Thomas E. Nichols

115 papers B 1Misc 1Journal 98Unranked 15

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Statistical Opportunities in Neuroimaging. CoRR Jian Kang, Thomas E. Nichols, Lexin Li, Martin A. Lindquist, Hongtu Zhu
2025	—	`conf`	Emerging Semantic Segmentation from Positive and Negative Coarse Label Learning. MLMI@MICCAI Le Zhang, Fuping Wu, Arun J. Thirunavukarasu, Kevin Bronik, Thomas E. Nichols, Bartlomiej W. Papiez
2025	J	`jnl`	Emerging Semantic Segmentation from Positive and Negative Coarse Label Learning. CoRR Le Zhang, Fuping Wu, Arun J. Thirunavukarasu, Kevin Bronik, Thomas E. Nichols, Bartlomiej W. Papiez
2025	J	`jnl`	MT-CooL: Multi-Task Cooperative Learning via Flat Minima Searching. IEEE Trans. Medical Imaging Fuping Wu, Le Zhang, Yang Sun, Yuanhan Mo, Thomas E. Nichols, Bartlomiej W. Papiez
2024	J	`jnl`	A framework for longitudinal latent factor modelling of treatment response in clinical trials with applications to Psoriatic Arthritis and Rheumatoid Arthritis. J. Biomed. Informatics Fabian Falck, Xuan Zhu, Sahra Ghalebikesabi, Matthias Kormaksson, Marc Vandemeulebroecke, Cong Zhang, Ruvie Martin, Stephen Gardiner, Chun Hei Kwok, Dominique M. West, Luis A. Santos, Chengeng Tian, Yu Pang, Aimee Readie, Gregory Ligozio, Kunal K. Gandhi, Thomas E. Nichols, Ann-Marie Mallon, Luke J. Kelly, David Ohlssen, George Nicholson
2024	J	`jnl`	Decentralized Mixed Effects Modeling in COINSTAC. Neuroinformatics Sunitha Basodi, Rajikha Raja, Harshvardhan Gazula, Javier Tomas Romero, Sandeep R. Panta, Thomas Maullin-Sapey, Thomas E. Nichols, Vince D. Calhoun
2023	J	`jnl`	Association between brain similarity to severe mental illnesses and comorbid cerebral, physical, and cognitive impairments. NeuroImage Yizhou Ma, Mark D. Kvarta, Bhim M. Adhikari, Joshua Chiappelli, Xiaoming Du, Andrew van der Vaart, Eric L. Goldwaser, Heather Bruce, Kathryn S. Hatch, Si Gao, Ann Summerfelt, Neda Jahanshad, Paul M. Thompson, Thomas E. Nichols, L. Elliot Hong, Peter V. Kochunov
2023	J	`jnl`	Cardiovascular and metabolic health is associated with functional brain connectivity in middle-aged and older adults: Results from the Human Connectome Project-Aging study. NeuroImage Barnaly Rashid, Matthew F. Glasser, Thomas E. Nichols, David C. Van Essen, Meher R. Juttukonda, Nadine A. Schwab, Douglas N. Greve, Essa Yacoub, Allison E. Lovely, Melissa Terpstra, Michael P. Harms, Susan Y. Bookheimer, Beau M. Ances, David H. Salat, Steven E. Arnold
2023	J	`jnl`	Multi-Task Cooperative Learning via Searching for Flat Minima. CoRR Fuping Wu, Le Zhang, Yang Sun, Yuanhan Mo, Thomas E. Nichols, Bartlomiej W. Papiez
2023	—	`conf`	Multi-task Cooperative Learning via Searching for Flat Minima. ISIC/Care-AI/MedAGI/DeCaF@MICCAI Fuping Wu, Le Zhang, Yang Sun, Yuanhan Mo, Thomas E. Nichols, Bartlomiej W. Papiez
2022	J	`jnl`	Application of a convolutional neural network to the quality control of MRI defacing. Comput. Biol. Medicine Daniel J. Delbarre, Luis A. Santos, Habib Ganjgahi, Neil R. Horner, Aaron McCoy, Henrik Westerberg, Dieter A. Häring, Thomas E. Nichols, Ann-Marie Mallon
2022	J	`jnl`	BLMM: Parallelised computing for big linear mixed models. NeuroImage Thomas Maullin-Sapey, Thomas E. Nichols
2022	J	`jnl`	Causal inference on neuroimaging data with Mendelian randomisation. NeuroImage Bernd Taschler, Stephen M. Smith, Thomas E. Nichols
