Thomas J. Naughton

92 papers A 4B 8C 12Misc 2Journal 26Unranked 37

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Bridging paradigms: Designing for HPC-Quantum convergence. Future Gener. Comput. Syst. Amir Shehata, Peter Groszkowski, Thomas J. Naughton, Muralikrishnan Gopalakrishnan Meena, Elaine Wong, Daniel Claudino, Rafael Ferreira da Silva, Thomas Beck
2025	J	`jnl`	Building a Software Stack for Quantum-HPC Integration. CoRR Amir Shehata, Peter Groszkowski, Thomas J. Naughton, Muralikrishnan Gopalakrishnan Meena, Elaine Wong, Daniel Claudino, Rafael Ferreira da Silva, Thomas Beck
2025	—	`conf`	Teaching Computational Thinking Through Active Games: Insights from Teacher Training. ISSEP Taina Lehtimäki, Eddie Costello, Kevin Casey, Aidan Mooney, Rosemary Monahan, Thomas J. Naughton
2024	Misc	`conf`	A Framework for Integrating Quantum Simulation and High Performance Computing. QCE Amir Shehata, Thomas J. Naughton, In-Saeng Suh
2024	J	`jnl`	A Framework for Integrating Quantum Simulation and High Performance Computing. CoRR Amir Shehata, Thomas J. Naughton, In-Saeng Suh
2024	J	`jnl`	Bringing HPE Slingshot 11 support to Open MPI. Concurr. Comput. Pract. Exp. Amir Shehata, Thomas J. Naughton, David E. Bernholdt, Howard Pritchard
2024	Misc	`conf`	Integrating Quantum Computing with High-Performance Computing: A Streamlined Approach. QCE Amir Shehata, Thomas J. Naughton, In-Saeng Suh
2024	—	`conf`	Towards Sustainable Post-Exascale Leadership Computing. SC Workshops Woong Shin, James B. White, Wael R. Elwasif, Rafael Ferreira da Silva, Christopher Zimmer, Bronson Messer, Reuben D. Budiardja, Antigoni Georgiadou, Verónica Melesse Vergara, Jack Lange, Matthias Maiterth, Tim Osborne, Leah Huk, John K. Holmen, Nick Hagerty, Ahmad Maroof Karimi, Thomas J. Naughton, Ryan Adamson, Ryan Prout, Feiyi Wang, Scott Atchley, Kevin G. Thach, Thomas Beck, Sarp Oral
2023	—	`conf`	A Computational Thinking Obstacle Course Based on Bebras Tasks for K-12 Schools. ITiCSE (1) Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton
2023	—	`conf`	Computational Thinking Resources Inspired by Bebras. ITiCSE (2) Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton
2022	—	`conf`	A computational thinking module for secondary students and pre-service teachers using Bebras-style tasks. UKICER Taina Lehtimäki, James Hamm, Aidan Mooney, Kevin Casey, Rosemary Monahan, Thomas J. Naughton
2022	—	`conf`	Bebras-inspired Computational Thinking Primary School Resources Co-created by Computer Science Academics and Teachers. ITiCSE (1) Taina Lehtimäki, Rosemary Monahan, Aidan Mooney, Kevin Casey, Thomas J. Naughton
2022	—	`conf`	Emulation Framework for Distributed Large-Scale Systems Integration. SysCon Neena Imam, Nageswara S. V. Rao, Anees Al-Najjar, Thomas J. Naughton, Seth Hitefield
2022	C	`conf`	RADICAL-Pilot and PMIx/PRRTE: Executing Heterogeneous Workloads at Large Scale on Partitioned HPC Resources. JSSPP Mikhail Titov, Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha
2022	B	`conf`	The INTERSECT Open Federated Architecture for the Laboratory of the Future. SMC Christian Engelmann, Olga A. Kuchar, Swen Boehm, Michael J. Brim, Thomas J. Naughton, Suhas Somnath, Scott Atchley, Jack Lange, Ben Mintz, Elke Arenholz
2022	C	`conf`	Towards a Standard Process Management Infrastructure for Workflows Using Python. PDCAT Wael R. Elwasif, Thomas J. Naughton, Matthew B. Baker
2021	J	`jnl`	VFSIE - Development and Testing Framework for Federated Science Instruments. CoRR Anees Al-Najjar, Nageswara S. V. Rao, Neena Imam, Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl
2021	B	`conf`	Virtual Framework for Development and Testing of Federation Software Stack. LCN Anees Al-Najjar, Nageswara S. V. Rao, Neena Imam, Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl
2020	J	`jnl`	A survey of MPI usage in the US exascale computing project. Concurr. Comput. Pract. Exp. David E. Bernholdt, Swen Boehm, George Bosilca, Manjunath Gorentla Venkata, Ryan E. Grant, Thomas J. Naughton, Howard Pritchard, Martin Schulz, Geoffroy R. Vallée
2020	J	`jnl`	Application health monitoring for extreme-scale resiliency using cooperative fault management. Concurr. Comput. Pract. Exp. Pratul K. Agarwal, Thomas J. Naughton, Byung H. Park, David E. Bernholdt, Joshua Hursey, Al Geist
2020	B	`conf`	Software Framework for Federated Science Instruments. SMC Thomas J. Naughton, Seth Hitefield, Lawrence Sorrillo, Nageswara S. V. Rao, James Kohl, Wael R. Elwasif, Jean-Christophe Bilheux, Hassina Z. Bilheux, Swen Boehm, Jason Kincl, Satyabrata Sen, Neena Imam
2019	—	`conf`	Characterizing the Performance of Executing Many-tasks on Summit. IPDRM@SC Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha
2019	J	`jnl`	Characterizing the Performance of Executing Many-tasks on Summit. CoRR Matteo Turilli, André Merzky, Thomas J. Naughton, Wael R. Elwasif, Shantenu Jha
2018	C	`conf`	A comparison of Amazon Web Services and Microsoft Azure cloud platforms for high performance computing. ICCE Charlotte Kotas, Thomas J. Naughton, Neena Imam
2018	J	`jnl`	Epidemic failure detection and consensus for extreme parallelism. Int. J. High Perform. Comput. Appl. Amogh Katti, Giuseppe Di Fatta, Thomas J. Naughton, Christian Engelmann
2018	—	`conf`	Oak Ridge OpenSHMEM Benchmark Suite. OpenSHMEM Thomas J. Naughton, Ferrol Aderholdt, Matthew B. Baker, Swaroop Pophale, Manjunath Gorentla Venkata, Neena Imam
2017	—	`conf`	Balancing Performance and Portability with Containers in HPC: An OpenSHMEM Example. OpenSHMEM Thomas J. Naughton, Lawrence Sorrillo, Adam Simpson, Neena Imam
2017	J	`jnl`	Her2 Challenge Contest: A Detailed Assessment of Automated Her2 Scoring Algorithms in Whole Slide Images of Breast Cancer Tissues. CoRR Talha Qaiser, Abhik Mukherjee, Chaitanya Reddy Pb, Sai Dileep Munugoti, Vamsi Tallam, Tomi Pitkäaho, Taina Lehtimäki, Thomas J. Naughton, Matt Berseth, Aníbal Pedraza, Ramakrishnan Mukundan, Matthew Smith, Abhir Bhalerao, Erik Rodner, Marcel Simon, Joachim Denzler, Chao-Hui Huang, Gloria Bueno, David R. J. Snead, Ian O. Ellis, Mohammad Ilyas, Nasir M. Rajpoot
2017	—	`conf`	Preemptive Resource Management for Dynamically Arriving Tasks in an Oversubscribed Heterogeneous Computing System. IPDPS Workshops Dylan Machovec, Sudeep Pasricha, Anthony A. Maciejewski, Howard Jay Siegel, Gregory A. Koenig, Michael Wright, Marcia Hilton, Rajendra Rambharos, Thomas J. Naughton, Neena Imam
2017	J	`jnl`	Wireless Holographic Image Communications Relying on Unequal Error Protected Bitplanes. IEEE Trans. Veh. Technol. Yongkai Huo, Péter Tamás Kovács, Thomas J. Naughton, Lajos Hanzo
2016	—	`conf`	A Cooperative Approach to Virtual Machine Based Fault Injection. Euro-Par Workshops Thomas J. Naughton, Christian Engelmann, Geoffroy Vallée, Ferrol Aderholdt, Stephen L. Scott
2016	J	`jnl`	A new deadlock resolution protocol and message matching algorithm for the extreme-scale simulator. Concurr. Comput. Pract. Exp. Christian Engelmann, Thomas J. Naughton
2016	—	`conf`	Adding Fault Tolerance to NPB Benchmarks Using ULFM. FTXS@HPDC Zachary W. Parchman, Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, David E. Bernholdt, Stephen L. Scott
2015	C	`conf`	STCI: Scalable RunTime Component Infrastructure. EuroMPI Geoffroy Vallée, David E. Bernholdt, Swen Böhm, Thomas J. Naughton
2015	C	`conf`	Scalable and Fault Tolerant Failure Detection and Consensus. EuroMPI Amogh Katti, Giuseppe Di Fatta, Thomas J. Naughton, Christian Engelmann
2014	B	`conf`	Efficient Checkpointing of Virtual Machines Using Virtual Machine Introspection. CCGRID Ferrol Aderholdt, Fang Han, Stephen L. Scott, Thomas J. Naughton
2014	C	`conf`	Improving the Performance of the Extreme-Scale Simulator. DS-RT Christian Engelmann, Thomas J. Naughton
2014	C	`conf`	Supporting the Development of Resilient Message Passing Applications Using Simulation. PDP Thomas J. Naughton, Christian Engelmann, Geoffroy Vallée, Swen Böhm
2014	—	`—`	Towards a resilience investigation framework for high performance computing. Thomas J. Naughton
2014	—	`conf`	What Is the Right Balance for Performance and Isolation with Virtualization in HPC? Euro-Par Workshops (1) Thomas J. Naughton, Garry Smith, Christian Engelmann, Geoffroy Vallée, Ferrol Aderholdt, Stephen L. Scott
2013	—	`conf`	A Runtime Environment for Supporting Research in Resilient HPC System Software & Tools. CANDAR Geoffroy Vallée, Thomas J. Naughton, Swen Böhm, Christian Engelmann
2013	B	`conf`	Toward a Performance/Resilience Tool for Hardware/Software Co-design of High-Performance Computing Systems. ICPP Christian Engelmann, Thomas J. Naughton
2013	—	`conf`	Using Performance Tools to Support Experiments in HPC Resilience. Euro-Par Workshops Thomas J. Naughton, Swen Böhm, Christian Engelmann, Geoffroy Vallée
2012	J	`jnl`	Architecture for the next generation system management tools. Future Gener. Comput. Syst. Jérôme Gallard, Adrien Lebre, Christine Morin, Thomas J. Naughton, Stephen L. Scott, Geoffroy Vallée
2012	—	`conf`	Heterotic Computing Examples with Optics, Bacteria, and Chemicals. UCNC Susan Stepney, Samson Abramsky, Matthias Bechmann, Jerzy Gorecki, Viv Kendon, Thomas J. Naughton, Mario J. Pérez-Jiménez, Francisco José Romero-Campero, Angelika Sebald
2011	—	`conf`	5th Workshop on System-Level Virtualization for High Performance Computing (HPCVirt 2011). Euro-Par Workshops (1) Stephen L. Scott, Geoffroy Vallée, Thomas J. Naughton
2011	—	`conf`	A Case for Virtual Machine Based Fault Injection in a High-Performance Computing Environment. Euro-Par Workshops (1) Thomas J. Naughton, Geoffroy Vallée, Christian Engelmann, Stephen L. Scott
2011	C	`conf`	A Log-Scaling Fault Tolerant Agreement Algorithm for a Fault Tolerant MPI. EuroMPI Joshua Hursey, Thomas J. Naughton, Geoffroy Vallée, Richard L. Graham
2011	—	`conf`	Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation. POLICY Byung H. Park, Thomas J. Naughton, Pratul K. Agarwal, David E. Bernholdt, Al Geist, Jennifer L. Tippens
2010	—	`ed.`	High Performance Computing Systems and Applications, 23rd International Symposium, HPCS 2009, Kingston, ON, Canada, June 14-17, 2009, Revised Selected Papers HPCS Douglas J. K. Mewhort, Natalie M. Cann, Gary W. Slater, Thomas J. Naughton
2010	—	`conf`	Loadable Hypervisor Modules. HICSS Thomas J. Naughton, Geoffroy Vallée, Stephen L. Scott, Ferrol Aderholdt
2010	J	`jnl`	Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. J. Parallel Distributed Comput. Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
2010	J	`jnl`	System-level virtualization research at Oak Ridge National Laboratory. Future Gener. Comput. Syst. Stephen L. Scott, Geoffroy Vallée, Thomas J. Naughton, Anand Tikotekar, Christian Engelmann, Hong Ong
2009	B	`conf`	A tunable holistic resiliency approach for high-performance computing systems. PPoPP Stephen L. Scott, Christian Engelmann, Geoffroy Vallée, Thomas J. Naughton, Anand Tikotekar, George Ostrouchov, Chokchai Leangsuksun, Nichamon Naksinehaboon, Raja Nassar, Mihaela Paun, Frank Mueller, Chao Wang, Arun Babu Nagarajan, Jyothish Varma
2009	—	`ch.`	Optical Computing. Encyclopedia of Complexity and Systems Science Thomas J. Naughton, Damien Woods
2009	J	`jnl`	Optical computing. Appl. Math. Comput. Damien Woods, Thomas J. Naughton
2009	—	`conf`	Performance comparison of two virtual machine scenarios using an HPC application: a case study using molecular dynamics simulations. HPCVirt@EuroSys Anand Tikotekar, Hong Ong, Sadaf R. Alam, Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, Stephen L. Scott
2009	C	`conf`	Proactive Fault Tolerance Using Preemptive Migration. PDP Christian Engelmann, Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott
2008	B	`conf`	A Framework for Proactive Fault Tolerance. ARES Geoffroy Vallée, Kulathep Charoenpornwattana, Christian Engelmann, Anand Tikotekar, Chokchai Leangsuksun, Thomas J. Naughton, Stephen L. Scott
2008	—	`conf`	An Analysis of HPC Benchmarks in Virtual Machine Environments. Euro-Par Workshops Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Christian Engelmann, Stephen L. Scott
2008	—	`conf`	Effects of virtualization on a scientific application running a hyperspectral radiative transfer code on virtual machines. HPCVirt@EuroSys Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Christian Engelmann, Stephen L. Scott, Anthony M. Filippi
2008	J	`jnl`	Implementations of a Model of Physical Sorting. Int. J. Unconv. Comput. Niall Murphy, Thomas J. Naughton, Damien Woods, Beverley Henley, Kieran McDermott, Elaine Duffy, Peter J. M. Van Der Burgt, Niamh Woods
2008	—	`conf`	Parallel and Sequential Optical Computing. OSC Damien Woods, Thomas J. Naughton
2008	—	`conf`	Proposal for Modifications to the OSCAR Architecture to Address Challenges in Distributed System Management. HPCS Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott
2008	J	`jnl`	Scheduling in a dynamic heterogeneous distributed system using estimation error. J. Parallel Distributed Comput. Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
2008	C	`conf`	System-Level Virtualization for High Performance Computing. PDP Geoffroy Vallée, Thomas J. Naughton, Christian Engelmann, Hong Ong, Stephen L. Scott
2008	—	`conf`	Virtual System Environments. SVM Geoffroy Vallée, Thomas J. Naughton, Hong Ong, Anand Tikotekar, Christian Engelmann, Wesley Bland, Ferrol Aderholdt, Stephen L. Scott
2007	—	`conf`	Automatic Testing Tool for OSCAR Using System-level Virtualization. HPCS Geoffroy Vallée, Thomas J. Naughton, Wesley Bland, Stephen L. Scott
2007	—	`conf`	Design and Implementation of a Menu Based OSCAR Command Line Interface. HPCS Wesley Bland, Thomas J. Naughton, Geoffroy Vallée, Stephen L. Scott
