J jnl
deepTools: a flexible platform for exploring deep-sequencing data.
Nucleic Acids Res.
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, Thomas Manke
2013 J jnl
ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.
Bioinform.
Maxim Barenboim, Thomas Manke
2009 J jnl
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Bioinform.
Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas
2008 J jnl
Prioritization of gene regulatory interactions from large-scale modules in yeast.
BMC Bioinform.
Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron
2008 J jnl
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions.
PLoS Comput. Biol.
Thomas Manke, Helge G. Roider, Martin Vingron
2007 J jnl
Predicting transcription factor affinities to DNA from a biophysical model.
Bioinform.
Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron
2004 — conf
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.
Regulatory Genomics
Thomas Manke, Christoph Dieterich, Martin Vingron