Thomas LaFramboise

17 papers Misc 2Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
A double Pólya-Gamma data augmentation scheme for a hierarchical Negative Binomial - Binomial data model.
Comput. Stat. Data Anal.
Xuan Ma, Jenný Brynjarsdóttir, Thomas LaFramboise
2022 J jnl
SYSMut: decoding the functional significance of rare somatic mutations in cancer.
Briefings Bioinform.
Sirvan Khalighi, Peronne Joseph, Deepak Babu, Salendra Singh, Thomas LaFramboise, Kishore Guda, Vinay Varadan
2019 J jnl
CytoConverter: a web-based tool to convert karyotypes to genomic coordinates.
BMC Bioinform.
Janet Wang, Thomas LaFramboise
2017 J jnl
Detection and quantification of mitochondrial DNA deletions from next-generation sequence data.
BMC Bioinform.
Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould, Thomas LaFramboise
2017 J jnl
Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree.
IEEE ACM Trans. Comput. Biol. Bioinform.
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
2017 J jnl
Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.
IEEE J. Biomed. Health Informatics
M. Khalid Khan Niazi, Keluo Yao, Debra L. Zynger, Steven K. Clinton, James Chen, Mehmet Koyutürk, Thomas LaFramboise, Metin N. Gurcan
2015 J jnl
Whole-exome sequencing enhances prognostic classification of myeloid malignancies.
J. Biomed. Informatics
Matthew Ruffalo, Holleh Husseinzadeh, Hideki Makishima, Bartlomiej Przychodzen, Mohamed Ashkar, Mehmet Koyutürk, Jaroslaw P. Maciejewski, Thomas LaFramboise
2013 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
2013 — conf
Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error.
BCB
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
2012 J jnl
Accurate estimation of short read mapping quality for next-generation genome sequencing.
Bioinform.
Matthew Ruffalo, Mehmet Koyutürk, Soumya Ray, Thomas LaFramboise
2011 J jnl
Comparative analysis of algorithms for next-generation sequencing read alignment.
Bioinform.
Matthew Ruffalo, Thomas LaFramboise, Mehmet Koyutürk
2010 Misc conf
COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays.
Pacific Symposium on Biocomputing
Gökhan Yavas, Mehmet Koyutürk, Z. Meral Özsoyoglu, Meetha P. Gould, Thomas LaFramboise
2010 — conf
Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations.
PRIB
Gökhan Yavas, Mehmet Koyutürk, Thomas LaFramboise
2010 J jnl
Power to detect selective allelic amplification in genome-wide scans of tumor data.
Bioinform.
Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er
2009 J jnl
A flexible rank-based framework for detecting copy number aberrations from array data.
Bioinform.
Thomas LaFramboise, Wendy Winckler, Roman K. Thomas
2005 J jnl
Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis.
PLoS Comput. Biol.
Thomas LaFramboise, Barbara A. Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R. Sellers, Matthew Meyerson
2004 J jnl
A graph-theoretic approach to testing associations between disparate sources of functional genomics data.
Bioinform.
Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman