Thomas Girke

14 papers A 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2016 J jnl
bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.
J. Chem. Inf. Model.
Tyler W. H. Backman, Thomas Girke
2016 J jnl
systemPipeR: NGS workflow and report generation environment.
BMC Bioinform.
Tyler W. H. Backman, Thomas Girke
2014 J jnl
AlignGraph: algorithm for secondary
Bioinform.
Ergude Bao, Tao Jiang, Thomas Girke
2013 J jnl
BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences.
Bioinform.
Ergude Bao, Tao Jiang, Thomas Girke
2013 — conf
Differential gene expression analysis using coexpression and RNA-Seq data.
ICCABS
Ei-Wen Yang, Thomas Girke, Tao Jiang
2013 J jnl
Differential gene expression analysis using coexpression and RNA-Seq data.
Bioinform.
Ei-Wen Yang, Thomas Girke, Tao Jiang
2013 J jnl
fmcsR: mismatch tolerant maximum common substructure searching in R.
Bioinform.
Yan Wang, Tyler W. H. Backman, Kevin Horan, Thomas Girke
2011 J jnl
ChemMine tools: an online service for analyzing and clustering small molecules.
Nucleic Acids Res.
Tyler W. H. Backman, Yiqun Cao, Thomas Girke
2011 J jnl
SEED: efficient clustering of next-generation sequences.
Bioinform.
Ergude Bao, Tao Jiang, Isgouhi Kaloshian, Thomas Girke
2010 J jnl
Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing.
Bioinform.
Yiqun Cao, Tao Jiang, Thomas Girke
2010 J jnl
Predicting conserved protein motifs with Sub-HMMs.
BMC Bioinform.
Kevin Horan, Christian R. Shelton, Thomas Girke
2010 J jnl
Single feature polymorphism detection using recombinant inbred line microarray expression data.
Bioinform.
Xinping Cui, Na You, Thomas Girke, Richard Michelmore, Allen Van Deynze
2008 A conf
A maximum common substructure-based algorithm for searching and predicting drug-like compounds.
ISMB
Yiqun Cao, Tao Jiang, Thomas Girke
2008 J jnl
ChemmineR: a compound mining framework for R.
Bioinform.
Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke