Thomas L. Casavant

80 papers A* 1A 7B 18C 2Misc 1Journal 31Unranked 19
YearRankTypeTitle / Venue / Authors
2022 J jnl
Representative random sampling: an empirical evaluation of a novel bin stratification method for model performance estimation.
Stat. Comput.
Michael C. Rendleman, Brian J. Smith, Guadalupe Canahuate, Terry A. Braun, John M. Buatti, Thomas L. Casavant
2019 J jnl
Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality.
BMC Bioinform.
Michael C. Rendleman, John M. Buatti, Terry A. Braun, Brian J. Smith, Chibuzo Nwakama, Reinhard R. Beichel, Bartley Brown, Thomas L. Casavant
2017 — conf
Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms.
EMBC
Yusung Kim, Kaustubh Anil Patwardhan, Reinhard R. Beichel, Brian J. Smith, Christopher Mart, Kristin A. Plichta, Tangel Chang, Milan Sonka, Michael M. Graham, Vince Magnotta, Thomas L. Casavant, Junyi Xia, John M. Buatti
2015 J jnl
CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays.
J. Biomed. Informatics
Corey W. Goodman, Heather J. Major, William D. Walls, Val C. Sheffield, Thomas L. Casavant, Benjamin W. Darbro
2014 J jnl
Cordova: Web-based management of genetic variation data.
Bioinform.
Sean S. Ephraim, Nikhil Anand, Adam P. DeLuca, Kyle R. Taylor, Diana L. Kolbe, Allen C. Simpson, Hela Azaiez, Christina M. Sloan, A. Eliot Shearer, Andrea R. Hallier, Thomas L. Casavant, Todd E. Scheetz, Richard J. H. Smith, Terry A. Braun
2013 J jnl
Computational identification of operon-like transcriptional loci in eukaryotes.
Comput. Biol. Medicine
Kishore Nannapaneni, Yehuda Ben-Shahar, Henry L. Keen, Michael J. Welsh, Thomas L. Casavant, Todd E. Scheetz
2012 J jnl
Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data.
J. Integr. Bioinform.
Jinlu Cai, Henry L. Keen, Curt D. Sigmund, Thomas L. Casavant
2011 C conf
AudioGene: Computer-based prediction of genetic factors involved in non-syndromic hearing impairment.
AICCSA
Kyle R. Taylor, Adam P. DeLuca, Corey W. Goodman, Bruce W. Tompkins, Todd E. Scheetz, Michael S. Hildebrand, Patrick L. M. Huygen, Richard J. H. Smith, Terry A. Braun, Thomas L. Casavant
2011 C conf
Sequencing and disease variation detection tools and techniques.
AICCSA
Adam P. DeLuca, Alex H. Wagner, Kyle R. Taylor, Ben Faga, David Thole, Val C. Sheffield, Edwin M. Stone, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun
2011 J jnl
Validation of computational prediction of horizontal gene transfer events - XenoCluster.
J. Supercomput.
Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant
2009 B conf
Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application.
PaCT
Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant
2008 J jnl
A knowledge-based approach to predict intragenic deletions or duplications.
Bioinform.
Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz
2007 J jnl
Transcript Annotation Prioritization and Screening System (TRApss) for Mutation Screening.
J. Bioinform. Comput. Biol.
Brian O'Leary, Steven G. Davis, Michael F. Smith, Bartley Brown, Mathew B. Kemp, Hakeem G. Almabrazi, Jason A. Grundstad, Thomas Burns, Vladimir Leontiev, Jeaneen Andorf, Abbot F. Clark, Val C. Sheffield, Thomas L. Casavant, Todd E. Scheetz, Edwin M. Stone, Terry A. Braun
2006 J jnl
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome.
Silico Biol.
Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz
2005 J jnl
Gene transcript clustering: a comparison of parallel approaches.
Future Gener. Comput. Syst.
Todd E. Scheetz, Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Thomas L. Casavant
2005 B conf
XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies.
