Thomas Fox

19 papers A 1Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
pyPept: a python library to generate atomistic 2D and 3D representations of peptides.
J. Cheminformatics
Rodrigo Ochoa, J. B. Brown, Thomas Fox
2022 — conf
A Cryo-CMOS Low-Power Semi-Autonomous Qubit State Controller in 14nm FinFET Technology.
ISSCC
David J. Frank, Sudipto Chakraborty, Kevin Tien, Pat Rosno, Thomas Fox, Mark Yeck, Joseph A. Glick, Raphael Robertazzi, Ray Richetta, John F. Bulzacchelli, Daniel Ramirez, Dereje Yilma, Andrew Davies, Rajiv V. Joshi, Shawn D. Chambers, Scott Lekuch, Ken Inoue, Devin Underwood, Dorothy Wisnieff, Christian W. Baks, Donald Bethune, John Timmerwilke, Blake R. Johnson, Brian P. Gaucher, Daniel J. Friedman
2022 J jnl
A Cryo-CMOS Low-Power Semi-Autonomous Transmon Qubit State Controller in 14-nm FinFET Technology.
IEEE J. Solid State Circuits
Sudipto Chakraborty, David J. Frank, Kevin Tien, Pat Rosno, Mark Yeck, Joseph A. Glick, Raphael Robertazzi, Ray Richetta, John F. Bulzacchelli, Devin Underwood, Daniel Ramirez, Dereje Yilma, Andrew Davies, Rajiv V. Joshi, Shawn D. Chambers, Scott Lekuch, Ken Inoue, Dorothy Wisnieff, Christian W. Baks, Donald S. Bethune, John Timmerwilke, Thomas Fox, Peilin Song, Blake R. Johnson, Brian P. Gaucher, Daniel J. Friedman
2022 A conf
A Cryo-CMOS Transmon Qubit Controller and Verification with FPGA Emulation.
DATE
Kevin Tien, Ken Inoue, Scott Lekuch, David J. Frank, Sudipto Chakraborty, Pat Rosno, Thomas Fox, Mark Yeck, Joseph A. Glick, Raphael Robertazzi, Ray Richetta, John F. Bulzacchelli, Daniel Ramirez, Dereje Yilma, Andrew Davies, Rajiv V. Joshi, Devin Underwood, Dorothy Wisnieff, Christian W. Baks, Donald Bethune, John Timmerwilke, Blake R. Johnson, Brian P. Gaucher, Daniel J. Friedman
2022 J jnl
BILN: A Human-Readable Line Notation for Complex Peptides.
J. Chem. Inf. Model.
Thomas Fox, Michael Bieler, Peter Haebel, Rodrigo Ochoa, Stefan Peters, Alexander Weber
2022 J jnl
Collaborative Assessment of Molecular Geometries and Energies from the Open Force Field.
J. Chem. Inf. Model.
Lorenzo D'amore, David F. Hahn, David L. Dotson, Joshua T. Horton, Jamshed Anwar, Ian Craig, Thomas Fox, Alberto Gobbi, Sirish Kaushik Lakkaraju, Xavier Lucas, Katharina Meier, David L. Mobley, Arjun Narayanan, Christina E. M. Schindler, William C. Swope, Pieter J. in 't Veld, Jeffrey Wagner, Bai Xue, Gary Tresadern
2022 J jnl
Protocol for iterative optimization of modified peptides bound to protein targets.
J. Comput. Aided Mol. Des.
Rodrigo Ochoa, Pilar Cossio, Thomas Fox
2020 J jnl
Assessing the accuracy of octanol-water partition coefficient predictions in the SAMPL6 Part II log P Challenge.
J. Comput. Aided Mol. Des.
Mehtap Isik Bennett, Teresa Danielle Bergazin, Thomas Fox, Andrea Rizzi, John D. Chodera, David L. Mobley
2018 J jnl
Peptidic Macrocycles - Conformational Sampling and Thermodynamic Characterization.
J. Chem. Inf. Model.
Anna S. Kamenik, Uta F. Lessel, Julian E. Fuchs, Thomas Fox, Klaus R. Liedl
2014 J jnl
Accuracy Assessment and Automation of Free Energy Calculations for Drug Design.
J. Chem. Inf. Model.
Clara D. Christ, Thomas Fox
2014 J jnl
Heteroaromatic π-Stacking Energy Landscapes.
J. Chem. Inf. Model.
Roland G. Huber, Michael A. Margreiter, Julian E. Fuchs, Susanne von Grafenstein, Christofer S. Tautermann, Klaus R. Liedl, Thomas Fox
2014 — conf
Modellierung und Generierung von Testdaten für Datenbank-basierte Anwendungen.
Informatiktage
Nikolaus Moll, Christian Baranowski, Thomas Fox, Jürgen Wäsch
2013 J jnl
Economical and Accurate Protocol for Calculating Hydrogen-Bond-Acceptor Strengths.
J. Chem. Inf. Model.
Ahmed M. El Kerdawy, Christofer S. Tautermann, Timothy Clark, Thomas Fox
2011 J jnl
A GRID-Derived Water Network Stabilizes Molecular Dynamics Computer Simulations of a Protease.
J. Chem. Inf. Model.
Hannes G. Wallnoefer, Klaus R. Liedl, Thomas Fox
2011 J jnl
A challenging system: Free energy prediction for factor Xa.
J. Comput. Chem.
Hannes G. Wallnoefer, Klaus R. Liedl, Thomas Fox
2009 J jnl
Bias-Correction of Regression Models: A Case Study on hERG Inhibition.
J. Chem. Inf. Model.
Katja Hansen, Fabian Rathke, Timon Schroeter, Georg Rast, Thomas Fox, Jan M. Kriegl, Sebastian Mika
2005 J jnl
A support vector machine approach to classify human cytochrome P450 3A4 inhibitors.
J. Comput. Aided Mol. Des.
Jan M. Kriegl, Thomas Arnhold, Bernd Beck, Thomas Fox
2000 J jnl
Computer based screening of compound databases: 1. Preselection of benzamidine-based thrombin inhibitors.
J. Comput. Aided Mol. Des.
Thomas Fox, Eric E. J. Haaksma
1993 J jnl
Electrostatic solvent effects on the electronic structure of ground and excited states of molecules: Applications of a cavity model based upon a finite element method.
J. Comput. Chem.
Thomas Fox, Notker Rösch, Randy J. Zauhar