Terrence S. Furey

13 papers Misc 1Journal 12
YearRankTypeTitle / Venue / Authors
2024 J jnl
CoVar: A generalizable machine learning approach to identify the coordinated regulators driving variational gene expression.
PLoS Comput. Biol.
Satyaki Roy, Shehzad Z. Sheikh, Terrence S. Furey
2017 J jnl
Correcting nucleotide-specific biases in high-throughput sequencing data.
BMC Bioinform.
Jeremy R. Wang, Bryan Quach, Terrence S. Furey
2017 J jnl
DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.
Bioinform.
Bryan Quach, Terrence S. Furey
2016 J jnl
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.
Bioinform.
Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li
2010 J jnl
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins.
BMC Bioinform.
Mats Ensterö, Örjan Åkerborg, Daniel Lundin, Bei Wang, Terrence S. Furey, Marie Öhman, Jens Lagergren
2008 J jnl
F-Seq: a feature density estimator for high-throughput sequence tags.
Bioinform.
Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey
2007 J jnl
Genomic sweeping for hypermethylated genes.
Bioinform.
Liang Goh, Susan K. Murphy, Sayan Mukherjee, Terrence S. Furey
2006 J jnl
Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation.
PLoS Comput. Biol.
Zhong Wang, Huntington F. Willard, Sayan Mukherjee, Terrence S. Furey
2006 J jnl
The UCSC Genome Browser Database: update 2006.
Nucleic Acids Res.
Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
2004 J jnl
The UCSC Table Browser data retrieval tool.
Nucleic Acids Res.
Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent
2003 J jnl
The UCSC Genome Browser Database.
Nucleic Acids Res.
Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Yontao Lu, Krishna M. Roskin, Matt Schwartz, Charles W. Sugnet, Daryl J. Thomas, Ryan J. Weber, David Haussler, W. James Kent
2001 Misc conf
Promoter Region-Based Classification of Genes.
Pacific Symposium on Biocomputing
Paul Pavlidis, Terrence S. Furey, M. Liberto, David Haussler, William Noble Grundy
2000 J jnl
Support vector machine classification and validation of cancer tissue samples using microarray expression data.
Bioinform.
Terrence S. Furey, Nello Cristianini, Nigel Duffy, David W. Bednarski, Michèl Schummer, David Haussler