Thomas Mailund

48 papers A* 1A 2B 3C 4Journal 30Unranked 7
YearRankTypeTitle / Venue / Authors
2018 J jnl
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.
BMC Bioinform.
Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak
2017 — book
Advanced Object-Oriented Programming in R - Statistical Programming for Data Science, Analysis and Finance
Thomas Mailund
2017 J jnl
Fast admixture analysis and population tree estimation for SNP and NGS data.
Bioinform.
Jade Yu Cheng, Thomas Mailund, Rasmus Nielsen
2017 J jnl
Sequencing and
Nat.
Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup
2017 J jnl
admixturegraph: an R package for admixture graph manipulation and fitting.
Bioinform.
Kalle Leppälä, Svend V. Nielsen, Thomas Mailund
2016 J jnl
A genomic history of Aboriginal Australia.
Nat.
Anna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller, Vitor C. Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Yu Cheng, Jacob E. Crawford, Tim H. Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L. Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn Sand Korneliussen, Ivan P. Levkivskyi, José Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A. Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F. Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A. Matisoo-Smith, Peter J. McAllister, Alexander J. Mentzer, Mait Metspalu, Andrea B. Migliano, Les Murgha, Maude E. Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G. Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J. Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H. Schierup, Robert A. Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D. Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S. Sandhu, Laurent Excoffier, David M. Lambert, Eske Willerslev
2016 J jnl
Measurement Units in R.
R J.
Edzer J. Pebesma, Thomas Mailund, James Hiebert
2015 J jnl
Ancestral population genomics using coalescence hidden Markov models and heuristic optimisation algorithms.
Comput. Biol. Chem.
Jade Yu Cheng, Thomas Mailund
2014 J jnl
Identifying disease associated genes by network propagation.
BMC Syst. Biol.
Yu Qian, Søren Besenbacher, Thomas Mailund, Mikkel Heide Schierup
2014 J jnl
tqDist: a library for computing the quartet and triplet distances between binary or general trees.
Bioinform.
Andreas Sand, Morten Kragelund Holt, Jens Johansen, Gerth Stølting Brodal, Thomas Mailund, Christian N. S. Pedersen
2013 J jnl
A practical O(n log
BMC Bioinform.
Andreas Sand, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Thomas Mailund
2013 A* conf
Efficient algorithms for computing the triplet and quartet distance between trees of arbitrary degree.
SODA
Gerth Stølting Brodal, Rolf Fagerberg, Thomas Mailund, Christian N. S. Pedersen, Andreas Sand
2013 J jnl
zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm.
BMC Bioinform.
Andreas Sand, Martin Kristiansen, Christian N. S. Pedersen, Thomas Mailund
2012 J jnl
The sweep-line state space exploration method.
Theor. Comput. Sci.
Kurt Jensen, Lars Michael Kristensen, Thomas Mailund
2012 B conf
Using Colored Petri Nets to Construct Coalescent Hidden Markov Models: Automatic Translation from Demographic Specifications to Efficient Inference Methods.
Petri Nets
Thomas Mailund, Anders E. Halager, Michael Westergaard
2011 J jnl
A sub-cubic time algorithm for computing the quartet distance between two general trees.
Algorithms Mol. Biol.
Jesper Buus Nielsen, Anders K. Kristensen, Thomas Mailund, Christian N. S. Pedersen
2010 — conf
Building Very Large Neighbour-joining Trees.
BIOINFORMATICS
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2010 — conf
Inference of Large Phylogenies Using Neighbour-Joining.
BIOSTEC (Selected Papers)
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2009 — conf
A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees.
IJCBS
Thomas Mailund, Jesper Buus Nielsen, Christian N. S. Pedersen
2009 J jnl
A fast algorithm for genome-wide haplotype pattern mining.
BMC Bioinform.
Søren Besenbacher, Christian N. S. Pedersen, Thomas Mailund
2008 J jnl
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.