PaCT
Jesse D. Walters, Thomas L. Casavant, John P. Robinson, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz
2003 B conf
Alternative Parallelization Strategies in EST Clustering.
PaCT
Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Todd E. Scheetz, Thomas L. Casavant
2003 J jnl
ESTprep: Preprocessing CDNA Sequence Reads.
Bioinform.
Todd E. Scheetz, Nishank Trivedi, Chad A. Roberts, Tamara Kucaba, Brian Berger, Natalie L. Robinson, Clayton L. Birkett, Allen J. Gavin, Brian O'Leary, Terry A. Braun, Maria F. Bonaldo, John P. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant
2003 J jnl
Identifying Candidate Disease Genes with High-Performance Computing.
J. Supercomput.
Terry A. Braun, Todd E. Scheetz, Gregg Webster, Abe Clark, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant
2002 J jnl
Parallel creation of non-redundant gene indices from partial mRNA transcripts.
Future Gener. Comput. Syst.
Nishank Trivedi, Jared Bischof, Steve Davis, Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant
2002 J jnl
Pooled library tissue tags for EST-based gene discovery.
Bioinform.
Allen J. Gavin, Todd E. Scheetz, Chad A. Roberts, Brian O'Leary, Terry A. Braun, Val C. Sheffield, Marcelo Bento Soares, John P. Robinson, Thomas L. Casavant
2001 B conf
A Parallel Expressed Sequence Tag (EST) Clustering Program.
PaCT
Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Thomas L. Casavant
2001 J jnl
A parallel/distributed architecture for hierarchically heterogeneous web-based cooperative applications.
Future Gener. Comput. Syst.
Thomas L. Casavant, Terry A. Braun, Sureshkumar Kaliannan, Todd E. Scheetz, Kyle J. Munn, Clayton L. Birkett
2001 B conf
I-DOCS: Distributed Agent-Assisted Knowledge Fusion for Disease Gene Discovery.
ICPADS
Andrew B. Williams, Todd A. Krygowski, Thomas L. Casavant
2001 J jnl
Parallelization of local BLAST service on workstation clusters.
Future Gener. Comput. Syst.
R. C. Braun, Kevin T. Pedretti, Thomas L. Casavant, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts
1999 — conf
A Parallel/Distributed Srchitecture for Hierarcally Heterogeneous Web-Based Cooperative Applications.
HPCN Europe
Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Sureshkumar Kaliannan
1999 B conf
Three Complementary Approaches to Parallelization of Local BLAST Service on Workstation Clusters (invited paper).
PaCT
Kevin T. Pedretti, Thomas L. Casavant, R. C. Braun, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts
1998 J jnl
GenoMap: A Distributed System for Unifying Genotyping and Genetic Linkage Analysis.
Parallel Comput.
Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant
1997 B conf
Modeling the impact of run-time uncertainty on optimal computation scheduling using feedback.
ICPP
Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland
1997 J jnl
Perspectives on high performance network computing.
Future Gener. Comput. Syst.
Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy
1997 B conf
Using Run-Time Uncertainty to Robustly Schedule Parallel Computation.
PaCT
Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland
1996 — conf
Accounting for Uncertainty in the Recovers of Traces for Parallel Computing Systems.
Parcella
Todd E. Scheetz, Julie A. Gannon, Richard D. Dietz, Terry A. Braun, Thomas L. Casavant, Mark S. Andersland
1996 — conf
Mapping Techniques for Parallel Evaluation of Chains of Recurrences.
IPPS
Eugene V. Zima, Karthi R. Vadivelu, Thomas L. Casavant
1996 — conf
Perspectives for High Performance Computing in Workstation Networks.
HPCN Europe
Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy
1995 — conf
Implementing communication latency hiding in high-latency computer networks.
HPCN Europe
Volker Strumpen, Thomas L. Casavant
1994 B conf
Exploting communication Latency Hiding for Parallel Network.
ICPADS
Volker Strumpen, Thomas L. Casavant
1994 — book
Readings in distributed computing systems.
Thomas L. Casavant, Mukesh Singhal
1994 — conf
Trace Recovery in Multi-Processing Systems: Architectural Considerations.
