Thomas Lengauer

212 papers A* 9A 19B 10C 4Misc 2Journal 126Unranked 36

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. Bioinform. Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer
2023	J	`jnl`	Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. CoRR Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer
2018	J	`jnl`	geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res. Matthias Döring, Joachim Büch, Georg Friedrich, Alejandro Pironti, Prabhav Kalaghatgi, Elena Knops, Eva Heger, Martin Obermeier, Martin Däumer, Alexander Thielen, Rolf Kaiser, Thomas Lengauer, Nico Pfeifer
2017	J	`jnl`	Computing phylogenetic trees using topologically related minimum spanning trees. J. Graph Algorithms Appl. Prabhav Kalaghatgi, Thomas Lengauer
2017	J	`jnl`	DeepBlueR: large-scale epigenomic analysis in R. Bioinform. Felipe Albrecht, Markus List, Christoph Bock, Thomas Lengauer
2017	J	`jnl`	ISCB's initial reaction to New England Journal of Medicine editorial on data sharing. Bioinform. Bonnie Berger, Terry Gaasterland, Thomas Lengauer, Christine A. Orengo, Bruno Gaëta, Scott Markel, Alfonso Valencia
2017	J	`jnl`	Selecting optimal minimum spanning trees that share a topological correspondence with phylogenetic trees. CoRR Prabhav Kalaghatgi, Thomas Lengauer
2016	J	`jnl`	DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. Nucleic Acids Res. Felipe Albrecht, Markus List, Christoph Bock, Thomas Lengauer
2016	J	`jnl`	ISCB's Initial Reaction to PLoS Comput. Biol. Bonnie Berger, Terry Gaasterland, Thomas Lengauer, Christine A. Orengo, Bruno Gaëta, Scott Markel, Alfonso Valencia
2015	J	`jnl`	A general concept for consistent documentation of computational analyses. Database J. Biol. Databases Curation Peter Ebert, Fabian Müller, Karl Nordström, Thomas Lengauer, Marcel H. Schulz
2015	J	`jnl`	How to Write a Presubmission Inquiry. PLoS Comput. Biol. Thomas Lengauer, Ruth Nussinov
2015	J	`jnl`	ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2015	J	`jnl`	Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
2014	J	`jnl`	BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. Nucleic Acids Res. Daniel Becker, Pavlo Lutsik, Peter Ebert, Christoph Bock, Thomas Lengauer, Jörn Walter
2014	J	`jnl`	Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
2014	J	`jnl`	Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
2014	J	`jnl`	Entropy gain due to water release upon ligand binding. J. Cheminformatics Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer
2013	J	`jnl`	A method for finding consensus breakpoints in the cancer genome from copy number data. Bioinform. Laura Tolosi, Jessica Theißen, Konstantin Halachev, Barbara Hero, Frank Berthold, Thomas Lengauer
2013	J	`jnl`	Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage. PLoS Comput. Biol. Katarzyna Bozek, Thomas Lengauer, Saleta Sierra, Rolf Kaiser, Francisco S. Domingues
2013	J	`jnl`	New Methods Section in PLoS Comput. Biol. Thomas Lengauer, Ruth Nussinov
2013	J	`jnl`	Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes. PLoS Comput. Biol. Sven-Eric Schelhorn, Matthias Fischer, Laura Tolosi, Janine Altmüller, Peter Nürnberg, Herbert Pfister, Thomas Lengauer, Frank Berthold
2012	A	`conf`	History-alignment models for bias-aware prediction of virological response to HIV combination therapy. AISTATS Jasmina Bogojeska, Daniel Stöckel, Maurizio Zazzi, Rolf Kaiser, Francesca Incardona, Michal Rosen-Zvi, Thomas Lengauer
2012	J	`jnl`	Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data. Bioinform. Nico Pfeifer, Thomas Lengauer
2012	J	`jnl`	On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
2012	J	`jnl`	Paving the future: finding suitable ISMB venues. Bioinform. Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso
2011	J	`jnl`	BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, Jörn Walter, Christoph Bock
2011	J	`jnl`	Classification with correlated features: unreliability of feature ranking and solutions. Bioinform. Laura Tolosi, Thomas Lengauer
2011	J	`jnl`	Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis. BMC Medical Informatics Decis. Mak. Martin Däumer, Rolf Kaiser, Rolf Klein, Thomas Lengauer, Bernhard Thiele, Alexander Thielen
2010	J	`jnl`	AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res. Dorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, Mario Albrecht
2010	J	`jnl`	Chasing the AIDS virus. Commun. ACM Thomas Lengauer, André Altmann, Alexander Thielen, Rolf Kaiser
2010	J	`jnl`	Dealing with sparse data in predicting outcomes of HIV combination therapies. Bioinform. Jasmina Bogojeska, Steffen Bickel, André Altmann, Thomas Lengauer
2010	J	`jnl`	Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. Bioinform. Andreas Schlicker, Thomas Lengauer, Mario Albrecht
2010	J	`jnl`	Permutation importance: a corrected feature importance measure. Bioinform. André Altmann, Laura Tolosi, Oliver Sander, Thomas Lengauer
2010	J	`jnl`	Predicting MHC class I epitopes in large datasets. BMC Bioinform. Kirsten Roomp, Iris Antes, Thomas Lengauer
2009	J	`jnl`	Bioinformatische Unterstützung der Auswahl von HIV-Therapien. Inform. Spektrum Thomas Lengauer, André Altmann, Alexander Thielen
2009	J	`jnl`	DASMI: exchanging, annotating and assessing molecular interaction data. Bioinform. Hagen Blankenburg, Robert D. Finn, Andreas Prlic, Andrew M. Jenkinson, Fidel Ramírez, Dorothea Emig, Sven-Eric Schelhorn, Joachim Büch, Thomas Lengauer, Mario Albrecht
2009	—	`conf`	Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance. GCB Juliane Perner, André Altmann, Thomas Lengauer
2008	C	`conf`	An integrative approach for predicting interactions of protein regions. ECCB Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
2008	—	`conf`	Applications of semantic similarity measures. Ontologies and Text Mining for Life Sciences Andreas Schlicker, Fidel Ramírez, Jörg Rahnenführer, Carola Huthmacher, Alejandro Pironti, Francisco S. Domingues, Thomas Lengauer, Mario Albrecht
2008	J	`jnl`	Computational epigenetics. Bioinform. Christoph Bock, Thomas Lengauer
2008	J	`jnl`	Computing topological parameters of biological networks. Bioinform. Yassen Assenov, Fidel Ramírez, Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
2008	J	`jnl`	Integrating expression data with domain interaction networks. Bioinform. Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht
2008	J	`jnl`	Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. J. Integr. Bioinform. Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel, Thomas Lengauer, Mario Albrecht
2008	J	`jnl`	Local Function Conservation in Sequence and Structure Space. PLoS Comput. Biol. Nils Weinhold, Oliver Sander, Francisco S. Domingues, Thomas Lengauer, Ingolf Sommer
2008	A*	`conf`	Multi-task learning for HIV therapy screening. ICML Steffen Bickel, Jasmina Bogojeska, Thomas Lengauer, Tobias Scheffer
2008	J	`jnl`	Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
2008	A	`conf`	Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB Michal Rosen-Zvi, André Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer
2008	J	`jnl`	Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. Jasmina Bogojeska, Thomas Lengauer, Jörg Rahnenführer
2008	B	`conf`	Structural Descriptors of Protein-Protein Binding Sites. APBC Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer
2007	J	`jnl`	Conformational analysis of alternative protein structures. Bioinform. Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
2007	J	`jnl`	CpG Island Mapping by Epigenome Prediction. PLoS Comput. Biol. Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer
2007	J	`jnl`	Functional evaluation of domain-domain interactions and human protein interaction networks. Bioinform. Andreas Schlicker, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht
2007	J	`jnl`	ISMB/ECCB 2007: The Premier Conference on Computational Biology. PLoS Comput. Biol. Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost
2007	J	`jnl`	Moment invariants as shape recognition technique for comparing protein binding sites. Bioinform. Ingolf Sommer, Oliver Müller, Francisco S. Domingues, Oliver Sander, Joachim Weickert, Thomas Lengauer
2007	J	`jnl`	Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. PLoS Comput. Biol. Oliver Sander, Tobias Sing, Ingolf Sommer, Andrew J. Low, Peter K. Cheung, P. Richard Harrigan, Thomas Lengauer, Francisco S. Domingues
2006	J	`jnl`	A Fully Computational Model for Predicting Percutaneous Drug Absorption. J. Chem. Inf. Model. Dirk Neumann, Oliver Kohlbacher, Christian Merkwirth, Thomas Lengauer
2006	J	`jnl`	A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinform. Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
2006	—	`conf`	Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig
2006	J	`jnl`	Computational recognition of potassium channel sequences. Bioinform. Burkhard Heil, Jost Ludwig, Hella Lichtenberg-Fraté, Thomas Lengauer
2006	—	`conf`	DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. ISMB (Supplement of Bioinformatics) Iris Antes, Shirley W. I. Siu, Thomas Lengauer
2006	J	`jnl`	Editorial. Bioinform. Andrew Ernest Torda, Thomas Lengauer
2006	J	`jnl`	Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm. J. Chem. Inf. Model. Andreas Steffen, Andreas Kämper, Thomas Lengauer
2006	J	`jnl`	Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies. J. Chem. Inf. Model. Andreas Kämper, Joannis Apostolakis, Matthias Rarey, Christel M. Marian, Thomas Lengauer
2006	—	`conf`	Functional Evaluation of Domain-Domain Interactions and Human Protein Interaction Networks. German Conference on Bioinformatics Andreas Schlicker, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht
2006	J	`jnl`	Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinform. Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
2006	J	`jnl`	Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinform. Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto
2006	J	`jnl`	Local protein structure prediction using discriminative models. BMC Bioinform. Oliver Sander, Ingolf Sommer, Thomas Lengauer
2006	J	`jnl`	NOXclass: prediction of protein-protein interaction types. BMC Bioinform. Hongbo Zhu, Francisco S. Domingues, Ingolf Sommer, Thomas Lengauer
2006	J	`jnl`	Recco: recombination analysis using cost optimization. Bioinform. Jochen Maydt, Thomas Lengauer
2005	J	`jnl`	Automatic Generation of Complementary Descriptors with Molecular Graph Networks. J. Chem. Inf. Model. Christian Merkwirth, Thomas Lengauer
2005	J	`jnl`	BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinform. Christoph Bock, Sabine Reither, Thomas Mikeska, Martina Paulsen, Jörn Walter, Thomas Lengauer
2005	—	`conf`	Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer
2005	J	`jnl`	Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
2005	J	`jnl`	Confirmation of human protein interaction data by human expression data. BMC Bioinform. Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
2005	—	`conf`	Decomposing protein networks into domain-domain interactions. ECCB/JBI Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, Thomas Lengauer
2005	J	`jnl`	Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinform. Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
2005	J	`jnl`	Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2005	J	`jnl`	Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
2005	J	`jnl`	POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions. J. Chem. Inf. Model. Iris Antes, Christian Merkwirth, Thomas Lengauer
2005	J	`jnl`	ROCR: visualizing classifier performance in R. Bioinform. Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
2005	—	`conf`	Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. LWA Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno
2005	J	`jnl`	The DFG Priority Program "Informatics Methods for the Analysis and Interpretation of Large Genomic Datasets". it Inf. Technol. Thomas Lengauer
2004	J	`jnl`	Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. Bioinform. Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer, Thomas Lengauer
2004	J	`jnl`	Ensemble Methods for Classification in Cheminformatics. J. Chem. Inf. Model. Christian Merkwirth, Harald Mauser, Tanja Schulz-Gasch, Olivier Roche, Martin Stahl, Thomas Lengauer
2004	—	`conf`	Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. ROCAI Tobias Sing, Niko Beerenwinkel, Thomas Lengauer
2004	B	`conf`	Learning multiple evolutionary pathways from cross-sectional data. RECOMB Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