2022	J	`jnl`	Cerebral blood flow and cardiovascular risk effects on resting brain regional homogeneity. NeuroImage Bhim M. Adhikari, L. Elliot Hong, Zhiwei Zhao, Danny J. J. Wang, Paul M. Thompson, Neda Jahanshad, Alyssa H. Zhu, Stefan Holiga, Jessica A. Turner, Theo G. M. van Erp, Vince D. Calhoun, Kathryn S. Hatch, Heather Bruce, Stephanie M. Hare, Joshua Chiappelli, Eric L. Goldwaser, Mark D. Kvarta, Yizhou Ma, Xiaoming Du, Thomas E. Nichols, Alan R. Shuldiner, Braxton D. Mitchell, Juergen Dukart, Peter V. Kochunov
2021	J	`jnl`	Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. NeuroImage Si Gao, Brian Donohue, Kathryn S. Hatch, Shuo Chen, Tianzhou Ma, Yizhou Ma, Mark D. Kvarta, Heather Bruce, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, John Blangero, L. Elliot Hong, Sarah E. Medland, Habib Ganjgahi, Thomas E. Nichols, Peter V. Kochunov
2021	J	`jnl`	Confidence Sets for Cohen's NeuroImage Alexander Bowring, Fabian J. E. Telschow, Armin Schwartzman, Thomas E. Nichols
2021	J	`jnl`	Confound modelling in UK Biobank brain imaging. NeuroImage Fidel Alfaro-Almagro, Paul McCarthy, Soroosh Afyouni, Jesper L. R. Andersson, Matteo Bastiani, Karla L. Miller, Thomas E. Nichols, Stephen M. Smith
2021	J	`jnl`	Fisher Scoring for crossed factor linear mixed models. Stat. Comput. Thomas Maullin-Sapey, Thomas E. Nichols
2021	J	`jnl`	Meaningful associations in the adolescent brain cognitive development study. NeuroImage Anthony Steven Dick, Daniel A. Lopez, Ashley L. Watts, Steven Heeringa, Chase Reuter, Hauke Bartsch, Chun Chieh Fan, David N. Kennedy, Clare E. Palmer, Andrew Marshall, Frank Haist, Samuel Hawes, Thomas E. Nichols, Deanna M. Barch, Terry L. Jernigan, Hugh Garavan, Steven Grant, Vani Pariyadath, Elizabeth Hoffman, Michael C. Neale, Elizabeth A. Stuart, Martin P. Paulus, Kenneth J. Sher, Wesley K. Thompson
2021	J	`jnl`	Voxel-wise and spatial modelling of binary lesion masks: Comparison of methods with a realistic simulation framework. NeuroImage Petya Kindalova, Ioannis Kosmidis, Thomas E. Nichols
2020	J	`jnl`	Multi-subject Stochastic Blockmodels for adaptive analysis of individual differences in human brain network cluster structure. NeuroImage Dragana M. Pavlovic, Bryan Guillaume, Emma K. Towlson, Nicole M. Y. Kuek, Soroosh Afyouni, Petra E. Vértes, B. T. Thomas Yeo, Edward T. Bullmore, Thomas E. Nichols
2020	J	`jnl`	Multiple testing correction over contrasts for brain imaging. NeuroImage Bianca A. V. Alberton, Thomas E. Nichols, Humberto R. Gamba, Anderson M. Winkler
2020	J	`jnl`	Permutation inference for canonical correlation analysis. NeuroImage Anderson M. Winkler, Olivier Renaud, Stephen M. Smith, Thomas E. Nichols
2020	J	`jnl`	Quantifying uncertainty in brain-predicted age using scalar-on-image quantile regression. NeuroImage Marco Palma, Shahin Tavakoli, Julia Brettschneider, Thomas E. Nichols, Alzheimer's Disease Neuroimaging Initiative
2020	J	`jnl`	Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima. NeuroImage Samuel Davenport, Thomas E. Nichols
2019	J	`jnl`	Effective degrees of freedom of the Pearson's correlation coefficient under autocorrelation. NeuroImage Soroosh Afyouni, Stephen M. Smith, Thomas E. Nichols
2019	J	`jnl`	Estimation of brain age delta from brain imaging. NeuroImage Stephen M. Smith, Diego Vidaurre, Fidel Alfaro-Almagro, Thomas E. Nichols, Karla L. Miller
2019	J	`jnl`	Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Frontiers Neuroinformatics Peter V. Kochunov, Binish Patel, Habib Ganjgahi, Brian Donohue, Meghann Ryan, L. Elliot Hong, Xu Chen, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, Dennis van 't Ent, Anouk den Braber, Eco J. C. de Geus, Rachel M. Brouwer, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Thomas E. Nichols
2019	J	`jnl`	Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. NeuroImage Vaanathi Sundaresan, Ludovica Griffanti, Petya Kindalova, Fidel Alfaro-Almagro, Giovanna Zamboni, Peter M. Rothwell, Thomas E. Nichols, Mark Jenkinson
2019	J	`jnl`	Probabilistic TFCE: A generalized combination of cluster size and voxel intensity to increase statistical power. NeuroImage Tamás Spisák, Zsófia Spisák, Matthias Zunhammer, Ulrike Bingel, Stephen M. Smith, Thomas E. Nichols, Zsigmond Tamás Kincses
2019	J	`jnl`	Spatial confidence sets for raw effect size images. NeuroImage Alexander Bowring, Fabian J. E. Telschow, Armin Schwartzman, Thomas E. Nichols
2019	J	`jnl`	Towards algorithmic analytics for large-scale datasets. Nat. Mach. Intell. Danilo Bzdok, Thomas E. Nichols, Stephen M. Smith
2018	J	`jnl`	Directed functional connectivity using dynamic graphical models. NeuroImage Simon Schwab, Ruth Harbord, Valerio Zerbi, Lloyd T. Elliott, Soroosh Afyouni, Jim Q. Smith, Mark W. Woolrich, Stephen M. Smith, Thomas E. Nichols
2018	Misc	`conf`	Heritability estimates on resting state fMRI data using the ENIGMA analysis pipeline. PSB Bhim M. Adhikari, Neda Jahanshad, Dinesh Shukla, David C. Glahn, John Blangero, Richard C. Reynolds, Robert W. Cox, Els Fieremans, Jelle Veraart, Dmitry S. Novikov, Thomas E. Nichols, L. Elliot Hong, Paul M. Thompson, Peter V. Kochunov
2018	J	`jnl`	Insight and inference for DVARS. NeuroImage Soroosh Afyouni, Thomas E. Nichols
2018	J	`jnl`	The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds. NeuroImage Leah H. Somerville, Susan Y. Bookheimer, Randy L. Buckner, Gregory C. Burgess, Sandra W. Curtiss, Mirella Dapretto, Jennifer Stine Elam, Michael S. Gaffrey, Michael P. Harms, Cynthia Hodge, Sridhar Kandala, Erik K. Kastman, Thomas E. Nichols, Bradley L. Schlaggar, Stephen M. Smith, Kathleen M. Thomas, Essa Yacoub, David C. Van Essen, Deanna M. Barch
2017	J	`jnl`	Accelerating Permutation Testing in Voxel-wise Analysis through Subspace Tracking: A new plugin for SnPM. CoRR Felipe Gutierrez-Barragan, Vamsi K. Ithapu, Chris Hinrichs, Camille Maumet, Sterling C. Johnson, Thomas E. Nichols, Vikas Singh
2017	J	`jnl`	Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. NeuroImage Felipe Gutierrez-Barragan, Vamsi K. Ithapu, Chris Hinrichs, Camille Maumet, Sterling C. Johnson, Thomas E. Nichols, Vikas Singh
2017	J	`jnl`	Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. NeuroImage Chenyang Tao, Thomas E. Nichols, Xue Hua, Christopher R. K. Ching, Edmund T. Rolls, Paul M. Thompson, Jianfeng Feng
2017	J	`jnl`	Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. NeuroImage Susan D. Shenkin, Cyril R. Pernet, Thomas E. Nichols, Jean-Baptiste Poline, Paul M. Matthews, Aad van der Lugt, Clare E. Mackay, Linda J. Lanyon, Bernard Mazoyer, James P. Boardman, Paul M. Thompson, Nick C. Fox, Daniel S. Marcus, Aziz Sheikh, Simon R. Cox, Devasuda Anblagan, Dominic Job, David Alexander Dickie, David Rodriguez, Joanna M. Wardlaw
2017	J	`jnl`	Variance decomposition for single-subject task-based fMRI activity estimates across many sessions. NeuroImage Javier Gonzalez-Castillo, Gang Chen, Thomas E. Nichols, Peter A. Bandettini
2016	J	`jnl`	Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation. NeuroImage Simon B. Eickhoff, Thomas E. Nichols, Angela R. Laird, Felix Hoffstaedter, Katrin Amunts, Peter T. Fox, Danilo Bzdok, Claudia R. Eickhoff
2016	J	`jnl`	Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers Neuroinformatics Ruth Pauli, Alexander Bowring, Richard C. Reynolds, Gang Chen, Thomas E. Nichols, Camille Maumet
2016	J	`jnl`	Faster permutation inference in brain imaging. NeuroImage Anderson M. Winkler, Gerard R. Ridgway, Gwenaëlle Douaud, Thomas E. Nichols, Stephen M. Smith
2016	J	`jnl`	Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. NeuroImage Adam G. Thomas, Andrea Dennis, Nancy B. Rawlings, Charlotte J. Stagg, Lucy Matthews, Martyn Morris, Shannon H. Kolind, Sean Foxley, Mark Jenkinson, Thomas E. Nichols, Helen Dawes, Peter A. Bandettini, Heidi Johansen-Berg
2016	J	`jnl`	NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Vanessa V. Sochat, Satrajit S. Ghosh, Camille Maumet, Thomas E. Nichols, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies, Russell A. Poldrack
2016	J	`jnl`	Sharing the wealth: Neuroimaging data repositories. NeuroImage Simon B. Eickhoff, Thomas E. Nichols, John D. Van Horn, Jessica A. Turner
2016	J	`jnl`	The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. NeuroImage Peter V. Kochunov, Paul M. Thompson, Anderson M. Winkler, Mary Morrissey, Mao Fu, Thomas R. Coyle, Xiaoming Du, Florian Muellerklein, Anya Savransky, Christopher Gaudiot, Hemalatha Sampath, George Eskandar, Neda Jahanshad, Binish Patel, Laura Rowland, Thomas E. Nichols, Jeffrey R. O'Connell, Alan R. Shuldiner, Braxton D. Mitchell, L. Elliot Hong
2015	J	`jnl`	A Bayesian Model of Category-Specific Emotional Brain Responses. PLoS Comput. Biol. Tor D. Wager, Jian Kang, Timothy D. Johnson, Thomas E. Nichols, Ajay B. Satpute, Lisa Feldman Barrett
2015	J	`jnl`	A kernel machine method for detecting effects of interaction between multidimensional variable sets: An imaging genetics application. NeuroImage Tian Ge, Thomas E. Nichols, Debashis Ghosh, Elizabeth C. Mormino, Jordan W. Smoller, Mert R. Sabuncu
2015	J	`jnl`	A voxelation-corrected non-stationary 3D cluster-size test based on random field theory. NeuroImage Huanjie Li, Lisa D. H. Nickerson, Xuna Zhao, Thomas E. Nichols, Jia-Hong Gao
2015	J	`jnl`	Age differences in the brain mechanisms of good taste. NeuroImage Edmund T. Rolls, Michele B. Kellerhals, Thomas E. Nichols
2015	—	`conf`	Empirically investigating the statistical validity of SPM, FSL and AFNI for single subject fMRI analysis. ISBI Anders Eklund, Thomas E. Nichols, Mats T. Andersson, Hans Knutsson
2015	J	`jnl`	FVGWAS: Fast voxelwise genome wide association analysis of large-scale imaging genetic data. NeuroImage Meiyan Huang, Thomas E. Nichols, Chao Huang, Yang Yu, Zhaohua Lu, Rebecca C. Knickmeyer, Qianjin Feng, Hongtu Zhu
2015	J	`jnl`	Fast and powerful heritability inference for family-based neuroimaging studies. NeuroImage Habib Ganjgahi, Anderson M. Winkler, David C. Glahn, John Blangero, Peter V. Kochunov, Thomas E. Nichols
2015	J	`jnl`	Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kâmil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart J. Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox
2015	—	`conf`	Medial demons registration localizes the degree of genetic influence over subcortical shape variability: An N= 1480 meta-analysis. ISBI Boris A. Gutman, Neda Jahanshad, Christopher R. K. Ching, Yalin Wang, Peter V. Kochunov, Thomas E. Nichols, Paul M. Thompson
2015	J	`jnl`	Multi-level block permutation. NeuroImage Anderson M. Winkler, Matthew A. Webster, Diego Vidaurre, Thomas E. Nichols, Stephen M. Smith
2015	J	`jnl`	NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers Neuroinformatics Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Satrajit S. Ghosh, Camille Maumet, Vanessa V. Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies
2014	—	`conf`	Combining meta- and mega- analytic approaches for multi-site diffusion imaging based genetic studies: From the ENIGMA-DTI working group. ISBI Neda Jahanshad, Peter V. Kochunov, Thomas E. Nichols, Emma Sprooten, René C. W. Mandl, Laura Almasy, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Rali Dimitrova, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Hervé Lemaître, Lorna M. Lopez, Nicholas G. Martin, Katie L. McMahon, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Susan N. Wright, Mark E. Bastin, Andrew M. McIntosh, Dorret I. Boomsma, René S. Kahn, Anouk den Braber, Ian J. Deary, Hilleke E. Hulshoff Pol, Douglas Williamson, John Blangero, Dennis van 't Ent, David C. Glahn, Paul M. Thompson
2014	J	`jnl`	Corrigendum to "Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group" [NeuroImage 81 (2013) 455-469]. NeuroImage Neda Jahanshad, Peter V. Kochunov, Emma Sprooten, René C. W. Mandl, Thomas E. Nichols, Laura Almasy, John Blangero, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Nicholas G. Martin, Katie L. McMahon, Sarah E. Medland, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Hilleke E. Hulshoff Pol, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary, Paul M. Thompson
2014	J	`jnl`	Fast and accurate modelling of longitudinal and repeated measures neuroimaging data. NeuroImage Bryan Guillaume, Xue Hua, Paul M. Thompson, Lourens J. Waldorp, Thomas E. Nichols
2014	J	`jnl`	Imaging proteomics for diagnosis, monitoring and prediction of Alzheimer's disease. NeuroImage Arash Nazeri, Habib Ganjgahi, Tina Roostaei, Thomas E. Nichols, Mojtaba Zarei
2014	J	`jnl`	Multi-site study of additive genetic effects on fractional anisotropy of cerebral white matter: Comparing meta and megaanalytical approaches for data pooling. NeuroImage Peter V. Kochunov, Neda Jahanshad, Emma Sprooten, Thomas E. Nichols, René C. W. Mandl, Laura Almasy, Tom Booth, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Rali Dimitrova, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Hervé Lemaître, Lorna M. Lopez, Nicholas G. Martin, Katie L. McMahon, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Susan N. Wright
2014	B	`conf`	On study design in neuroimaging heritability analyses. Image Processing Mary Ellen Koran, Bo Li, Neda Jahanshad, Tricia A. Thornton-Wells, David C. Glahn, Paul M. Thompson, John Blangero, Thomas E. Nichols, Peter V. Kochunov, Bennett A. Landman
2014	J	`jnl`	Permutation inference for the general linear model. NeuroImage Anderson M. Winkler, Gerard R. Ridgway, Matthew A. Webster, Stephen M. Smith, Thomas E. Nichols
2014	J	`jnl`	Post-hoc power estimation for topological inference in fMRI. NeuroImage Joke Durnez, Beatrijs Moerkerke, Thomas E. Nichols
2014	—	`conf`	Spatial Modeling of Multiple Sclerosis for Disease Subtype Prediction. MICCAI (2) Bernd Taschler, Tian Ge, Kerstin Bendfeldt, Nicole Müller-Lenke, Timothy D. Johnson, Thomas E. Nichols
2013	J	`jnl`	Genetics of the connectome. NeuroImage Paul M. Thompson, Tian Ge, David C. Glahn, Neda Jahanshad, Thomas E. Nichols
2013	J	`jnl`	Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group. NeuroImage Neda Jahanshad, Peter V. Kochunov, Emma Sprooten, René C. W. Mandl, Thomas E. Nichols, Laura Almasy, John Blangero, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Nicholas G. Martin, Katie McMahon, Sarah E. Medland, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Hilleke E. Hulshoff Pol, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary, Paul M. Thompson
2013	—	`conf`	Power Estimates for Voxel-Based Genetic Association Studies Using Diffusion Imaging. CDMRI/MMBC@MICCAI Neda Jahanshad, Peter V. Kochunov, David C. Glahn, John Blangero, Thomas E. Nichols, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Clifford R. Jack Jr., Matt A. Bernstein, Michael W. Weiner, Arthur W. Toga, Paul M. Thompson
2013	J	`jnl`	Transcriptomics of cortical gray matter thickness decline during normal aging. NeuroImage Peter V. Kochunov, Jac Charlesworth, Anderson M. Winkler, L. Elliot Hong, Thomas E. Nichols, Joanne E. Curran, Emma Sprooten, Neda Jahanshad, Paul M. Thompson, M. P. Johnson, Jack W. Kent Jr., Bennett A. Landman, Braxton D. Mitchell, S. A. Cole, Thomas D. Dyer, Eric K. Moses, H. H. H. Goring, Laura Almasy, Ravindranath Duggirala, Rene L. Olvera, David C. Glahn, John Blangero
2012	J	`jnl`	Increasing power for voxel-wise genome-wide association studies: The random field theory, least square kernel machines and fast permutation procedures. NeuroImage Tian Ge, Jianfeng Feng, Derrek P. Hibar, Paul M. Thompson, Thomas E. Nichols
2012	J	`jnl`	Measuring and comparing brain cortical surface area and other areal quantities. NeuroImage Anderson M. Winkler, Mert R. Sabuncu, B. T. Thomas Yeo, Bruce Fischl, Douglas N. Greve, Peter V. Kochunov, Thomas E. Nichols, John Blangero, David C. Glahn
2012	J	`jnl`	Multiple testing corrections, nonparametric methods, and random field theory. NeuroImage Thomas E. Nichols
2012	J	`jnl`	Multivariate pattern classification of gray matter pathology in multiple sclerosis. NeuroImage Kerstin Bendfeldt, Stefan Klöppel, Thomas E. Nichols, Renata Smieskova, Pascal Kuster, Stefan Traud, Nicole Mueller-Lenke, Yvonne Naegelin, Ludwig Kappos, Ernst-Wilhelm Radue, Stefan J. Borgwardt
2012	J	`jnl`	The danger of systematic bias in group-level FMRI-lag-based causality estimation. NeuroImage Stephen M. Smith, Peter A. Bandettini, Karla L. Miller, T. E. J. Behrens, Karl J. Friston, Olivier David, Thomas T. Liu, Mark William Woolrich, Thomas E. Nichols
2011	J	`jnl`	Adjusting the effect of nonstationarity in cluster-based and TFCE inference. NeuroImage Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols
2011	J	`jnl`	False positives in neuroimaging genetics using voxel-based morphometry data. NeuroImage Matt Silver, Giovanni Montana, Thomas E. Nichols
2011	J	`jnl`	Network modelling methods for FMRI. NeuroImage Stephen M. Smith, Karla L. Miller, Gholamreza Salimi Khorshidi, Matthew A. Webster, Christian F. Beckmann, Thomas E. Nichols, Joseph D. Ramsey, Mark William Woolrich
2011	J	`jnl`	Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations. IEEE Trans. Medical Imaging Gholamreza Salimi Khorshidi, Thomas E. Nichols, Stephen M. Smith, Mark William Woolrich
2010	J	`jnl`	Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach. NeuroImage Maria Vounou, Thomas E. Nichols, Giovanni Montana
2010	J	`jnl`	Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression. NeuroImage Becky Inkster, Thomas E. Nichols, Philipp G. Saemann, Dorothee P. Auer, Florian Holsboer, Pierandrea Muglia, Paul M. Matthews
2009	J	`jnl`	A novel ANCOVA design for analysis of MEG data with application to a visual attention study. NeuroImage Dimitrios Pantazis, Gregory V. Simpson, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Richard M. Leahy
2009	—	`conf`	Adjusting the Neuroimaging Statistical Inferences for Nonstationarity. MICCAI (1) Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols
2009	J	`jnl`	Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease. NeuroImage Nicola Filippini, Anil Rao, Sally Wetten, Rachel A. Gibson, Michael Borrie, Danilo Guzman, Andrew Kertesz, Inge Loy-English, Julie Williams, Thomas E. Nichols, Brandon J. Whitcher, Paul M. Matthews
2009	J	`jnl`	Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis - A longitudinal voxel-based morphometry study. NeuroImage Kerstin Bendfeldt, Pascal Kuster, Stefan Traud, Hanspeter Egger, Sebastian Winklhofer, Nicole Mueller-Lenke, Yvonne Naegelin, Achim Gass, Ludwig Kappos, Paul M. Matthews, Thomas E. Nichols, Ernst-Wilhelm Radue, Stefan J. Borgwardt
2009	J	`jnl`	Cluster mass inference via random field theory. NeuroImage Hui Zhang, Thomas E. Nichols, Timothy D. Johnson
2009	J	`jnl`	Evaluating the consistency and specificity of neuroimaging data using meta-analysis. NeuroImage Tor D. Wager, Martin A. Lindquist, Thomas E. Nichols, Hedy Kober, Jared X. Van Snellenberg
2009	J	`jnl`	Meta-analysis of neuroimaging data: A comparison of image-based and coordinate-based pooling of studies. NeuroImage Gholamreza Salimi Khorshidi, Stephen M. Smith, John Keltner, Tor D. Wager, Thomas E. Nichols
2009	J	`jnl`	Simple group fMRI modeling and inference. NeuroImage Jeanette A. Mumford, Thomas E. Nichols
2009	J	`jnl`	Special Issue on Mathematics in Brain Imaging. NeuroImage Paul M. Thompson, Michael I. Miller, Russell A. Poldrack, Thomas E. Nichols, Jonathan E. Taylor, Keith J. Worsley, J. Tilak Ratnanather
2009	J	`jnl`	Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference. NeuroImage Stephen M. Smith, Thomas E. Nichols
2008	J	`jnl`	Guidelines for reporting an fMRI study. NeuroImage Russell A. Poldrack, Paul C. Fletcher, Richard N. Henson, Keith J. Worsley, Matthew Brett, Thomas E. Nichols
2008	J	`jnl`	Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation. NeuroImage Jeanette A. Mumford, Thomas E. Nichols
