Thanasis Vergoulis

75 papers A* 2A 1B 17Journal 36Unranked 16
YearRankTypeTitle / Venue / Authors
2025 B conf
A Virtual Laboratory for Managing Computational Experiments.
SSDBM
Eleni S. Adamidi, Panayiotis Deligiannis, Nikos Foutris, Thanasis Vergoulis
2025 J jnl
A Virtual Laboratory for Managing Computational Experiments.
CoRR
Eleni S. Adamidi, Panayiotis Deligiannis, Nikos Foutris, Thanasis Vergoulis
2025 J jnl
Accelerating Scientific Discovery with Multi-Document Summarization of Impact-Ranked Papers.
CoRR
Paris Koloveas, Serafeim Chatzopoulos, Dionysis Diamantis, Christos Tryfonopoulos, Thanasis Vergoulis
2025 B conf
Can LLMs Predict Citation Intent? An Experimental Analysis of In-Context Learning and Fine-Tuning on Open LLMs.
TPDL
Paris Koloveas, Serafeim Chatzopoulos, Thanasis Vergoulis, Christos Tryfonopoulos
2025 J jnl
Can LLMs Predict Citation Intent? An Experimental Analysis of In-context Learning and Fine-tuning on Open LLMs.
CoRR
Paris Koloveas, Serafeim Chatzopoulos, Thanasis Vergoulis, Christos Tryfonopoulos
2025 B conf
From Raw Affiliations to Organization Identifiers.
TPDL
Myrto Kallipoliti, Serafeim Chatzopoulos, Miriam Baglioni, Eleni S. Adamidi, Paris Koloveas, Thanasis Vergoulis
2025 J jnl
From raw affiliations to organization identifiers.
CoRR
Myrto Kallipoliti, Serafeim Chatzopoulos, Miriam Baglioni, Eleni S. Adamidi, Paris Koloveas, Thanasis Vergoulis
2025 — conf
GraspOS Infrastructure: Enhancing Discoverability of Open Resources for Responsible Research Assessment.
WOOC
Thanasis Vergoulis, Clifford Tatum
2025 B conf
InsightGUIDE: An Opinionated AI Assistant for Guided Critical Reading of Scientific Literature.
ICTAI
Paris Koloveas, Serafeim Chatzopoulos, Thanasis Vergoulis, Christos Tryfonopoulos
2025 J jnl
InsightGUIDE: An Opinionated AI Assistant for Guided Critical Reading of Scientific Literature.
CoRR
Paris Koloveas, Serafeim Chatzopoulos, Thanasis Vergoulis, Christos Tryfonopoulos
2025 J jnl
Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences.
CoRR
Gavin Farrell, Eleni S. Adamidi, Rafael Andrade Buono, Mihail Anton, Omar Abdelghani Attafi, Salvador Capella-Gutiérrez, Emidio Capriotti, Leyla Jael Castro, Davide Cirillo, Lisa C. Crossman, Christophe Dessimoz, Alexandros C. Dimopoulos, Raúl Fernández-Díaz, Styliani-Christina Fragkouli, Carole A. Goble, Wei Gu, John M. Hancock, Alireza Khanteymoori, Tom Lenaerts, Fabio G. Liberante, Peter Maccallum, Alexander Miguel Monzon, Magnus Palmblad, Lucy Poveda, Ovidiu Radulescu, Denis C. Shields, Shoaib Sufi, Thanasis Vergoulis, Fotis E. Psomopoulos, Silvio C. E. Tosatto
2023 — conf
3rd International Workshop on Scientific Knowledge Representation, Discovery, and Assessment (Sci-K 2023).
WWW (Companion Volume)
Angelo Antonio Salatino, Yi Bu, Ying Ding, Ágnes Horvát, Yong Huang, Meijun Liu, Paolo Manghi, Andrea Mannocci, Francesco Osborne, Daniel M. Romero, Dimitris Sacharidis, Misha Teplitskiy, Thanasis Vergoulis, Feng Xia, Yujia Zhai
2023 A* conf
Atrapos: Real-time Evaluation of Metapath Query Workloads.
WWW
Serafeim Chatzopoulos, Thanasis Vergoulis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos, Panagiotis Karras
2023 J jnl
BIP! NDR (NoDoiRefs): A Dataset of Citations From Papers Without DOIs in Computer Science Conferences and Workshops.
CoRR
Paris Koloveas, Serafeim Chatzopoulos, Christos Tryfonopoulos, Thanasis Vergoulis
2023 B conf
BIP! NDR (NoDoiRefs): A Dataset of Citations from Papers Without DOIs in Computer Science Conferences and Workshops.
TPDL
Paris Koloveas, Serafeim Chatzopoulos, Christos Tryfonopoulos, Thanasis Vergoulis
2023 — conf
Piloting Topic-Aware Research Impact Assessment Features in BIP! Services.
ESWC (Satellite Events)
Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Thanasis Vergoulis
2023 J jnl
Piloting topic-aware research impact assessment features in BIP! Services.
CoRR
Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Thanasis Vergoulis
2022 — conf
A Preliminary Assessment of the Article Deduplication Algorithm Used for the OpenAIRE Research Graph.
IRCDL
Kleanthis Vichos, Michele De Bonis, Ilias Kanellos, Serafeim Chatzopoulos, Claudio Atzori, Natalia Manola, Paolo Manghi, Thanasis Vergoulis
2022 J jnl
ATRAPOS: Evaluating Metapath Query Workloads in Real Time.
CoRR
Serafeim Chatzopoulos, Thanasis Vergoulis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos, Panagiotis Karras
2022 — conf
Accepted Tutorials at The Web Conference 2022.
WWW (Companion Volume)
Riccardo Tommasini, Senjuti Basu Roy, Xuan Wang, Hongwei Wang, Heng Ji, Jiawei Han, Preslav Nakov, Giovanni Da San Martino, Firoj Alam, Markus Schedl, Elisabeth Lex, Akash Bharadwaj, Graham Cormode, Milan Dojchinovski, Jan Forberg, Johannes Frey, Pieter Bonte, Marco Balduini, Matteo Belcao, Emanuele Della Valle, Junliang Yu, Hongzhi Yin, Tong Chen, Haochen Liu, Yiqi Wang, Wenqi Fan, Xiaorui Liu, Jamell Dacon, Lingjuan Lyu, Jiliang Tang, Aristides Gionis, Stefan Neumann, Bruno Ordozgoiti, Simon Razniewski, Hiba Arnaout, Shrestha Ghosh, Fabian M. Suchanek, Lingfei Wu, Yu Chen, Yunyao Li, Bang Liu, Filip Ilievski, Daniel Garijo, Hans Chalupsky, Pedro A. Szekely, Ilias Kanellos, Dimitris Sacharidis, Thanasis Vergoulis, Nurendra Choudhary, Nikhil Rao, Karthik Subbian, Srinivasan H. Sengamedu, Chandan K. Reddy, Friedhelm Victor, Bernhard Haslhofer, George Katsogiannis-Meimarakis, Georgia Koutrika, Shengmin Jin, Danai Koutra, Reza Zafarani, Yulia Tsvetkov, Vidhisha Balachandran, Sachin Kumar, Xiangyu Zhao, Bo Chen, Huifeng Guo, Yejing Wang, Ruiming Tang, Yang Zhang, Wenjie Wang, Peng Wu, Fuli Feng, Xiangnan He
2022 J jnl
BIP! Scholar: A Service to Facilitate Fair Researcher Assessment.
CoRR
Thanasis Vergoulis, Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Andrea Mannocci, Natalia Manola, Paolo Manghi
2022 — conf
BIP! scholar: a service to facilitate fair researcher assessment.
JCDL
Thanasis Vergoulis, Serafeim Chatzopoulos, Kleanthis Vichos, Ilias Kanellos, Andrea Mannocci, Natalia Manola, Paolo Manghi
2022 — conf
Sci-K 2022 - International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment.
WWW (Companion Volume)
Paolo Manghi, Andrea Mannocci, Francesco Osborne, Dimitris Sacharidis, Angelo A. Salatino, Thanasis Vergoulis
2022 B conf
SurvAnnT: Facilitating Community-Led Scientific Surveys and Annotations.
TPDL
Anargiros Tzerefos, Ilias Kanellos, Serafeim Chatzopoulos, Theodore Dalamagas, Thanasis Vergoulis
2022 J jnl
VeTo+: improved expert set expansion in academia.
Int. J. Digit. Libr.