2007	C	`conf`	Evaluation of fault-tolerant policies using simulation. CLUSTER Anand Tikotekar, Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott, Chokchai Leangsuksun
2007	J	`jnl`	Histogram Approaches for Lossy Compression of Digital Holograms of Three-Dimensional Objects. IEEE Trans. Image Process. Alison E. Shortt, Thomas J. Naughton, Bahram Javidi
2007	J	`jnl`	MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Res. Thomas M. Keane, Thomas J. Naughton, James O. McInerney
2007	—	`conf`	System management software for virtual environments. Conf. Computing Frontiers Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott
2006	—	`conf`	A Component-Based Approach to Improving the Modularity of OSCAR. HPCS Geoffroy Vallée, Thomas J. Naughton, Stephen L. Scott, Jeffrey M. Squyres, Erich Focht
2006	J	`jnl`	Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. Algorithmica Thomas M. Keane, Andrew J. Page, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney
2006	A	`conf`	Distributed Monte Carlo simulation of light transportation in tissue. IPDPS Andrew J. Page, Shirley Coyle, Thomas M. Keane, Thomas J. Naughton, Charles Markham, Tomás E. Ward
2006	A	`conf`	OSCAR - OSCAR community meeting. SC Stephen L. Scott, Thomas J. Naughton, Geoffroy Vallée
2006	J	`jnl`	Three-Dimensional Imaging and Processing Using Computational Holographic Imaging. Proc. IEEE Yann Frauel, Thomas J. Naughton, Osamu Matoba, Enrique Tajahuerce-Romera, Bahram Javidi
2005	B	`conf`	A High-Throughput Bioinformatics Distributed Computing Platform. CBMS Thomas M. Keane, Andrew J. Page, James O. McInerney, Thomas J. Naughton
2005	J	`jnl`	An optical model of computation. Theor. Comput. Sci. Damien Woods, Thomas J. Naughton
2005	A	`conf`	Bioinformatics on a Heterogeneous Java Distributed System. IPDPS Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
2005	J	`jnl`	DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinform. Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, Grace P. McCormack
2005	J	`jnl`	DSEARCH: sensitive database searching using distributed computing. Bioinform. Thomas M. Keane, Thomas J. Naughton
2005	A	`conf`	Dynamic Task Scheduling using Genetic Algorithms for Heterogeneous Distributed Computing. IPDPS Andrew J. Page, Thomas J. Naughton
2005	J	`jnl`	Framework for Task Scheduling in Heterogeneous Distributed Computing Using Genetic Algorithms. Artif. Intell. Rev. Andrew J. Page, Thomas J. Naughton
2005	—	`conf`	OSCAR Meta-Package System. HPCS John Mugler, Thomas J. Naughton, Stephen L. Scott
2004	—	`conf`	Adaptive Scheduling across a Distributed Computation Platform. ISPDC/HeteroPar Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
2003	—	`conf`	Multi-tiered distributed computing platform. PPPJ Andrew J. Page, Thomas M. Keane, Richard Allen, Thomas J. Naughton, John Waldron
2002	—	`conf`	Distributed Java Platform with Programmable MIMD Capabilities. FIDJI Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron
2002	—	`conf`	Distributed computing for DNA analysis. PPPJ/IRE Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron
2002	—	`conf`	Emulation of an unconventional model of computation in Java. PPPJ/IRE Aidan J. Delaney, Thomas J. Naughton
2001	C	`conf`	On the Computational Power of a Continuous-Space Optical Model of Computation. MCU Thomas J. Naughton, Damien Woods