ICPP (2)
Julie A. Gannon, K. J. Williams, Mark S. Andersland, Thomas L. Casavant, J. E. Lummp Jr.
1994 A conf
Using Perturbation Tracking to Compensate for Intrusion in Message-Passing Systems.
ICDCS
Julie A. Gannon, K. J. Williams, Mark S. Andersland, J. E. Lummp Jr., Thomas L. Casavant
1994 B conf
What Types of Research Papers Should We Be Writing?
ICPADS
Thomas L. Casavant, Chi-Yuan Chin, Wen-Tsuen Chen, Kang G. Shin, Earl E. Swartzlander Jr., Joseph E. Urban
1993 — conf
Critical Performance Path Analysis, and Efficient Code Generation Issues, for the Seamless Architecture.
IPPS
D. L. Bright, Samuel A. Fineberg, Brent H. Pease, M. L. Roderick, S. Sundaram, Thomas L. Casavant
1993 B conf
The IMPROV Meta-Tool Design Methodology for Visualization of Parallel Programs.
MASCOTS
Thomas L. Casavant, James Arthur Kohl
1993 J jnl
Tools and Methods for Visualization of Parallel Systems and Computations - Guest Editor's Introduction.
J. Parallel Distributed Comput.
Thomas L. Casavant
1992 — conf
A Preliminary Performance Evaluation of the Seamless Parallel Processing System Architecture.
ICPP (1)
Samuel A. Fineberg, Thomas L. Casavant
1992 B conf
A software engineering, visualization methodology for parallel processing systems.
COMPSAC
James Arthur Kohl, Thomas L. Casavant
1992 J jnl
Models and Algorithms for Coscheduling Compute-Intensive Tasks on a Network of Workstations.
J. Parallel Distributed Comput.
Mikhail J. Atallah, Christina Lock Black, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant
1992 J jnl
Report of the Purdue Workshop on Grand Challenges in Computer Architecture for the Support of High Performance Computing.
J. Parallel Distributed Comput.
Howard Jay Siegel, Seth Abraham, William L. Bain, Kenneth E. Batcher, Thomas L. Casavant, Doug DeGroot, Jack B. Dennis, David C. Douglas, Tse-Yun Feng, James R. Goodman, Alan Huang, Harry F. Jordan, J. Robert Jamp, Yale N. Patt, Alan Jay Smith, James E. Smith, Lawrence Snyder, Harold S. Stone, Russ Tuck, Benjamin W. Wah
1992 A* conf
Seamless - a latency-tolerant RISC-based multiprocessor architecture.
ISCA
Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease
1992 J jnl
Specification and Analysis of Parallel/Distributed Software and Systems by Petri Nets With Transition Enabling Functions.
IEEE Trans. Software Eng.
Yiannis E. Papelis, Thomas L. Casavant
1992 — conf
The Seamless Approach to Reconciling Communication and Locality in Distributed-Memory Parallel Systems.
IPPS
Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease
1991 J jnl
CAPS: A Coding Aid For PASM.
Commun. ACM
James E. Lumpp Jr., Samuel A. Fineberg, Wayne G. Nation, Thomas L. Casavant, Edward C. Bronson, Howard Jay Siegel, Pierre H. Pero, Thomas Schwederski, Dan C. Marinescu
1991 A conf
Co-scheduling compute-intensive tasks on a network of workstations: model and algorithms.
ICDCS
Mikhail J. Atallah, Christina Lock, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant
1991 A conf
Debugging and performance monitoring for distributed systems: problems and prospects.
ICDCS
Thomas L. Casavant, Peter C. Bates, Thomas Bemmerl, Gary M. Koob, Daniel A. Reed, Zary Segall
1991 B conf
Design of a system for software testing and debugging for multiprocessor avionics systems.
COMPSAC
James E. Lumpp Jr., Roger K. Shultz, Thomas L. Casavant
1991 J jnl
Distributed Computing Systems (Guest Editors' Introduction).
