Thomas M. Bartol

16 papers A 1C 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface.
PLoS Comput. Biol.
Adam Husár, Mariam Ordyan, Guadalupe C. Garcia, Joel G. Yancey, Ali Sinan Saglam, James R. Faeder, Thomas M. Bartol, Mary B. Kennedy, Terrence J. Sejnowski
2024 J jnl
Synaptic Information Storage Capacity Measured With Information Theory.
Neural Comput.
Mohammad Samavat, Thomas M. Bartol, Kristen M. Harris, Terrence J. Sejnowski
2022 J jnl
Multiscale modeling of presynaptic dynamics from molecular to mesoscale.
PLoS Comput. Biol.
Jonathan W. Garcia, Thomas M. Bartol, Terrence J. Sejnowski
2019 J jnl
A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation.
PLoS Comput. Biol.
Matthew C. Pharris, Neal M. Patel, Tyler G. VanDyk, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy, Melanie I. Stefan, Tamara Kinzer-Ursem
2014 — ch.
MCell.
Encyclopedia of Computational Neuroscience
Thomas M. Bartol, Markus Dittrich, James R. Faeder
2014 J jnl
Multi-state Modeling of Biomolecules.
PLoS Comput. Biol.
Melanie I. Stefan, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy
2014 J jnl
VolRoverN: Enhancing Surface and Volumetric Reconstruction for Realistic Dynamical Simulation of Cellular and Subcellular Function.
Neuroinformatics
John Edwards, Eric Daniel, Justin Kinney, Thomas M. Bartol, Terrence J. Sejnowski, Daniel Johnston, Kristen M. Harris, Chandrajit L. Bajaj
2010 J jnl
Modelling Vesicular Release at Hippocampal Synapses.
PLoS Comput. Biol.
Suhita Nadkarni, Thomas M. Bartol, Terrence J. Sejnowski, Herbert Levine
2008 J jnl
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces.
SIAM J. Sci. Comput.
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Markus Dittrich, Jen-Chien Jack Chang, Scott B. Baden, Terrence J. Sejnowski, Joel R. Stiles
2007 C conf
Toward Petascale Simulation of Cellular Microphysiology.
BIBE
Scott B. Baden, Terrence J. Sejnowski, Thomas M. Bartol, Joel R. Stiles
2005 J jnl
Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.
Neuroinformatics
Gina E. Sosinsky, Thomas J. Deerinck, Rocco Greco, Casey H. Buitenhuys, Thomas M. Bartol, Mark H. Ellisman
2004 A conf
A Large Scale Monte Carlo Simulator for Cellular Microphysiology.
IPDPS
Gregory T. Balls, Scott B. Baden, Tilman Kispersky, Thomas M. Bartol, Terrence J. Sejnowski
2004 J jnl
The Virtual Instrument: Support for Grid-Enabled Mcell Simulations.
Int. J. High Perform. Comput. Appl.
Henri Casanova, Francine Berman, Thomas M. Bartol, Erhan Gokcay, Terrence J. Sejnowski, Adam Birnbaum, Jack J. Dongarra, Michelle Miller, Mark H. Ellisman, Marcio Faerman, Graziano Obertelli, Richard Wolski, Stuart M. Pomerantz, Joel R. Stiles
2003 — conf
Spatially Realistic Computational Physiology: Past, Present and Future.
PARCO
Joel R. Stiles, W. C. Ford, J. M. Pattillo, Thomas E. Deerinck, Mark H. Ellisman, Thomas M. Bartol, Terrence J. Sejnowski
2001 J jnl
An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines.
Neurocomputing
Kevin M. Franks, Thomas M. Bartol, Terrence J. Sejnowski
2001 J jnl
Distributing MCell Simulations on the Grid.
Int. J. High Perform. Comput. Appl.
Henri Casanova, Thomas M. Bartol, Joel R. Stiles, Francine Berman