Taxiarchis Botsis

36 papers Journal 20Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Deduplicating the FDA adverse event reporting system with a novel application of network-based grouping. J. Biomed. Informatics Kory Kreimeyer, Jonathan Spiker, Oanh Dang, Suranjan De, Robert Ball, Taxiarchis Botsis
2024	—	`conf`	A Precision Oncology Platform to Support Genotype-Tailored Therapy Selection. MIE Taxiarchis Botsis, Jonathan Spiker, Kory Kreimeyer, Maria Fatteh, Jamie Wehr, Mimi Najjar, Jessica Tao, Rena Xian, Nicole L. Imamovic, Ander Pindzola, Adrian Dobs, Jenna V. Canzoniero, Valsamo Anagnostou
2024	J	`jnl`	AI-assisted Knowledge Discovery in Biomedical Literature to Support Decision-making in Precision Oncology. CoRR Ting He, Kory Kreimeyer, Mimi Najjar, Jonathan Spiker, Maria Fatteh, Valsamo Anagnostou, Taxiarchis Botsis
2024	—	`conf`	Using Retrieval-Augmented Generation to Capture Molecularly-Driven Treatment Relationships for Precision Oncology. MIE Kory Kreimeyer, Jenna V. Canzoniero, Maria Fatteh, Valsamo Anagnostou, Taxiarchis Botsis
2023	J	`jnl`	Trends and opportunities in computable clinical phenotyping: A scoping review. J. Biomed. Informatics Ting He, Anas Belouali, Jessica Patricoski, Harold P. Lehmann, Robert Ball, Valsamo Anagnostou, Kory Kreimeyer, Taxiarchis Botsis
2022	—	`conf`	Natural Language Processing Approaches for Retrieval of Clinically Relevant Genomic Information in Cancer. ICIMTH Taxiarchis Botsis, Joseph Murray, Alessandro Leal, Doreen Palsgrove, Wei Wang, James R. White, Victor E. Velculescu, Valsamo Anagnostou
2022	—	`conf`	Overcoming Major Barriers to Build Efficient Decision Support Systems in Pharmacovigilance. ICIMTH Kory Kreimeyer, Jonathan Spiker, Taxiarchis Botsis
2021	—	`conf`	An Evaluation of Pretrained BERT Models for Comparing Semantic Similarity Across Unstructured Clinical Trial Texts. ICIMTH Jessica Patricoski, Kory Kreimeyer, Archana Balan, Kent Hardart, Jessica Tao, Valsamo Anagnostou, Taxiarchis Botsis
2021	—	`conf`	Can FHIR Support Standardization in Post-Market Safety Surveillance? MIE Xingtong Wang, Harold P. Lehmann, Taxiarchis Botsis
2021	—	`conf`	Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. BIBM Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou
2021	J	`jnl`	Feature engineering and machine learning for causality assessment in pharmacovigilance: Lessons learned from application to the FDA Adverse Event Reporting System. Comput. Biol. Medicine Kory Kreimeyer, Oanh Dang, Jonathan Spiker, Monica A. Muñoz, Gary Rosner, Robert Ball, Taxiarchis Botsis
2020	J	`jnl`	Visual storytelling enhances knowledge dissemination in biomedical science. J. Biomed. Informatics Taxiarchis Botsis, Jennifer E. Fairman, Meghan Bridgid Moran, Valsamo Anagnostou
2019	J	`jnl`	Adverse Event extraction from Structured Product Labels using the Event-based Text-mining of Health Electronic Records (ETHER) system. Health Informatics J. Abhishek Pandey, Kory Kreimeyer, Matthew Foster, Oanh Dang, Thomas Ly, Wei Wang, Richard Forshee, Taxiarchis Botsis
2019	J	`jnl`	Data-driven modeling and prediction of blood glucose dynamics: Machine learning applications in type 1 diabetes. Artif. Intell. Medicine Ashenafi Zebene Woldaregay, Eirik Årsand, Ståle Walderhaug, David J. Albers, Lena Mamykina, Taxiarchis Botsis, Gunnar Hartvigsen
2018	J	`jnl`	Evaluation of Natural Language Processing (NLP) systems to annotate drug product labeling with MedDRA terminology. J. Biomed. Informatics Thomas Ly, Carol A. Pamer, Oanh Dang, Sonja Brajovic, Shahrukh Haider, Taxiarchis Botsis, David Milward, Andrew Winter, Susan Lu, Robert Ball
2017	—	`conf`	An Early Infectious Disease Outbreak Detection Mechanism Based on Self-Recorded Data from People with Diabetes. MedInfo Ashenafi Zebene Woldaregay, Eirik Årsand, Taxiarchis Botsis, Gunnar Hartvigsen
2017	J	`jnl`	Application of Natural Language Processing and Network Analysis Techniques to Post-market Reports for the Evaluation of Dose-related Anti-Thymocyte Globulin Safety Patterns. Appl. Clin. Inform. Taxiarchis Botsis, Matthew Foster, Nina Arya, Kory Kreimeyer, Abhishek Pandey, Deepa Arya