Computer
Mukesh Singhal, Thomas L. Casavant
1991 J jnl
Experimental Analysis of a Mixed-Mode Parallel Architecture Using Bitonic Sequence Sorting.
J. Parallel Distributed Comput.
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
1991 — conf
Recovering Unconrupted Event Traces from Corrupted Event Traces in Parallel/Distributed Computing Systems.
ICPP (2)
Mark S. Andersland, Thomas L. Casavant
1991 — conf
Use of PARADISE: A Meta-Tool for Visualizing Parallel Systems.
IPPS
James Arthur Kohl, Thomas L. Casavant
1991 — conf
XPAT: An Interactive Graphical Tool for Synthesis of Concurrent Software Using Petri Nets.
ICPP (2)
Yiannis E. Papelis, Thomas L. Casavant
1990 J jnl
A Communicating Finite Automata Approach to Modeling Distributed Computation and Its Application to Distributed Decision-Making.
IEEE Trans. Computers
Thomas L. Casavant, Jon G. Kuhl
1990 — conf
An Experimental Analysis of Image Correlation on Shared versus Non-Shared Memory MIMD Parallel Computers.
ICPP (3)
Silvio Picano, Thomas L. Casavant
1990 — conf
Experimental Analysis of a Mixed-Mode Parallel Architecture Performing Sequence Sorting.
ICPP (3)
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
1990 J jnl
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System.
IEEE Trans. Parallel Distributed Syst.
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
1990 A conf
Experimental analysis of communication/data-conditional aspects of a mixed-mode parallel architecture via synthetic computations.
SC
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
1990 B conf
Mathematical transformation of Petri-nets for development of parallel/distributed programs.
COMPSAC
Yiannis E. Papelis, Thomas L. Casavant
1990 J jnl
Models for Monitoring and Debugging Tools for Parallel and Distributed Software.
J. Parallel Distributed Comput.
Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel
1990 — conf
Optimizing Task Migration Transfers Using Multistage Cube Networks.
ICPP (1)
Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant
1990 A conf
Specification and Identification of Events for Debugging and Performance Monitoring of Distributed Multiprocessor Systems.
ICDCS
James E. Lumpp Jr., Howard Jay Siegel, Dan C. Marinescu, Thomas L. Casavant
1989 B conf
A model for monitoring and debugging parallel and distributed software.
COMPSAC
Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel
1989 — conf
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System.
ICPP (1)
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
1989 Misc conf
Experimental analysis of multi-mode fast Fourier transforms on the PASM parallel processing system.
ICASSP
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
1989 B conf
Software routing support for task migration in hypercube multiprocessor systems.
COMPSAC
Michael A. McSherry, Thomas L. Casavant
1989 — conf
Task Migration Transfers in Multistage Cube Based Parallel Systems.
ICPP (1)
Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant
1988 J jnl
A Taxonomy of Scheduling in General-Purpose Distributed Computing Systems.
IEEE Trans. Software Eng.
Thomas L. Casavant, Jon G. Kuhl
1988 J jnl
Effects of Response and Stability on Scheduling in Distributed Computing Systems.
IEEE Trans. Software Eng.
Thomas L. Casavant, Jon G. Kuhl
1988 B conf
Experimental analysis of SIMD recursive digital filtering on the PASM system prototype.
COMPSAC
M. J. McPheters Jr., Thomas L. Casavant
1988 B conf
Low-level programming of parallel supercomputers.
COMPSAC
Thomas L. Casavant
1988 — conf
Non-Deterministic Instruction Time Experiments on the PASM System Prototype.
ICPP (1)
Samuel A. Fineberg, Thomas L. Casavant, Thomas Schwederski, Howard Jay Siegel
1987 A conf
Analysis of Three Dynamic Distributed Load-Balancing Strategies with Varying Global Information Requirements.
ICDCS
Thomas L. Casavant, Jon G. Kuhl
1986 A conf
A Formal Model of Distributed Decision-Making and Its Application to Distributed Load Balancing.
ICDCS
Thomas L. Casavant, Jon G. Kuhl