J. Bioinform. Comput. Biol.
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
2008 J jnl
Efficient whole-genome association mapping using local phylogenies for unphased genotype data.
Bioinform.
Zhihong Ding, Thomas Mailund, Yun S. Song
2008 J jnl
Investigating selection on viruses: a statistical alignment approach.
BMC Bioinform.
Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein
2008 C conf
Rapid Neighbour-Joining.
WABI
Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen
2008 J jnl
SNPFile - A software library and file format for large scale association mapping and population genetics studies.
BMC Bioinform.
Jesper Buus Nielsen, Thomas Mailund
2007 J jnl
Annotation of selection strengths in viral genomes.
Bioinform.
Stephen McCauley, Saskia de Groot, Thomas Mailund, Jotun Hein
2007 J jnl
Comparative annotation of viral genomes with non-conserved gene structure.
Bioinform.
Saskia de Groot, Thomas Mailund, Jotun Hein
2007 B conf
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.
APBC
Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg
2007 B conf
Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree.
APBC
Martin Stig Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg
2007 J jnl
Experiences with GeneRecon on MiG.
Future Gener. Comput. Syst.
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
2006 J jnl
Fast calculation of the quartet distance between trees of arbitrary degrees.
Algorithms Mol. Biol.
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers, Martin Stig Stissing
2006 J jnl
GeneRecon - a coalescent based tool for fine-scale association mapping.
Bioinform.
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser
2006 J jnl
Recrafting the neighbor-joining method.
BMC Bioinform.
Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Derek Phillips
2006 J jnl
Whole genome association mapping by incompatibilities and local perfect phylogenies.
BMC Bioinform.
Thomas Mailund, Søren Besenbacher, Mikkel H. Schierup
2005 J jnl
CoaSim: A flexible environment for simulating genetic data under coalescent models.
BMC Bioinform.
Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Peter J. M. Mechlenborg, Jesper N. Madsen, Leif Schauser
2005 C conf
Computing the Quartet Distance Between Trees of Arbitrary Degree.
WABI
Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers
2005 — conf
Initial Experiences with GeneRecon on MiG.
GCA
Thomas Mailund, Christian N. S. Pedersen, Jonas Bardino, Brian Vinter, Henrik Hoey Karlsen
2005 J jnl
RBT - a tool for building refined Buneman trees.
Bioinform.
Søren Besenbacher, Thomas Mailund, Lasse Westh-Nielsen, Christian N. S. Pedersen
2004 J jnl
Exploiting equivalence reduction and the sweep-line method for detecting terminal states.
IEEE Trans. Syst. Man Cybern. Part A
Jonathan Billington, Guy Edward Gallasch, Lars Michael Kristensen, Thomas Mailund
2004 A conf
Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method.
TACAS
Thomas Mailund, Michael Westergaard
2004 J jnl
QDist-quartet distance between evolutionary trees.
Bioinform.
Thomas Mailund, Christian N. S. Pedersen
2004 J jnl
QuickJoin - fast neighbour-joining tree reconstruction.
Bioinform.
Thomas Mailund, Christian N. S. Pedersen
2003 C conf
Efficient Path Finding with the Sweep-Line Method Using External Storage.
ICFEM
Lars Michael Kristensen, Thomas Mailund
2002 C conf
A Compositional Sweep-Line State Space Exploration Method.
FORTE
Lars Michael Kristensen, Thomas Mailund
2002 — conf
A Generalised Sweep-Line Method for Safety Properties.
FME
Lars Michael Kristensen, Thomas Mailund
2002 — conf
Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method.
ICATPN
Thomas Mailund
2001 A conf
A Sweep-Line Method for State Space Exploration.
TACAS
Søren Christensen, Lars Michael Kristensen, Thomas Mailund
2001 — conf
Condensed State Spaces for Timed Petri Nets.
ICATPN
Søren Christensen, Lars Michael Kristensen, Thomas Mailund