Thijs Beuming - RankMe

14 papers C 1Journal 13

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Are Deep Learning Structural Models Sufficiently Accurate for Virtual Screening? Application of Docking Algorithms to AlphaFold2 Predicted Structures. J. Chem. Inf. Model. Anna M. Díaz-Rovira, Helena Martín, Thijs Beuming, Lucía Díaz, Victor Guallar, Soumya S. Ray
2022	J	`jnl`	Are Deep Learning Structural Models Sufficiently Accurate for Free-Energy Calculations? Application of FEP+ to AlphaFold2-Predicted Structures. J. Chem. Inf. Model. Thijs Beuming, Helena Martín, Anna M. Díaz-Rovira, Lucía Díaz, Victor Guallar, Soumya S. Ray
2020	J	`jnl`	Rigorous Free Energy Simulations in Virtual Screening. J. Chem. Inf. Model. Zoe Cournia, Bryce K. Allen, Thijs Beuming, David A. Pearlman, Brian K. Radak, Woody Sherman
2018	J	`jnl`	Large-Scale Validation of Mixed-Solvent Simulations to Assess Hotspots at Protein-Protein Interaction Interfaces. J. Chem. Inf. Model. Phani Ghanakota, Herman van Vlijmen, Woody Sherman, Thijs Beuming
2016	J	`jnl`	In search of novel ligands using a structure-based approach: a case study on the adenosine A2A receptor. J. Comput. Aided Mol. Des. Eelke B. Lenselink, Thijs Beuming, Corine van Veen, Arnault Massink, Woody Sherman, Herman W. T. van Vlijmen, Adriaan P. IJzerman
2016	J	`jnl`	Relative Binding Free Energy Calculations Applied to Protein Homology Models. J. Chem. Inf. Model. Daniel Cappel, Michelle Lynn Hall, Eelke B. Lenselink, Thijs Beuming, Jun Qi, James Bradner, Woody Sherman
2014	J	`jnl`	Predicting GPCR Promiscuity Using Binding Site Features. J. Chem. Inf. Model. Anat Levit, Thijs Beuming, Goran Krilov, Woody Sherman, Masha Y. Niv
2014	J	`jnl`	Selecting an Optimal Number of Binding Site Waters To Improve Virtual Screening Enrichments Against the Adenosine A J. Chem. Inf. Model. Eelke B. Lenselink, Thijs Beuming, Woody Sherman, Herman W. T. van Vlijmen, Adriaan P. IJzerman
2013	J	`jnl`	Improved Docking of Polypeptides with Glide. J. Chem. Inf. Model. Ivan Tubert-Brohman, Woody Sherman, Matthew P. Repasky, Thijs Beuming
2013	J	`jnl`	Structure-Based Virtual Screening of MT J. Chem. Inf. Model. Daniele Pala, Thijs Beuming, Woody Sherman, Alessio Lodola, Silvia Rivara, Marco Mor
2012	J	`jnl`	Current Assessment of Docking into GPCR Crystal Structures and Homology Models: Successes, Challenges, and Guidelines. J. Chem. Inf. Model. Thijs Beuming, Woody Sherman
2010	C	`conf`	TRAC: A Platform for Structure-Function Studies of NSS-Proteins Integrates Information from Bioinformatics and Biomedical Literature. BIBE Lei Shi, Marko Srdanovic, Thijs Beuming, Lucy Skrabanek, Jonathan A. Javitch, Harel Weinstein
2005	J	`jnl`	PDZBase: a protein?Cprotein interaction database for PDZ-domains. Bioinform. Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, Harel Weinstein
2004	J	`jnl`	A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins. Bioinform. Thijs Beuming, Harel Weinstein