Thomas Gatter

12 papers C 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Computing double-pushout graph transformation rules and atom-to-atom maps from KEGG RCLASS data.
Algorithms Mol. Biol.
Nora Beier, Thomas Gatter, Jakob L. Andersen, Peter F. Stadler
2025 J jnl
Crossover operators for molecular graphs with an application to virtual drug screening.
J. Cheminformatics
Nico Domschke, Bruno J. Schmidt, Thomas Gatter, Richard Golnik, Paul Eisenhuth, Fabian Liessmann, Jens Meiler, Peter F. Stadler
2025 J jnl
TRAMbio: a flexible python package for graph rigidity analysis of macromolecules.
BMC Bioinform.
Nicolas Handke, Thomas Gatter, Franziska Reinhardt, Peter F. Stadler
2024 J jnl
Partial Imaginary Transition State (ITS) Graphs: A Formal Framework for Research and Analysis of Atom-to-Atom Maps of Unbalanced Chemical Reactions and Their Completions.
Symmetry
Marcos E. González Laffitte, Klaus Weinbauer, Tieu-Long Phan, Nora Beier, Nico Domschke, Christoph Flamm, Thomas Gatter, Daniel Merkle, Peter F. Stadler
2021 J jnl
LazyB: fast and cheap genome assembly.
Algorithms Mol. Biol.
Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler
2021 — —
New Algorithms for Fast and Economic Assembly: Advances in Transcriptome and Genome Assembly
Thomas Gatter
2021 J jnl
Ryūtō: improved multi-sample transcript assembly for differential transcript expression analysis and more.
Bioinform.
Thomas Gatter, Peter F. Stadler
2020 — conf
Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile.
BSB
Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann, Andrea Queiroz Maranhão, Marcelo M. Brigido
2020 C conf
Economic Genome Assembly from Low Coverage Illumina and Nanopore Data.
WABI
Thomas Gatter, Sarah von Löhneysen, Polina Drozdova, Tom Hartmann, Peter F. Stadler
2019 J jnl
Ryūtō: network-flow based transcriptome reconstruction.
BMC Bioinform.
Thomas Gatter, Peter F. Stadler
2016 J jnl
Integrating Pareto Optimization into Dynamic Programming.
Algorithms
Thomas Gatter, Robert Giegerich, Cédric Saule
2016 J jnl
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res.
Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak