Tetsuro Toyoda

29 papers Journal 18Unranked 11

Year	Rank	Type	Title / Venue / Authors
2013	—	`conf`	Organizing Scientific Competitions on the Semantic Web. DEXA (1) Sayoko Shimoyama, Robert Sidney Cox III, David Gifford, Tetsuro Toyoda
2013	—	`conf`	PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda
2013	J	`jnl`	PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda
2013	J	`jnl`	PromoterCAD: data-driven design of plant regulatory DNA. Nucleic Acids Res. Robert Sidney Cox III, Koro Nishikata, Sayoko Shimoyama, Yuko Yoshida, Minami Matsui, Yuko Makita, Tetsuro Toyoda
2012	—	`conf`	Development of Linked Open Data for Bioresources. JIST Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata
2012	J	`jnl`	Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Bioinform. Shuji Kawaguchi, Kei Iida, Erimi Harada, Kousuke Hanada, Akihiro Matsui, Masanori Okamoto, Kazuo Shinozaki, Motoaki Seki, Tetsuro Toyoda
2011	—	`conf`	An Advanced Strategy for Integration of Biological Measurement Data. ICBO Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi
2011	—	`conf`	BioLOD.org: ontology-based integration of biological linked open data. SWAT4LS Koro Nishikata, Tetsuro Toyoda
2011	—	`conf`	BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data. SWAT4LS Norio Kobayashi, Tetsuro Toyoda
2011	—	`conf`	Genome design with the semantic web. SWAT4LS Robert Sidney Cox III, Tetsuro Toyoda
2011	—	`conf`	LinkData.org supports Japan's LOD challenge. SWAT4LS David Gifford, Tetsuro Toyoda
2011	J	`jnl`	Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Res. Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda
2011	J	`jnl`	The RIKEN integrated database of mammals. Nucleic Acids Res. Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda
2010	J	`jnl`	sORF finder: a program package to identify small open reading frames with high coding potential. Bioinform. Kousuke Hanada, Kenji Akiyama, Tetsuya Sakurai, Tetsuro Toyoda, Kazuo Shinozaki, Shin-Han Shiu
2009	J	`jnl`	OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda
2009	J	`jnl`	PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda
2008	—	`conf`	A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. SWAT4LS Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda
2008	J	`jnl`	Objective Evaluation Measures of Genetic Marker Selection in Large-Scale SNP genotyping. J. Bioinform. Comput. Biol. Eli Kaminuma, Hiroshi Masuya, Ikuo Miura, Hiromi Motegi, Kenzi R. Takahasi, Miki Nakazawa, Minami Matsui, Yoichi Gondo, Tetsuo Noda, Toshihiko Shiroishi, Shigeharu Wakana, Tetsuro Toyoda
2008	—	`conf`	Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic Web. SWAT4LS Norio Kobayashi, Tetsuro Toyoda
2008	J	`jnl`	Statistical search on the Semantic Web. Bioinform. Norio Kobayashi, Tetsuro Toyoda
2007	J	`jnl`	OmicBrowse: a browser of multidimensional omics annotations. Bioinform. Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki
2007	J	`jnl`	Phenosite: a Web Database Integrating the mouse phenotyping Platform and the Experimental Procedures in mice. J. Bioinform. Comput. Biol. Hiroshi Masuya, Sumi Yoshikawa, Naohiko Heida, Tetsuro Toyoda, Shigeharu Wakana, Toshihiko Shiroishi
2006	J	`jnl`	Erratum: " J. Bioinform. Comput. Biol. Eli Kaminuma, Naohiko Heida, Takeshi Yoshizumi, Miki Nakazawa, Minami Matsui, Tetsuro Toyoda
2005	J	`jnl`	RARGE: a large-scale database of RIKEN Nucleic Acids Res. Tetsuya Sakurai, Masakazu Satou, Kenji Akiyama, Kei Iida, Motoaki Seki, Takashi Kuromori, Takuya Ito, Akihiko Konagaya, Tetsuro Toyoda, Kazuo Shinozaki
2005	J	`jnl`	Three-dimensional Definition of Leaf Morphological Traits of J. Bioinform. Comput. Biol. Eli Kaminuma, Naohiko Heida, Yuko Tsumoto, Miki Nakazawa, Nobuharu Goto, Akihiko Konagaya, Minami Matsui, Tetsuro Toyoda
2004	J	`jnl`	Omic space: coordinate-based integration and analysis of genomic phenomic interactions. Bioinform. Tetsuro Toyoda, Akiyoshi Wada
2004	—	`conf`	TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks. ISMB/ECCB (Supplement of Bioinformatics) Naohiko Heida, Yoshikazu Hasegawa, Yoshiki Mochizuki, Katsura Hirosawa, Akihiko Konagaya, Tetsuro Toyoda
2003	J	`jnl`	GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. Bioinform. Tetsuro Toyoda, Yoshiki Mochizuki, Akihiko Konagaya
2003	J	`jnl`	KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data. Bioinform. Tetsuro Toyoda, Akihiko Konagaya