Thomas K. F. Wong

29 papers B 1C 1Journal 15Unranked 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data.
BMC Bioinform.
Teng Li, Yiran Zou, Xianghan Li, Thomas K. F. Wong, Allen G. Rodrigo
2021 J jnl
An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes.
PLoS Comput. Biol.
Thomas K. F. Wong, Teng Li, Louis Ranjard, Steven H. Wu, Jeet Sukumaran, Allen G. Rodrigo
2020 J jnl
Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage.
BMC Bioinform.
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
2019 J jnl
Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage.
BMC Bioinform.
Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
2018 J jnl
HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations.
BMC Bioinform.
Thomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo
2014 J jnl
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.
Bioinform.
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
2013 — conf
A Local Structural Prediction Algorithm for RNA Triple Helix Structure.
PRIB
Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu
2013 — conf
Comparison of Cutoff Strategies for Geometrical Features in Machine Learning-Based Scoring Functions.
ADMA (2)
Shirley W. I. Siu, Thomas K. F. Wong, Simon Fong
2012 J jnl
An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence.
IEEE ACM Trans. Comput. Biol. Bioinform.
Christopher Ma, Thomas K. F. Wong, Tak Wah Lam, Wing-Kai Hon, Kunihiko Sadakane, Siu-Ming Yiu
2012 — conf
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples.
BCB
Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting
2012 J jnl
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots.
IEEE ACM Trans. Comput. Biol. Bioinform.
Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu
2012 J jnl
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.
Bioinform.
Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam
2012 J jnl
Structural Alignment of RNA with Triple Helix Structure.
J. Comput. Biol.
Thomas K. F. Wong, Siu-Ming Yiu
2011 — conf
Algorithms for pseudoknot classification.
BCB
Thomas K. F. Wong, Hui-Ting Yu, Bay-Yuan Hsu, Tak Wah Lam, Wing-Kai Hon, Siu-Ming Yiu
2011 — conf
Detection of novel tandem duplication with next-generation sequencing.
BCB
Xuan Liu, Shing-Wan Choi, Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu
2011 J jnl
RNASAlign: RNA Structural Alignment System.
Bioinform.
Thomas K. F. Wong, Kwok-Lung Wan, Bay-Yuan Hsu, Brenda W. Y. Cheung, Wing-Kai Hon, Tak Wah Lam, Siu-Ming Yiu
2011 J jnl
Structural Alignment of RNA with Complex Pseudoknot Structure.
J. Comput. Biol.
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Brenda W. Y. Cheung, Siu-Ming Yiu
2011 — ch.
Structural Alignment of RNAs with Pseudoknots.
Handbook of Research on Computational and Systems Biology
Thomas K. F. Wong, Siu-Ming Yiu
2010 J jnl
Improving the accuracy of signal transduction pathway construction using level-2 neighbours.
Int. J. Bioinform. Res. Appl.
Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu, Simon C. K. Wong
2010 — conf
Investigation of the Lineage and Tissue Specificity of Genes.
BIOCOMP
Yizhen Jia, Thomas K. F. Wong, You-Qiang Song, David K. Smith, Siu-Ming Yiu
2010 — conf
Local Structural Alignment of RNA with Affine Gap Model.
ISBRA
Thomas K. F. Wong, Brenda W. Y. Cheung, Tak Wah Lam, Siu-Ming Yiu
2010 — conf
Prediction of Minimum Free Energy Structure for Simple Non-standard Pseudoknot.
BIOSTEC (Selected Papers)
Thomas K. F. Wong, Siu-Ming Yiu
2010 — conf
Structure Prediction of Simple Non-standard Pseudoknot.
BIOINFORMATICS
Thomas K. F. Wong, Siu-Ming Yiu
2009 J jnl
Correcting short reads with high error rates for improved sequencing result.
Int. J. Bioinform. Res. Appl.
Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu
2009 C conf
Structural Alignment of RNA with Complex Pseudoknot Structure.
WABI
Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2009 — conf
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning.
BICoB
Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
2008 B conf
A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots.
APBC
Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu
2008 J jnl
Finding Alternative Splicing Patterns with Strong Support from expressed Sequences on Individual exons/introns.
J. Bioinform. Comput. Biol.
Thomas K. F. Wong, Tak Wah Lam, Wanling Yang, Siu-Ming Yiu
2007 — conf
Finding Alternative Splicing Patterns with Strong Support From Expressed Sequences.
BIOCOMP
Thomas K. F. Wong, Tak Wah Lam, W. L. Yang, Siu-Ming Yiu