Theodore W. Berger

167 papers A 1B 19C 4Misc 4Journal 55Unranked 82

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. Frontiers Comput. Neurosci. Brent M. Roeder, Xiwei She, Alexander S. Dakos, Bryan Moore, Robert T. Wicks, Mark R. Witcher, Daniel E. Couture, Adrian W. Laxton, Heidi M. Munger Clary, Gautam Popli, Charles Liu, Brian Lee, Christianne Heck, George Nune, Hui Gong, Susan Shaw, Vasilis Z. Marmarelis, Theodore W. Berger, Sam A. Deadwyler, Dong Song, Robert E. Hampson
2022	J	`jnl`	A Double-Layer Multi-Resolution Classification Model for Decoding Spatiotemporal Patterns of Spikes With Small Sample Size. Neural Comput. Xiwei She, Theodore W. Berger, Dong Song
2021	J	`jnl`	Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. Frontiers Comput. Neurosci. Duy-Tan J. Pham, Gene J. Yu, Jean-Marie C. Bouteiller, Theodore W. Berger
2020	—	`conf`	A Computational Model of Mitochondria Motility in Axons. EMBC Jiaan Zhu, Jian Loong Lim Jethro, Bowen Li, Adam Mergenthal, Adnan A. Rayes, Hejun Tang, Theodore W. Berger, Jean-Marie C. Bouteiller
2020	J	`jnl`	A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. Frontiers Comput. Neurosci. Adam Mergenthal, Jean-Marie C. Bouteiller, Gene J. Yu, Theodore W. Berger
2020	—	`conf`	Accelerating Estimation of a Multi-Input Multi-Output Model of the Hippocampus with a Parallel Computing Strategy. EMBC Xiwei She, Brian S. Robinson, Theodore W. Berger, Dong Song
2020	J	`jnl`	Admittance Method for Estimating Local Field Potentials Generated in a Multi-Scale Neuron Model of the Hippocampus. Frontiers Comput. Neurosci. Clayton S. Bingham, Javad Paknahad, Christopher B. C. Girard, Kyle Loizos, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger
2020	J	`jnl`	Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. Frontiers Comput. Neurosci. Zane Z. Chou, Gene J. Yu, Theodore W. Berger
2020	J	`jnl`	ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling. Frontiers Comput. Neurosci. Clayton S. Bingham, Adam Mergenthal, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger
2020	J	`jnl`	Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. Frontiers Comput. Neurosci. Gene J. Yu, Jean-Marie C. Bouteiller, Theodore W. Berger
2020	—	`conf`	Validation of a Convolutional Neural Network Model for Spike Transformation Using a Generalized Linear Model. EMBC Bryan J. Moore, Theodore W. Berger, Dong Song
2019	J	`jnl`	Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. IEEE Trans. Biomed. Eng. Gene J. Yu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger
2019	J	`jnl`	Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. Neural Comput. Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Samuel A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis
2019	—	`conf`	Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. EMBC Gene J. Yu, Zhicheng Feng, Theodore W. Berger
2019	—	`conf`	Pathogenic Processes Underlying Alzheimer's Disease: Modeling the Effects of Amyloid Beta on Synaptic Transmission. EMBC Jean-Marie C. Bouteiller, Adam R. Mergenthal, Eric Y. Hu, Theodore W. Berger
2018	—	`conf`	A Closed-Loop Multi-Channel Asynchronous Neurostimulator to Mimic Neural Code for Cognitive Prosthesis. EMBC Sahar Elyahoodayan, Theodore W. Berger, Dong Song
2018	J	`jnl`	A Glutamatergic Spine Model to Enable Multi-Scale Modeling of Nonlinear Calcium Dynamics. Frontiers Comput. Neurosci. Eric Y. Hu, Adam Mergenthal, Clayton S. Bingham, Dong Song, Jean-Marie Bouteiller, Theodore W. Berger
2018	J	`jnl`	ASIC Implementation of a Nonlinear Dynamical Model for Hippocampal Prosthesis. Neural Comput. Zhitong Qiao, Yan Han, Xiaoxia Han, Han Xu, Will X. Y. Li, Dong Song, Theodore W. Berger, Ray C. C. Cheung
2018	—	`conf`	Application of Parylene-Based Flexible Multi-Electrode Array for Recording From Subcortical Brain Regions From Behaving Rats. EMBC Huijing Xu, Ahuva W. Hirschberg, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song
2018	—	`conf`	Cholinergic Modulation of CA1 Pyramidal Cells via M1 Muscarinic Receptor Activation: A Computational Study at Physiological and Supraphysiological Levels. EMBC Adam Mergenthal, Jean-Marie C. Bouteiller, Theodore W. Berger
2018	J	`jnl`	Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. Roman A. Sandler, Kunling Geng, Dong Song, Robert E. Hampson, Mark R. Witcher, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis
2018	—	`conf`	Graph-Based Models of Cortical Axons for the Prediction of Neuronal Response to Extracellular Electrical Stimulation. EMBC Clayton S. Bingham, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger
2018	J	`jnl`	Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis
2018	J	`jnl`	Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. IEEE Trans. Biomed. Eng. Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger
2018	—	`conf`	Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. EMBC Eric Y. Hu, Gene J. Yu, Dong Song, Jean-Marie C. Bouteiller, Theodore W. Berger
2018	—	`conf`	Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. EMBC Zane Z. Chou, Gene J. Yu, Theodore W. Berger
2017	C	`conf`	A 9-nW on-chip constant subthreshold CMOS transconductance bias with fine-tuning. ISCAS Uldric A. Antao, John Choma Ming Hsieh, Theodore W. Berger
2017	—	`conf`	Chronic multi-region recording from the rat hippocampus in vivo with a flexible Parylene-based multi-electrode array. EMBC Huijing Xu, Ahuva Weltman, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song
2017	—	`conf`	Multi-resolution multi-trial sparse classification model for decoding visual memories from hippocampal spikes in human. EMBC Dong Song, Xiwei She, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2016	J	`jnl`	A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics. IEEE Trans. Biomed. Eng. Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger
2016	—	`conf`	A bi-directional communication paradigm between parallel NEURON and an external non-neuron process. EMBC Phillip J. Hendrickson, Clayton S. Bingham, Dong Song, Theodore W. Berger
2016	—	`conf`	A flexible parylene probe for in vivo recordings from multiple subregions of the rat hippocampus. EMBC Huijing Xu, Ahuva Weltman, Min-Chi Hsiao, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song
2016	—	`conf`	A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. EMBC Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger
2016	—	`conf`	A sparse Laguerre-Volterra autoregressive model for seizure prediction in temporal lobe epilepsy. EMBC Pen-Ning Yu, Shokofeh A. Naiini, Christi N. Heck, Charles Yu Liu, Dong Song, Theodore W. Berger
2016	J	`jnl`	An FPGA-Based High-Performance Neural Ensemble Spiking Activity Simulator Utilizing Generalized Volterra Kernel and Complexity Analysis. J. Circuits Syst. Comput. Will X. Y. Li, Ray C. C. Cheung, Yao Xin, Dong Song, Theodore W. Berger
2016	—	`conf`	Decoding memory features from hippocampal spiking activities using sparse classification models. EMBC Dong Song, Robert E. Hampson, Brian S. Robinson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger
2016	—	`conf`	Development of a detailed model of calcium dynamics at the postsynaptic spine of an excitatory synapse. EMBC Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger
2016	J	`jnl`	Identification of Stable Spike-Timing-Dependent Plasticity from Spiking Activity with Generalized Multilinear Modeling. Neural Comput. Brian S. Robinson, Theodore W. Berger, Dong Song
2016	—	`conf`	Mismatch and temperature compensation for subthreshold seismic sensor system. LASCAS Uldric A. Antao, John Choma Jr., Alireza A. Dibazar, Theodore W. Berger
2016	—	`conf`	Monte Carlo validation of spike-timing-dependent plasticity identification from spiking activity. EMBC Brian S. Robinson, Theodore W. Berger, Dong Song
2016	—	`conf`	Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. EMBC Gene J. Yu, Dong Song, Theodore W. Berger
2015	—	`conf`	A 3-D admittance-level computational model of a rat hippocampus for improving prosthetic design. EMBC Andrew Gilbert, Kyle Loizos, Anil Kumar RamRakhyani, Phillip J. Hendrickson, Gianluca Lazzi, Theodore W. Berger
2015	—	`conf`	A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. EMBC Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger
2015	J	`jnl`	An Application Specific Instruction Set Processor (ASIP) for Adaptive Filters in Neural Prosthetics. IEEE ACM Trans. Comput. Biol. Bioinform. Yao Xin, Will X. Y. Li, Zhaorui Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger
2015	—	`conf`	Design of a flexible parylene-based multi-electrode array for multi-region recording from the rat hippocampus. EMBC Huijing Xu, Ahuva Weltman, Min-Chi Hsiao, Kee Scholten, Ellis Meng, Theodore W. Berger, Dong Song
2015	—	`conf`	Estimation of a large-scale generalized Volterra model for neural ensembles with group lasso and local coordinate descent. EMBC Brian S. Robinson, Dong Song, Theodore W. Berger
2015	—	`conf`	Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization. NER Jean-Marie C. Bouteiller, Zhuobo Feng, Alexander Onopa, Mike Huang, Eric Y. Hu, Endre T. Somogyi, Michel Baudry, Serge Bischoff, Theodore W. Berger
2015	J	`jnl`	Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J. Comput. Neurosci. Roman A. Sandler, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis
2015	J	`jnl`	Nonlinear Cognitive Signal Processing in Ultralow-Power Programmable Analog Hardware. IEEE Trans. Circuits Syst. II Express Briefs Viviane S. Ghaderi, Dong Song, John Choma Jr., Theodore W. Berger
2015	—	`conf`	Nonlinear dynamical modeling of human hippocampal CA3-CA1 functional connectivity for memory prostheses. NER Dong Song, Robert E. Hampson, Brian S. Robinson, Ioan Opris, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger
2015	—	`conf`	Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. EMBC Dong Song, Brian S. Robinson, Robert E. Hampson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger
2015	—	`conf`	The volterra functional series is a viable alternative to kinetic models for synaptic modeling -calibration and benchmarking. EMBC Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger
2015	—	`conf`	Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. EMBC Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger
2015	J	`jnl`	Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations. Frontiers Comput. Neurosci. Eric Y. Hu, Jean-Marie C. Bouteiller, Dong Song, Michel Baudry, Theodore W. Berger
2014	—	`conf`	A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: A computational study. EMBC Eric Y. Hu, Jean-Marie C. Bouteiller, Mike Huang, Dong Song, Theodore W. Berger
2014	—	`conf`	A testbed to explore the optimal electrical stimulation parameters for suppressing inter-ictal spikes in human hippocampal slices. EMBC Min-Chi Hsiao, Pen-Ning Yu, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger
2014	J	`jnl`	An FPGA based scalable architecture of a stochastic state point process filter (SSPPF) to track the nonlinear dynamics underlying neural spiking. Microelectron. J. Yao Xin, Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Hong Yan, Dong Song, Theodore W. Berger
2014	—	`conf`	Generalized volterra kernel model identification of spike-timing-dependent plasticity from simulated spiking activity. EMBC Brian S. Robinson, Dong Song, Theodore W. Berger
2014	—	`ch.`	Hippocampal Memory Prosthesis. Encyclopedia of Computational Neuroscience Dong Song, Theodore W. Berger
2014	—	`conf`	Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. EMBC Gene J. Yu, Dong Song, Theodore W. Berger
2014	—	`conf`	Implementing spiking neuron model and spike-timing-dependent plasticity with generalized Laguerre-Volterra models. EMBC Dong Song, Brian S. Robinson, John J. Granacki, Theodore W. Berger
2014	—	`conf`	Laguerre-volterra model and architecture for MIMO system identification and output prediction. EMBC Will X. Y. Li, Yao Xin, Rosa H. M. Chan, Dong Song, Theodore W. Berger, Ray C. C. Cheung
2014	B	`conf`	Large scale parameter estimation for nonlinear dynamic systems: Application on spike-in, spike-out neural models. IJCNN Alireza A. Dibazar, A. H. Yousefi, Theodore W. Berger
2014	J	`jnl`	On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J. Comput. Neurosci. Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2014	—	`conf`	Recording place cells from multiple sub-regions of the rat hippocampus with a customized micro-electrode array. EMBC Huijing Xu, Min-Chi Hsiao, Dong Song, Theodore W. Berger
2014	J	`jnl`	Synaptic dynamics: Linear model and adaptation algorithm. Neural Networks Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger
2014	—	`ch.`	Tripartite Synapse (Neuron-Astrocyte Interactions), Conductance Models. Encyclopedia of Computational Neuroscience Theodore W. Berger
2014	—	`conf`	Unstable periodic orbits in human epileptic hippocampal slices. EMBC Pen-Ning Yu, Min-Chi Hsiao, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger
2014	—	`conf`	VLSI architecture of a high-performance neural spiking activity simulator based on generalized Volterra kernel. ISIC Will X. Y. Li, Yao Xin, Dong Song, Theodore W. Berger, Ray C. C. Cheung
2013	—	`conf`	A programmable analog subthreshold biomimetic model for bi-directional communication with the brain. EMBC Viviane S. Ghaderi, Dong Song, Jean-Marie C. Bouteiller, John Choma Jr., Theodore W. Berger
2013	C	`conf`	A reconfigurable architecture for real-time prediction of neural activity. ISCAS Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Dong Song, Theodore W. Berger
2013	—	`conf`	Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. EMBC Robert E. Hampson, Joshua L. Fuqua, Peter F. Huettl, Ioan Opris, Dong Song, Dae C. Shin, Vasilis Z. Marmarelis, Theodore W. Berger, Greg A. Gerhardt, Sam A. Deadwyler
2013	J	`jnl`	Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J. Comput. Neurosci. Dong Song, Haonan Wang, Catherine Y. Tu, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2013	—	`conf`	Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol. EMBC Jean-Marie C. Bouteiller, Sushmita L. Allam, Nicolas Ambert, Renaud Greget, Eric Y. Hu, Serge Bischoff, Michel Baudry, Theodore W. Berger
2013	—	`conf`	Insights on synaptic paired-pulse response using parametric and non-parametric models. EMBC Jean-Marie C. Bouteiller, Eric Y. Hu, Sushmita L. Allam, Viviane S. Ghaderi, Dong Song, Theodore W. Berger
2013	—	`conf`	Laguerre-volterra identification of spike-timing-dependent plasticity from spiking activity: A simulation study. EMBC Brian S. Robinson, Dong Song, Theodore W. Berger
2013	J	`jnl`	Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J. Comput. Neurosci. Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2013	J	`jnl`	Real-Time Prediction of Neuronal Population Spiking Activity Using FPGA. IEEE Trans. Biomed. Circuits Syst. Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Dong Song, Theodore W. Berger
2013	—	`conf`	The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. EMBC Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger
2013	—	`conf`	The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. EMBC Gene J. Yu, Phillip J. Hendrickson, Brian S. Robinson, Dong Song, Theodore W. Berger
2012	J	`jnl`	A Computational Model to Investigate Astrocytic Glutamate Uptake Influence on Synaptic Transmission and Neuronal Spiking. Frontiers Comput. Neurosci. Sushmita L. Allam, Viviane S. Ghaderi, Jean-Marie Bouteiller, Arnaud Legendre, Nicolas Ambert, Renaud Greget, Serge Bischoff, Michel Baudry, Theodore W. Berger
2012	—	`conf`	A dual mode FPGA design for the hippocampal prosthesis. EMBC Will X. Y. Li, Rosa H. M. Chan, Dong Song, Theodore W. Berger, Ray C. C. Cheung
2012	—	`conf`	An analysis of the expression locus of long-term potentiation in hippocampal CA1 neurons. EMBC Shane M. Roach, Ude Lu, Dong Song, Theodore W. Berger
2012	—	`conf`	Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. EMBC Viviane S. Ghaderi, Shane M. Roach, Dong Song, Vasilis Z. Marmarelis, John Choma Jr., Theodore W. Berger
2012	J	`jnl`	Columnar Processing in Primate pFC: Evidence for Executive Control Microcircuits. J. Cogn. Neurosci. Ioan Opris, Robert E. Hampson, Greg A. Gerhardt, Theodore W. Berger, Sam A. Deadwyler
2012	—	`conf`	Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. EMBC Dong Song, Ioan Opris, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2012	—	`conf`	Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. EMBC Brian S. Robinson, Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger
2012	—	`conf`	Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. EMBC Gene J. Yu, Brian S. Robinson, Phillip J. Hendrickson, Dong Song, Theodore W. Berger
2012	—	`conf`	Influence of ionotropic receptor location on their dynamics at glutamatergic synapses. EMBC Sushmita L. Allam, Jean-Marie C. Bouteiller, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Serge Bischoff, Michel Baudry, Theodore W. Berger
2012	—	`conf`	Modeling of the nervous system: From modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity. EMBC Jean-Marie C. Bouteiller, Arnaud Legendre, Sushmita L. Allam, Nicolas Ambert, Eric Y. Hu, Renaud Greget, Anne Florence Keller, Fabien Pernot, Serge Bischoff, Michel Baudry, Theodore W. Berger
2012	J	`jnl`	Nonlinear Dynamic Modeling of Neuron Action Potential Threshold During Synaptically Driven Broadband Intracellular Activity. IEEE Trans. Biomed. Eng. Ude Lu, Shane M. Roach, Dong Song, Theodore W. Berger
2012	—	`conf`	Nonlinear model for Dynamic Synapse Neural Network. EMBC Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger
2012	—	`conf`	Spatio-temporal inter-ictal activity recorded from human epileptic hippocampal slices. EMBC Min-Chi Hsiao, Pen-Ning Yu, Dong Song, Charles Yu Liu, Christi N. Heck, David E. Millett, Theodore W. Berger
2012	—	`conf`	Synaptic dynamics: Linear model and adaptation algorithm. EMBC Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger
2012	—	`conf`	Towards a large-scale biologically realistic model of the hippocampus. EMBC Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger
2011	—	`conf`	A hardware-based computational platform for Generalized Laguerre-Volterra MIMO model for neural activities. EMBC Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger
2011	—	`conf`	A two-stage cascade nonlinear dynamical model of single neurons for the separation and quantification of pre- and post-synaptic mechanisms of synaptic transmission. EMBC Ude Lu, Shane M. Roach, Dong Song, Theodore W. Berger
2011	B	`conf`	Discrete Synapse Recurrent Neural Network with time-varying delays for nonlinear system modeling and its application on seismic signal classification. IJCNN Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger
2011	—	`conf`	Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. EMBC Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2011	—	`conf`	Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. EMBC Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2011	B	`conf`	FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Activities. FPL Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, C. W. Yu, Ray C. C. Cheung, Dong Song, Theodore W. Berger
2011	Misc	`conf`	FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Spiking Activities. FCCM Will X. Y. Li, Ray C. C. Cheung, Wei Zhang, Rosa H. M. Chan, Dong Song, Theodore W. Berger
2011	J	`jnl`	High-Performance and Scalable System Architecture for the Real-Time Estimation of Generalized Laguerre-Volterra MIMO Model From Neural Population Spiking Activity. IEEE J. Emerg. Sel. Topics Circuits Syst. Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger
2011	J	`jnl`	Integrated Multiscale Modeling of the Nervous System: Predicting Changes in Hippocampal Network Activity by a Positive AMPA Receptor Modulator. IEEE Trans. Biomed. Eng. Jean-Marie Bouteiller, Sushmita L. Allam, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Anne Florence Keller, Serge Bischoff, Michel Baudry, Theodore W. Berger
2011	—	`conf`	Modeling neuron-glia interactions: From parametric model to neuromorphic hardware. EMBC Viviane S. Ghaderi, Sushmita L. Allam, Nicolas Ambert, Jean-Marie C. Bouteiller, John Choma Jr., Theodore W. Berger
2011	—	`conf`	Modeling of the nervous system: From molecular dynamics and synaptic modulation to neuron spiking activity. EMBC Jean-Marie C. Bouteiller, Sushmita L. Allam, Eric Y. Hu, Renaud Greget, Nicolas Ambert, Anne Florence Keller, Fabien Pernot, Serge Bischoff, Michel Baudry, Theodore W. Berger
2011	J	`jnl`	Nonlinear Dynamic Modeling of Synaptically Driven Single Hippocampal Neuron Intracellular Activity. IEEE Trans. Biomed. Eng. Ude Lu, Dong Song, Theodore W. Berger
2011	—	`conf`	Restorative encoding memory integrative neural device: "REMIND". EMBC Robert E. Hampson, Vasilis Z. Marmarelis, Dae C. Shin, Greg A. Gerhardt, Dong Song, Rosa H. M. Chan, A. J. Sweatt, John J. Granacki, Theodore W. Berger, Sam A. Deadwyler
2011	B	`conf`	Supervised learning in a single layer Dynamic Synapses Neural Network. IJCNN Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger
2011	—	`conf`	Tracking the changes of hippocampal population nonlinear dynamics in rats learning a memory-dependent task. EMBC Rosa H. M. Chan, Dong Song, Anushka V. Goonawardena, Sarah Bough, John Sesay, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2010	Misc	`conf`	Design of a helmet-mounted microphone array for sound localization. ICASSP Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger
2010	B	`conf`	Discrete Synapse Recurrent Neural Network for nonlinear system modeling and its application on seismic signal classification. IJCNN Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger
2010	J	`jnl`	Noise-robust acoustic signature recognition using nonlinear Hebbian learning. Neural Networks Bing Lu, Alireza A. Dibazar, Theodore W. Berger
2010	J	`jnl`	Signal Processing for Neural Spike Trains. Comput. Intell. Neurosci. Theodore W. Berger, Zhe (Sage) Chen, Andrzej Cichocki, Karim G. Oweiss, Rodrigo Quian Quiroga, Nitish V. Thakor
2010	B	`conf`	Statistical spiking model for real world pattern recognition applications. IJCNN Alireza A. Dibazar, Sageev T. George, Theodore W. Berger
2010	Misc	`conf`	The Application of Non-Homogenous HMM on the Detection of Security Fence Breaches. ICASSP Ali Yousefi, Alireza A. Dibazar, Theodore W. Berger
2010	J	`jnl`	The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling. Proc. IEEE Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis
2009	Misc	`conf`	Cadence analysis of temporal gait patterns for seismic discrimination between human and quadruped footsteps. ICASSP Hyung-Ook Park, Alireza A. Dibazar, Theodore W. Berger
2009	—	`conf`	Multi-Input, Multi-Output Nonlinear Dynamic Modeling to Identify Biologically-Based Transformations as the "Cognitive Processes" Represented by the Ensemble Coding of Neuron Populations. AAAI Fall Symposium: Biologically Inspired Cognitive Architectures Theodore W. Berger, Dong Song, Vasilis Z. Marmarelis
2009	J	`jnl`	Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Networks Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2009	J	`jnl`	Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study. J. Comput. Neurosci. Dong Song, Vasilis Z. Marmarelis, Theodore W. Berger
2009	J	`jnl`	Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. J. Comput. Neurosci. Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger
2008	A	`conf`	Implantable biomimetic electronics as neural prostheses for lost memory function. IUI Theodore W. Berger
2008	J	`jnl`	Modeling the Nonlinear Properties of the IEEE Trans. Biomed. Eng. Angelika Dimoka, Spiros H. Courellis, Ghassan I. Gholmieh, Vasilis Z. Marmarelis, Theodore W. Berger
2008	B	`conf`	Nonlinear Hebbian Learning for noise-independent vehicle sound recognition. IJCNN Bing Lu, Alireza A. Dibazar, Theodore W. Berger
2007	B	`conf`	Asymmetric Synaptic Plasticity Based on Arbitrary Pre- and Postsynaptic Timing Spikes Using Finite State Model. IJCNN Bing Lu, Walter M. Yamada, Theodore W. Berger
2007	J	`jnl`	Neuronal Network Morphology and Electrophysiologyof Hippocampal Neurons Cultured on Surface-Treated Multielectrode Arrays. IEEE Trans. Biomed. Eng. Walid V. Soussou, Geoffrey J. Yoon, Roberta Diaz Brinton, Theodore W. Berger
2007	J	`jnl`	Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses. IEEE Trans. Biomed. Eng. Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2007	B	`conf`	The Application of Dynamic Synapse Neural Networks on Footstep and Vehicle Recognition. IJCNN Alireza A. Dibazar, Hyung-Ook Park, Theodore W. Berger
2006	—	`conf`	A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. EMBC Theodoros P. Zanos, Spiros H. Courellis, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger
2006	—	`conf`	Boolean Modeling of Neural Systems with Point-Process Inputs and Outputs. EMBC Vasilis Z. Marmarelis, Theodoros P. Zanos, Spiros H. Courellis, Theodore W. Berger
2006	—	`conf`	EONS: An Online Synaptic Modeling Platform. EMBC Jean-Marie C. Bouteiller, Yumei Qiu, Mohammed B. Ziane, Michel Baudry, Theodore W. Berger
2006	B	`conf`	Hardware Implementation of Dynamic Synapse Neural Networks for Acoustic Sound Recognition. IJCNN Alireza A. Dibazar, Abhijith Bangalore, Hyung-Ook Park, Sageev T. George, Walter M. Yamada, Theodore W. Berger
2006	—	`conf`	Interaction of Short-Term Neuronal Plasticity and Synaptic Plasticity Revealed by Nonlinear Systems Analysis in Dentate Granule Cells. EMBC Xiaping Xie, Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger
2006	—	`conf`	Modeling Hippocampal Nonlinear Dynamic Transformations with Principal Dynamic Modes. EMBC Spiros H. Courellis, Theodoros P. Zanos, Min-Chi Hsiao, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger
2006	—	`conf`	Modeling the Nonlinear Dynamic Interactions of the Lateral and the Medial Perforant Path of the Hippocampal Dentate Gyrus. EMBC Angelika Dimoka, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger
2006	—	`conf`	Nonlinear Dynamic Neural Network for Text-Independent Speaker Identification using Information Theoretic Learning Technology. EMBC Bing Lu, Walter M. Yamada, Theodore W. Berger
2006	B	`conf`	Nonlinear Queuing Model for Dynamic Synapse with Multiple Transmitter Pools. IJCNN Bing Lu, Walter M. Yamada, Theodore W. Berger
2006	—	`conf`	Pathological Voice Assessment. EMBC Alireza A. Dibazar, Theodore W. Berger, Shrikanth S. Narayanan
2006	—	`conf`	Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation. EMBC Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger
2006	—	`conf`	VLSI Implementation of a Nonlinear Neuronal Model: A "Neural Prosthesis" to Restore Hippocampal Trisynaptic Dynamics. EMBC Min-Chi Hsiao, Chiu-Hsien Chan, Vijay Srinivasan, Ashish Ahuja, Gopal Erinjippurath, Theodoros P. Zanos, Ghassan I. Gholmieh, Dong Song, Jack Wills, Jeff LaCoss, Spiros H. Courellis, Armand R. Tanguay, John J. Granacki, Vasilis Z. Marmarelis, Theodore W. Berger
2005	J	`jnl`	Detecting CA1 short-term plasticity variations associated with changes in stimulus intensity and extracellular medium composition. Neurocomputing Ghassan I. Gholmieh, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger
2005	B	`conf`	Implantable biomimetic electronics as neural prostheses for lost cognitive function. IJCNN Theodore W. Berger, John J. Granacki, Vasilis Z. Marmarelis, Armand R. Tanguay Jr., Sam A. Deadwyler, Greg A. Gerhardt
2004	B	`conf`	Implantable biomimetic microelectronics for the replacement of hippocampal memory function lost due to damage or disease. IJCNN Theodore W. Berger
2004	B	`conf`	Modeling nonlinear neural dynamics with Volterra-Poisson kernels. IJCNN Spiros H. Courellis, Ghassan I. Gholmieh, Vasilis Z. Marmarelis, Theodore W. Berger
2004	B	`conf`	Speech recognition based on fundamental functional principles of the brain. IJCNN Alireza A. Dibazar, Dong Song, Walter M. Yamada, Theodore W. Berger
2003	B	`conf`	A new approach for isolated word recognition using dynamic synapse neural networks. IJCNN Alireza A. Dibazar, Hassan H. Narnarvar, Theodore W. Berger
2003	J	`jnl`	An efficient training algorithm for dynamic synapse neural networks using trust region methods. Neural Networks Hassan H. Namarvar, Theodore W. Berger
2003	B	`conf`	Robust command recognition using kernel learning algorithms. IJCNN Hassan H. Narnarvar, Theodore W. Berger
2003	B	`conf`	Trust region nonlinear optimization learning method for dynamic synapse neural networks. IJCNN Hassan H. Narnarvar, Theodore W. Berger
2003	B	`conf`	Using dynamic synapse based neural networks with wavelet preprocessing for speech applications. IJCNN Sageev T. George, Alireza A. Dibazar, Vishal Desai, Theodore W. Berger
2001	J	`jnl`	Brain-implantable biomimetic electronics as the next era in neural prosthetics. Proc. IEEE Theodore W. Berger, Michel Baudry, Roberta Diaz Brinton, Jim-Shih Liaw, Vasilis Z. Marmarelis, Alex Yoondong Park, Bing J. Sheu, Armand R. Tanguay
2000	J	`jnl`	A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. Neural Networks Konstantinos Alataris, Theodore W. Berger, Vasilis Z. Marmarelis
2000	J	`jnl`	Building Replacement Parts for the Brain: A New Era in Neural Prothetcis, SIGMOD Conference 1999, Keynote Speech, Video ACM SIGMOD Digit. Symp. Collect. Theodore W. Berger
2000	—	`conf`	Compact VLSI Neural Network Circuit with High-Capacity Dynamic Synapses. IJCNN (4) Alex Yoondong Park, Jim-Shih Liaw, Theodore W. Berger, Bing J. Sheu
1999	J	`jnl`	A protocol-based simulation for linking computational and experimental studies. Neurocomputing Ying Shu, Xiaping Xie, Jim-Shih Liaw, Theodore W. Berger
1999	J	`jnl`	Consequence of morphological alterations on synaptic function. Neurocomputing Taraneh Ghaffari-Farazi, Jim-Shih Liaw, Theodore W. Berger
1999	J	`jnl`	Decomposition of neural systems with nonlinear feedback using stimulus-response data. Neurocomputing Martin T. Chian, Vasilis Z. Marmarelis, Theodore W. Berger
1999	J	`jnl`	Dynamic synapse: Harnessing the computing power of synaptic dynamics. Neurocomputing Jim-Shih Liaw, Theodore W. Berger
1999	J	`jnl`	Modeling of nonlinear nonstationary dynamic systems with a novel class of artificial neural networks. IEEE Trans. Neural Networks M. Iatrou, Theodore W. Berger, Vasilis Z. Marmarelis
1997	—	`conf`	Computing with dynamic synapses: a case study of speech recognition. ICNN Jim-Shih Liaw, Theodore W. Berger
1996	C	`conf`	A Compact Neural Network Based CDMA Receiver for Multimedia Wireless Communication. ICCD David C. Chen, Bing J. Sheu, Theodore W. Berger
1996	—	`conf`	VLSI design for real-time signal processing based on biologically realistic neural models. ICNN Richard H. Tsai, Bing J. Sheu, Theodore W. Berger
1995	—	`conf`	A hippocampal model implementation using VLSI table-look-up and model-based approaches. ICNN Richard H. Tsai, Eric Y. Chou, Bing J. Sheu, Theodore W. Berger
1995	C	`conf`	VLSI Neural Network Implementation of a Hippocampal Model. ISCAS Bing J. Sheu, Theodore W. Berger, Tony H. Wu, Richard H. Tsai
1994	J	`jnl`	A biologically based model of functional properties of the hippocampus. Neural Networks Theodore W. Berger, Gilbert A. Chauvet, Robert J. Sclabassi
1992	J	`jnl`	Instantaneous characterization of time varying nonlinear systems (neurophysiological responses). IEEE Trans. Biomed. Eng. Don N. Krieger, Theodore W. Berger, Robert J. Sclabassi