2007	—	`conf`	Exploring Human Visual Attention in an Meg Study of a Spatial Cueing Paradigm Using a Novel Ancova Design. ISBI Dimitrios Pantazis, Gregory V. Simpson, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Richard M. Leahy
2007	J	`jnl`	Rank-order versus mean based statistics for neuroimaging. NeuroImage Chris Rorden, Leonardo Bonilha, Thomas E. Nichols
2006	J	`jnl`	Estimation efficiency and statistical power in arterial spin labeling fMRI. NeuroImage Jeanette A. Mumford, Luis Hernandez-Garcia, Gregory R. Lee, Thomas E. Nichols
2006	J	`jnl`	Non-white noise in fMRI: Does modelling have an impact? NeuroImage Torben Ellegaard Lund, Kristoffer Hougaard Madsen, Karam Sidaros, Wen-Lin Luo, Thomas E. Nichols
2006	J	`jnl`	Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. NeuroImage Stephen M. Smith, Mark Jenkinson, Heidi Johansen-Berg, Daniel Rueckert, Thomas E. Nichols, Clare E. Mackay, Kate E. Watkins, Olga Ciccarelli, M. Zaheer Cader, Paul M. Matthews, Timothy Edward John Behrens
2005	J	`jnl`	A comparison of random field theory and permutation methods for the statistical analysis of MEG data. NeuroImage Dimitrios Pantazis, Thomas E. Nichols, Sylvain Baillet, Richard M. Leahy
2005	—	`conf`	Imaging of oscillatory behavior in event-related MEG studies. Computational Imaging Dimitrios Pantazis, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Gregory V. Simpson, Richard M. Leahy
2005	J	`jnl`	Valid conjunction inference with the minimum statistic. NeuroImage Thomas E. Nichols, Matthew Brett, Jesper L. R. Andersson, Tor D. Wager, Jean-Baptiste Poline
2004	—	`conf`	Combining Voxel Intensity And Cluster Extent With A Permutation Test Framework. ISBI Satoru Hayasaka, Thomas E. Nichols
2004	J	`jnl`	Combining voxel intensity and cluster extent with permutation test framework. NeuroImage Satoru Hayasaka, Thomas E. Nichols
2004	—	`conf`	Covariance of Kinetic Parameter Estimators Based on Time Activity Curve Reconstructions: Preliminary Study on 1D Dynamic Imaging. ISBI Sangtae Ahn, Jeffrey A. Fessler, Thomas E. Nichols, Robert A. Koeppe
2004	J	`jnl`	Nonstationary cluster-size inference with random field and permutation methods. NeuroImage Satoru Hayasaka, K. Luan Phan, Israel Liberzon, Keith J. Worsley, Thomas E. Nichols
2004	—	`conf`	Statistical Surface-Based Morphometry Using a Non-Parametric Approach. ISBI Dimitrios Pantazis, Richard M. Leahy, Thomas E. Nichols, Martin Styner
2003	J	`jnl`	Diagnosis and exploration of massively univariate neuroimaging models. NeuroImage Wen-Lin Luo, Thomas E. Nichols
2003	J	`jnl`	Optimization of experimental design in fMRI: a general framework using a genetic algorithm. NeuroImage Tor D. Wager, Thomas E. Nichols
2003	—	`conf`	Spatiotemporal Localization of Significant Activation in MEG Using Permutation Tests. IPMI Dimitrios Pantazis, Thomas E. Nichols, Sylvain Baillet, Richard M. Leahy
2003	J	`jnl`	Validating cluster size inference: random field and permutation methods. NeuroImage Satoru Hayasaka, Thomas E. Nichols
2002	J	`jnl`	Spatiotemporal reconstruction of list mode PET data. IEEE Trans. Medical Imaging Thomas E. Nichols, Jinyi Qi, Evren Asma, Richard M. Leahy
2002	J	`jnl`	Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate. NeuroImage Christopher R. Genovese, Nicole A. Lazar, Thomas E. Nichols
1999	—	`conf`	Continuous Time Dynamic PET Imaging Using List Mode Data. IPMI Thomas E. Nichols, Jinyi Qi, Richard M. Leahy