2004	J	`jnl`	Predicting protein structure classes from function predictions. Bioinform. Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, Ulrik de Lichtenberg, Thomas Lengauer
2004	J	`jnl`	The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
2003	C	`conf`	Analyzing resistance phenomena in HIV with bioinformatics methods. ECCB Thomas Lengauer
2003	J	`jnl`	Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. Bioinform. Mario Albrecht, Thomas Lengauer, Stefan Schreiber
2003	J	`jnl`	Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter
2003	—	`conf`	Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig
2003	J	`jnl`	Microarrays: How Many Do You Need? J. Comput. Biol. Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
2003	J	`jnl`	Parallel 'go with the winners' algorithms in distributed memory models. J. Parallel Distributed Comput. Marcus Peinado, Thomas Lengauer
2003	J	`jnl`	Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family. Bioinform. Mario Albrecht, Thomas Lengauer
2002	J	`jnl`	A hypergraph-based method for unification of existing protein structure- and sequence-families. Silico Biol. Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer
2002	A	`conf`	Co-clustering of biological networks and gene expression data. ISMB Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer
2002	J	`jnl`	Confidence measures for protein fold recognition. Bioinform. Ingolf Sommer, Alexander Zien, Niklas von Öhsen, Ralf Zimmer, Thomas Lengauer
2002	J	`jnl`	Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
2002	C	`conf`	ECCB 2002 Organization. ECCB Thomas Lengauer
2002	C	`conf`	Editorial. ECCB Thomas Lengauer
2002	J	`jnl`	Flexible docking under pharmacophore type constraints. J. Comput. Aided Mol. Des. Sally A. Hindle, Matthias Rarey, Christian Buning, Thomas Lengauer
2002	J	`jnl`	Improving fold recognition of protein threading by experimental distance constraints. Silico Biol. Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
2002	B	`conf`	Microarrays: how many do you need? RECOMB Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
2002	J	`jnl`	Preface: Special RECOMB 2001 Issue. J. Comput. Biol. Thomas Lengauer
2002	J	`jnl`	ProML - the Protein Markup Language for specification of protein sequences, structures and families. Silico Biol. Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
2001	—	`conf`	A new Method for Unification of Existing Protein Structure- and Sequence-Families. German Conference on Bioinformatics Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer
2001	—	`conf`	Centralization: a new method for the normalization of gene expression data. ISMB (Supplement of Bioinformatics) Alexander Zien, Thomas Aigner, Ralf Zimmer, Thomas Lengauer
2001	Misc	`conf`	Computational Biology at the Beginning of the Post-genomic Era. Informatics Thomas Lengauer
2001	—	`conf`	Confidence Measures for Fold Recognition. German Conference on Bioinformatics Ingolf Sommer, Niklas von Öhsen, Alexander Zien, Ralf Zimmer, Thomas Lengauer
2001	J	`jnl`	Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intell. Syst. Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
2001	—	`conf`	Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
2001	—	`conf`	Improving Fold Recognition of Protein Threading by Experimental Distance Constraints. German Conference on Bioinformatics Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
2001	—	`conf`	ProML - the Protein Markup Language for specification of protein sequences, structures and families. German Conference on Bioinformatics Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
2001	B	`ed.`	Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001 RECOMB Thomas Lengauer
2000	J	`jnl`	A Simple Iterative Approach to Parameter Optimization. J. Comput. Biol. Alexander Zien, Ralf Zimmer, Thomas Lengauer
2000	B	`conf`	A simple iterative approach to parameter optimization. RECOMB Alexander Zien, Ralf Zimmer, Thomas Lengauer
2000	A	`conf`	Analysis of Gene Expression Data with Pathway Scores. ISMB Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer
2000	—	`conf`	Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs. German Conference on Bioinformatics Thomas Lengauer
2000	A	`conf`	Computational Biology - Algorithms and More. ESA Thomas Lengauer
2000	J	`jnl`	Computational methods for the structural alignment of molecules. J. Comput. Aided Mol. Des. Christian Lemmen, Thomas Lengauer
2000	J	`jnl`	Engineering support vector machine kernels that recognize translation initiation sites. Bioinform. Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Thomas Lengauer, Klaus-Robert Müller
2000	J	`jnl`	Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinform. Robert Küffner, Ralf Zimmer, Thomas Lengauer
2000	A	`ed.`	Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA ISMB Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig
2000	J	`jnl`	Protein Structure Prediction Methods for Drug Design. Briefings Bioinform. Thomas Lengauer, Ralf Zimmer
2000	J	`jnl`	Provably Good Global Routing of Integrated Circuits. SIAM J. Optim. Thomas Lengauer, Martin Lügering
1999	Misc	`conf`	Application of Parameter Optimization to Molecular Comparison Problems. Pacific Symposium on Biocomputing Christian Lemmen, Alexander Zien, Ralf Zimmer, Thomas Lengauer
1999	J	`jnl`	Decision tree-based formation of consensus protein secondary structure prediction. Bioinform. Joachim Selbig, Heinz-Theodor Mevissen, Thomas Lengauer
1999	J	`jnl`	Docking of hydrophobic ligands with interaction-based matching algorithms. Bioinform. Matthias Rarey, Bernd Kramer, Thomas Lengauer
1999	J	`jnl`	Editorial. The Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99). Bioinform. Thomas Lengauer
1999	—	`conf`	Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites. German Conference on Bioinformatics Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alexander J. Smola, Thomas Lengauer, Klaus-Robert Müller
1999	B	`conf`	Invited Lecture: Discrete Optimization Methods for Packing Problems in Two and Three Dimensions - With Applications in the Textile and Car Manufacturing Industries. WG Thomas Lengauer
1999	—	`conf`	Pathway analysis in metabolic databases via differetial metabolic display (DMD). German Conference on Bioinformatics Robert Küffner, Ralf Zimmer, Thomas Lengauer
1999	A	`ed.`	Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany ISMB Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer
1998	J	`jnl`	Computing closely matching upper and lower bounds on textile nesting problems. Eur. J. Oper. Res. Ralf Heckmann, Thomas Lengauer
1998	—	`conf`	Docking of hydrophobic ligands with interaction-based matching algorithms. German Conference on Bioinformatics Matthias Rarey, Bernd Kramer, Thomas Lengauer
1998	A*	`conf`	Random Generation of Embedded Graphs and an Extension to Dobrushin Uniqueness (Extended Abstract). STOC Marcus Peinado, Thomas Lengauer
1998	J	`jnl`	RigFit: A new approach to superimposing ligand molecules. J. Comput. Aided Mol. Des. Christian Lemmen, Claus Hiller, Thomas Lengauer
1997	—	`conf`	'Go with the winners' Generators with Applications to Molecular Modeling. RANDOM Marcus Peinado, Thomas Lengauer
1997	—	`conf`	Algorithmen zum automatischen Zeichnen von Graphen im Rahmen des DFG-Schwerpunkts Effiziente Algorithmen für diskrete Probleme und ihre Anwendungen. GI Jahrestagung Franz-Josef Brandenburg, Michael Jünger, Petra Mutzel, Thomas Lengauer
1997	—	`ed.`	Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany, September 30 - October 2, 1996, Selected Papers German Conference on Bioinformatics - Selected Papers Ralf Hofestädt, Thomas Lengauer, Markus Löffler, Dietmar Schomburg
1997	—	`conf`	DFG-Schwerpunkt: Informatikmethoden zur Analyse und Interpretation großer genomischer Datenmengen. GI Jahrestagung Thomas Lengauer
1997	A	`conf`	Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. ISMB Ina Koch, Thomas Lengauer
1997	B	`conf`	Fast and numerically stable parametric alignment of biosequences. RECOMB Ralf Zimmer, Thomas Lengauer
1997	J	`jnl`	Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention. J. Comput. Aided Mol. Des. Matthias Rarey, Bernd Kramer, Thomas Lengauer
1997	—	`conf`	Parallel 'Go with the Winners' Algorithms in the LogP Model. IPPS Marcus Peinado, Thomas Lengauer
1997	—	`conf`	RigFit: a new approach to superimposing ligand molecules. German Conference on Bioinformatics Christian Lemmen, Claus Hiller, Thomas Lengauer
1997	J	`jnl`	Time-efficient flexible superposition of medium-sized molecules. J. Comput. Aided Mol. Des. Christian Lemmen, Thomas Lengauer
1996	J	`jnl`	An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. J. Comput. Biol. Ina Koch, Thomas Lengauer, Egon Wanke
1996	A	`conf`	Computing Upper and Lower Bounds on Textile Nesting Problems. ESA Ralf Heckmann, Thomas Lengauer
1996	J	`jnl`	Editorial: Informatik in den Biowissenschaften. Informationstechnik Tech. Inform. Ralf Hofestädt, Markus Löffler, Thomas Lengauer
1996	J	`jnl`	Placement of medium-sized molecular fragments into active sites of proteins. J. Comput. Aided Mol. Des. Matthias Rarey, Stephan Wefing, Thomas Lengauer
1996	—	`conf`	Time-Efficient Flexible Superposition of Medium-Sized Molecules and Molecular Fragments. German Conference on Bioinformatics Christian Lemmen, Thomas Lengauer
1995	J	`jnl`	A simulated annealing approach to the nesting problem in the textile manufacturing industry. Ann. Oper. Res. Ralf Heckmann, Thomas Lengauer
1995	A	`conf`	APPlaUSE: Area and performance optimization in a unified placement and synthesis environment. ICCAD Elof Frank, Thomas Lengauer
1995	—	`conf`	EMC-driven midway routing on PCBs. ED&TC H. Schmidt, Dirk Theune, Ralf Thiele, Thomas Lengauer
1995	A	`ed.`	Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 ISMB Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak
1995	A	`conf`	Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. ISMB Ralf Thiele, Ralf Zimmer, Thomas Lengauer
1995	J	`jnl`	The nesting problem in the leather manufacturing industry. Ann. Oper. Res. Jörg Heistermann, Thomas Lengauer
1995	A	`conf`	Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. ISMB Matthias Rarey, Bernd Kramer, Thomas Lengauer
1994	J	`jnl`	Robust methods for EMC-driven routing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Dirk Theune, Ralf Thiele, Werner John, Thomas Lengauer
1993	J	`jnl`	1. Fachtagung "Informatik in den Biowissenschaften". Künstliche Intell. Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
1993	—	`conf`	Algorithmic Research Problems in Molecular Bioinformatics. ISTCS Thomas Lengauer
1993	A	`ed.`	Algorithms - ESA '93, First Annual European Symposium, Bad Honnef, Germany, September 30 - October 2, 1993, Proceedings ESA Thomas Lengauer
1993	A*	`conf`	Efficient Automatic Part Nesting on Irregular and Inhomogeneous Surfaces. SODA Jörg Heistermann, Thomas Lengauer
1993	J	`jnl`	Efficient Decision Procedures for Graph Properties on Centext-Free Graph Languages. J. ACM Thomas Lengauer, Egon Wanke
1993	—	`ed.`	Informatik in den Biowissenschaften, 1. Fachtagung der GI-FG 4.0.3 "Informatik in den Biowissenschaften", Bonn, 15./16. Februar 1993, Proceedings Informatik in den Biowissenschaften Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
1993	—	`conf`	Informatik in den Naturwissenschaften. Perspektiven der Informatik Thomas Lengauer
1993	—	`conf`	Informatik in den technischen Disziplinen. Perspektiven der Informatik Thomas Lengauer
1993	—	`ch.`	Integer Program formulations of Global Routing and Placement Problems. Algorithmic Aspects of VLSI Layout Thomas Lengauer, Martin Lügering
1993	J	`jnl`	Robust and accurate hierarchical floorplanning with integrated global wiring. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Thomas Lengauer, Rolf Müller
1992	A	`conf`	HERO: hierarchical EMC-constrained routing. ICCAD Dirk Theune, Ralf Thiele, Thomas Lengauer, Anja Feldmann
1992	—	`conf`	Processing of Hierarchically Defined Graphs and Graph Families. Data Structures and Efficient Algorithms Franz Höfting, Thomas Lengauer, Egon Wanke
1992	J	`jnl`	The Correlation between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. J. Comput. Syst. Sci. Thomas Lengauer, Klaus W. Wagner
1991	A*	`conf`	Efficient Algorithms for Path Problems with Gernal Cost Citeria. ICALP Thomas Lengauer, Dirk Theune
1991	—	`conf`	Synthesis of multi-level logic with one symbolic input. EURO-DAC Frank Buijs, Thomas Lengauer
1991	J	`jnl`	The efficient solution of integer programs for hierarchical global routing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Jörg Heistermann, Thomas Lengauer
1991	B	`conf`	Unstructured Path Problems and the Making of Semirings (Preliminary Version). WADS Thomas Lengauer, Dirk Theune
1990	A	`conf`	A Robust Framework for Hierarchical Floorplanning with Integrated Global Wiring. ICCAD Thomas Lengauer, Rolf Müller
1990	—	`book`	Combinatorial algorithms for integrated circuit layout. Thomas Lengauer
1990	A	`ed.`	STACS 90, 7th Annual Symposium on Theoretical Aspects of Computer Science, Rouen, France, February 22-24, 1990, Proceedings STACS Christian Choffrut, Thomas Lengauer
1990	J	`jnl`	The Binary Network Flow Problem is Logspace Complete for P. Theor. Comput. Sci. Thomas Lengauer, Klaus W. Wagner
1990	—	`ch.`	VLSI Theory. Handbook of Theoretical Computer Science, Volume A: Algorithms and Complexity (A) Thomas Lengauer
1989	J	`jnl`	Hierarchical planarity testing algorithms. J. ACM Thomas Lengauer
1988	A*	`conf`	Efficient Analysis of Graph Properties on Context-free Graph Languages (Extended Abstract). ICALP Thomas Lengauer, Egon Wanke
1988	J	`jnl`	Efficient Solution of Connectivity Problems on Hierarchically Defined Graphs. SIAM J. Comput. Thomas Lengauer, Egon Wanke
1988	J	`jnl`	Efficient processing of hierarchical graphs for engineering design. Bull. EATCS Thomas Lengauer, Egon Wanke
1988	J	`jnl`	Linear arrangement problems on recursively partitioned graphs. ZOR Methods Model. Oper. Res. Thomas Lengauer, Rolf Müller
1987	J	`jnl`	Algorithmic Aspects of One-Dimensional Layout Compaction. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. Jürgen Doenhardt, Thomas Lengauer
1987	J	`jnl`	Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. J. Algorithms Thomas Lengauer
1987	J	`jnl`	Efficient solutions of hierarchical systems of linear equations. Computing Thomas Lengauer, Christian Wieners
1987	A	`conf`	The Correlation Between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. STACS Thomas Lengauer, Klaus W. Wagner
1986	J	`jnl`	An analysis of ternary simulation as a tool for race detection in digital MOS circuits. Integr. Thomas Lengauer, Stefan Näher
1986	A	`conf`	Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. STACS Thomas Lengauer
1986	—	`conf`	Exploiting Hierarchy in VLSI Design. Aegean Workshop on Computing Thomas Lengauer
1986	A*	`conf`	Hierarchical Planary Testing Algorithms. ICALP Thomas Lengauer
1986	—	`conf`	Hierarchische Darstellung geometrischer Objekte und ihre algorithmische Bedeutung. GI Jahrestagung (1) Thomas Lengauer
1986	—	`conf`	Linear Algorithms For Two CMOS Layout Problems. Aegean Workshop on Computing Rolf Müller, Thomas Lengauer
1984	—	`conf`	Algorithmische Spezifikation von symbolischen Layouts integrierter Schaltkreise. GI Jahrestagung (Fachgespräche) Thomas Lengauer
1984	J	`jnl`	On the Solution of Inequality Systems Relevant to IC-Layout. J. Algorithms Thomas Lengauer
1983	B	`conf`	Efficient Algorithms for the Constraint Generation for Integrated Circuit Layout Compaction. WG Thomas Lengauer
1982	J	`jnl`	Asymptotically tight bounds on time-space trade-offs in a pebble game. J. ACM Thomas Lengauer, Robert Endre Tarjan
1982	J	`jnl`	Cube-Connected Cycles - Shuffle Exchange Graph - Das aktuelle Schlagwort. Inform. Spektrum Thomas Lengauer
1982	B	`conf`	On the Solution of Inequality Systems Relevant to IC-Layout. WG Thomas Lengauer
1982	A*	`conf`	The Complexity of Compacting Hierarchically Specified Layouts of Integrated Circuits (Preliminary Version) FOCS Thomas Lengauer
1981	J	`jnl`	Black-White Pebbles and Graph Separation. Acta Informatica Thomas Lengauer
1980	J	`jnl`	The Pebbling Problem is Complete in Polynomial Space. SIAM J. Comput. John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan
1980	J	`jnl`	The Space Complexity of Pebble Games on Trees. Inf. Process. Lett. Thomas Lengauer, Robert Endre Tarjan
1979	J	`jnl`	A Fast Algorithm for Finding Dominators in a Flowgraph. ACM Trans. Program. Lang. Syst. Thomas Lengauer, Robert Endre Tarjan
1979	A*	`conf`	The Pebbling Problem is Complete in Polynomial Space STOC John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan
1979	A*	`conf`	Upper and Lower Bounds on Time-Space Tradeoffs STOC Thomas Lengauer, Robert Endre Tarjan
1979	—	`—`	Upper and lower bounds on time-space tradeoffs in a pebble game. Thomas Lengauer