2017	—	`conf`	Monitoring biomedical literature for post-market safety purposes by analyzing networks of text-based coded information. CRI Taxiarchis Botsis, Matthew Foster, Kory Kreimeyer, Abhishek Pandey, Richard Forshee
2017	J	`jnl`	Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review. J. Biomed. Informatics Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Nina Arya, Gwendolyn Halford, Sandra F. Jones, Richard Forshee, Mark Walderhaug, Taxiarchis Botsis
2016	J	`jnl`	A new algorithmic approach for the extraction of temporal associations from clinical narratives with an application to medical product safety surveillance reports. J. Biomed. Informatics Wei Wang, Kory Kreimeyer, Emily Jane Woo, Robert Ball, Matthew Foster, Abhishek Pandey, John Scott, Taxiarchis Botsis
2016	J	`jnl`	Decision support environment for medical product safety surveillance. J. Biomed. Informatics Taxiarchis Botsis, Christopher Jankosky, Deepa Arya, Kory Kreimeyer, Matthew Foster, Abhishek Pandey, Wei Wang, Guangfan Zhang, Richard Forshee, Ravi Goud, David Menschik, Mark Walderhaug, Emily Jane Woo, John Scott
2016	J	`jnl`	Use of data mining at the Food and Drug Administration. J. Am. Medical Informatics Assoc. Hesha J. Duggirala, Joseph M. Tonning, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout
2015	J	`jnl`	Identifying Similar Cases in Document Networks Using Cross-Reference Structures. IEEE J. Biomed. Health Informatics Taxiarchis Botsis, John Scott, Emily Jane Woo, Robert Ball
2014	—	`conf`	Novel Algorithms for Improved Pattern Recognition Using the US FDA Adverse Event Network Analyzer. MIE Taxiarchis Botsis, John Scott, Ravi Goud, Pamela Toman, Andrea Sutherland, Robert Ball
2012	J	`jnl`	Proof of concept for the role of glycemic control in the early detection of infections in diabetics. Health Informatics J. Taxiarchis Botsis, Albert M. Lai, George Hripcsak, Walter Palmas, Justin B. Starren, Gunnar Hartvigsen
2012	J	`jnl`	Vaccine adverse event text mining system for extracting features from vaccine safety reports. J. Am. Medical Informatics Assoc. Taxiarchis Botsis, Thomas Buttolph, Michael D. Nguyen, Scott Winiecki, Emily Jane Woo, Robert Ball
2011	—	`conf`	Network Analysis of Possible Anaphylaxis Cases Reported to the US Vaccine Adverse Event Reporting System after H1N1 Influenza Vaccine. MIE Taxiarchis Botsis, Robert Ball
2011	J	`jnl`	Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection. J. Am. Medical Informatics Assoc. Taxiarchis Botsis, Michael D. Nguyen, Emily Jane Woo, Marianthi Markatou, Robert Ball
2010	—	`conf`	Exploring new directions in disease surveillance for people with diabetes: Lessons learned and future plans. MedInfo Taxiarchis Botsis, Gunnar Hartvigsen
2010	J	`jnl`	Sixteen years of ICPC use in Norwegian primary care: looking through the facts. BMC Medical Informatics Decis. Mak. Taxiarchis Botsis, Carl-Fredrik Bassøe, Gunnar Hartvigsen
2009	—	`ch.`	Implementation of a Computerized System in an Oncology Unit. Database Technologies: Concepts, Methodologies, Tools, and Applications Taxiarchis Botsis, Konstantinos Syrigos
2009	—	`conf`	New Directions in Electronic Disease Surveillance: Detection of Infectious Diseases during the Incubation Period. eTELEMED Taxiarchis Botsis, Johan Gustav Bellika, Gunnar Hartvigsen
2008	—	`conf`	Electronic Disease Surveillance for Sensitive Population Groups - The Diabetics Case Study. MIE Taxiarchis Botsis, Ole K. Hejlesen, Johan Gustav Bellika, Gunnar Hartvigsen
2007	J	`jnl`	Automatic detection of clustered microcalcifications in digital mammograms using mathematical morphology and neural networks. Signal Process. Stelios Halkiotis, Taxiarchis Botsis, Maria Rangoussi
2007	J	`jnl`	Implementation of a Computerized System in an Oncology Unit. Int. J. Heal. Inf. Syst. Informatics Taxiarchis Botsis, Konstantinos Syrigos
2003	—	`conf`	Mathematical modelling for the study of respiratory mechanics. MIE Taxiarchis Botsis, John Mantas