Serafeim Chatzopoulos, Thanasis Vergoulis, Theodore Dalamagas, Christos Tryfonopoulos
2021 — conf
A Cloud-Native NGS Data Processing and Annotation Platform.
Poly/DMAH@VLDB
Giannis Mouchakis, Babis Kostopoulos, Stasinos Konstantopoulos, Ilias Kanellos, Anargiros Tzerefos, Thanasis Vergoulis, Thodoris Dalamagas
2021 — conf
BIP! DB: A Dataset of Impact Measures for Scientific Publications.
WWW (Companion Volume)
Thanasis Vergoulis, Ilias Kanellos, Claudio Atzori, Andrea Mannocci, Serafeim Chatzopoulos, Sandro La Bruzzo, Natalia Manola, Paolo Manghi
2021 J jnl
BIP! DB: A Dataset of Impact Measures for Scientific Publications.
CoRR
Thanasis Vergoulis, Ilias Kanellos, Claudio Atzori, Andrea Mannocci, Serafeim Chatzopoulos, Sandro La Bruzzo, Natalia Manola, Paolo Manghi
2021 J jnl
BIP4COVID19: Releasing impact measures for articles relevant to COVID-19.
Quant. Sci. Stud.
Thanasis Vergoulis, Ilias Kanellos, Serafeim Chatzopoulos, Danae Pla Karidi, Theodore Dalamagas
2021 J jnl
Further improvements on estimating the popularity of recently published papers.
Quant. Sci. Stud.
Serafeim Chatzopoulos, Thanasis Vergoulis, Ilias Kanellos, Theodore Dalamagas, Christos Tryfonopoulos
2021 J jnl
Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation.
IEEE Trans. Knowl. Data Eng.
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou
2021 J jnl
New trends in scientific knowledge graphs and research impact assessment.
Quant. Sci. Stud.
Paolo Manghi, Andrea Mannocci, Francesco Osborne, Dimitris Sacharidis, Angelo A. Salatino, Thanasis Vergoulis
2021 — book
Predicting the Dynamics of Research Impact
Yannis Manolopoulos, Thanasis Vergoulis
2021 — ch.
Ranking Papers by Expected Short-Term Impact.
Predicting the Dynamics of Research Impact
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis
2021 A* conf
Ranking Papers by their Short-Term Scientific Impact.
ICDE
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou
2021 B conf
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines.
SSDBM
Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas
2021 J jnl
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines.
CoRR
Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas
2021 B conf
SciNeM: A Scalable Data Science Tool for Heterogeneous Network Mining.
EDBT
Serafeim Chatzopoulos, Thanasis Vergoulis, Panagiotis Deligiannis, Dimitrios Skoutas, Theodore Dalamagas, Christos Tryfonopoulos
2021 — conf
Simplifying Impact Prediction for Scientific Articles.
EDBT/ICDT Workshops
Thanasis Vergoulis, Ilias Kanellos, Giorgos Giannopoulos, Theodore Dalamagas
2021 — conf
Simplifying p-value calculation for the unbiased microRNAenrichment analysis, using ML-techniques.
EDBT/ICDT Workshops
Konstantinos Zagganas, Maria Lioli, Thanasis Vergoulis, Theodore Dalamagas
2021 — conf
VeTo-web: A Recommendation Tool for the Expansion of Sets of Scholars.
JCDL
Serafeim Chatzopoulos, Thanasis Vergoulis, Theodore Dalamagas, Christos Tryfonopoulos
2021 — conf
Visualising Scientific Topic Evolution.
WWW (Companion Volume)
Panagiotis Deligiannis, Thanasis Vergoulis, Serafeim Chatzopoulos, Christos Tryfonopoulos
2020 — conf
ArtSim: Improved Estimation of Current Impact for Recent Articles.
ADBIS/TPDL/EDA Workshops
Serafeim Chatzopoulos, Thanasis Vergoulis, Ilias Kanellos, Theodore Dalamagas, Christos Tryfonopoulos
2020 — conf
Databases and Information Systems in the AI Era: Contributions from ADBIS, TPDL and EDA 2020 Workshops and Doctoral Consortium.
ADBIS/TPDL/EDA Workshops
Ladjel Bellatreche, Fadila Bentayeb, Mária Bieliková, Omar Boussaid, Barbara Catania, Paolo Ceravolo, Elena Demidova, Mírian Halfeld Ferrari, María Teresa Gómez-López, Carmem S. Hara, Slavica Kordic, Ivan Lukovic, Andrea Mannocci, Paolo Manghi, Francesco Osborne, Christos Papatheodorou, Sonja Ristic, Dimitris Sacharidis, Oscar Romero, Angelo A. Salatino, Guilaine Talens, Maurice van Keulen, Thanasis Vergoulis, Maja Zumer
2020 B conf
Efficient Calculation of Empirical P-values for Association Testing of Binary Classifications.
SSDBM
Konstantinos Zagganas, Thanasis Vergoulis, Spiros Skiadopoulos, Theodore Dalamagas
2020 J jnl
Ranking Papers by their Short-Term Scientific Impact.
CoRR
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Yannis Vassiliou
2020 J jnl
SPHINX: A System for Metapath-based Entity Exploration in Heterogeneous Information Networks.
Proc. VLDB Endow.
Serafeim Chatzopoulos, Kostas Patroumpas, Alexandros Zeakis, Thanasis Vergoulis, Dimitrios Skoutas
2020 B ed.
SSDBM 2020: 32nd International Conference on Scientific and Statistical Database Management, Vienna, Austria, July 7-9, 2020
SSDBM
Elaheh Pourabbas, Dimitris Sacharidis, Kurt Stockinger, Thanasis Vergoulis
2020 J jnl
Simplifying Impact Prediction for Scientific Articles.
CoRR
Thanasis Vergoulis, Ilias Kanellos, Giorgos Giannopoulos, Theodore Dalamagas
2020 B conf
VeTo: Expert Set Expansion in Academia.
TPDL
Thanasis Vergoulis, Serafeim Chatzopoulos, Theodore Dalamagas, Christos Tryfonopoulos
2019 B conf
A Study on the Readability of Scientific Publications.
TPDL
Thanasis Vergoulis, Ilias Kanellos, Anargiros Tzerefos, Serafeim Chatzopoulos, Theodore Dalamagas, Spiros Skiadopoulos
2019 A conf
BIP! Finder: Facilitating Scientific Literature Search by Exploiting Impact-Based Ranking.
CIKM
Thanasis Vergoulis, Serafeim Chatzopoulos, Ilias Kanellos, Panagiotis Deligiannis, Christos Tryfonopoulos, Theodore Dalamagas
2019 B conf
SciTo Trends: Visualising Scientific Topic Trends.
TPDL
Serafeim Chatzopoulos, Panagiotis Deligiannis, Thanasis Vergoulis, Ilias Kanellos, Christos Tryfonopoulos, Theodore Dalamagas
2018 J jnl
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Nucleic Acids Res.
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2017 J jnl
BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets.
BMC Bioinform.
Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas
2016 J jnl
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.
Nucleic Acids Res.
Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.
Nucleic Acids Res.
Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions.
Nucleic Acids Res.
Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-miRPath v3.0: deciphering microRNA function with experimental support.
Nucleic Acids Res.
Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 B conf
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results.
TPDL
Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios K. Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2015 B conf
TarMiner: automatic extraction of miRNA targets from literature.
SSDBM
Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2015 J jnl
mirPub: a database for searching microRNA publications.
Bioinform.
Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios K. Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2014 B conf
MR-microT: a MapReduce-based MicroRNA target prediction method.
SSDBM
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis
2014 — conf
Publishing Diachronic Life Science Linked Data.
SWAT4LS
Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas
2014 — —
Προηγμένες υπηρεσίες αναζήτησης και διαχείρισης δεδομένων στις βιοεπιστήμες
Thanasis Vergoulis
2013 J jnl
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2012 J jnl
Approximate regional sequence matching for genomic databases.
VLDB J.
Thanasis Vergoulis, Theodore Dalamagas, Dimitris Sacharidis, Timos K. Sellis
2012 J jnl
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
Nucleic Acids Res.
Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2012 B conf
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction.
SSDBM
Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis
2012 J jnl
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.
Nucleic Acids Res.
Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2011 J jnl
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.
Nucleic Acids Res.
Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2010 J jnl
miRGen 2.0: a database of microRNA genomic information and regulation.
Nucleic Acids Res.
Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou
2009 J jnl
Accurate microRNA target prediction correlates with protein repression levels.
BMC Bioinform.
Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
2009 J jnl
DIANA-microT web server: elucidating microRNA functions through target prediction.
Nucleic Acids Res.
Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou