Tarcisio Mendes de Farias

34 papers B 1Journal 23Unranked 10

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A User-Friendly SPARQL Query Editor Powered by Lightweight Metadata. ESWC (Satellite Events) Vincent Emonet, Ana Claudia Sima, Tarcisio Mendes de Farias
2025	J	`jnl`	A user-friendly SPARQL query editor powered by lightweight metadata. CoRR Vincent Emonet, Ana Claudia Sima, Tarcisio Mendes de Farias
2025	—	`conf`	An Automated Framework to generate pairs of Natural Language Questions and SPARQL Queries from Common RDF Graph Patterns. SWAT4HCLS Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Yamamoto Yasunori, Ana Claudia Sima, Norio Kobayashi
2025	J	`jnl`	Federated SPARQL query performance evaluation for exploring disease model mouse: combining gene expression, orthology, and disease knowledge graphs. BMC Medical Informatics Decis. Mak. Tatsuya Kushida, Tarcisio Mendes de Farias, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frederic B. Bastian, Hiroshi Masuya
2025	J	`jnl`	SPARQL-LLM: Real-Time SPARQL Query Generation from Natural Language Questions. CoRR Panayiotis Smeros, Vincent Emonet, Ruijie Wang, Ana Claudia Sima, Tarcisio Mendes de Farias
2024	J	`jnl`	A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. CoRR Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima
2024	—	`conf`	CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods. SWAT4HCLS Jerven T. Bolleman, Elias Crum, Iulian Dragan, Jakub Galgonek, Mark Ibberson, Tarcisio Mendes de Farias, Marek Moos, Marco Pagni, Ruben Taelman, Jirí Vondrásek, Ana Claudia Sima
2024	—	`conf`	LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs. HGAIS@ISWC Vincent Emonet, Jerven T. Bolleman, Severine Duvaud, Tarcisio Mendes de Farias, Ana Claudia Sima
2024	J	`jnl`	LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs. CoRR Vincent Emonet, Jerven T. Bolleman, Severine Duvaud, Tarcisio Mendes de Farias, Ana Claudia Sima
2024	J	`jnl`	SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. CoRR Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
2024	—	`conf`	SPARQL generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. SWAT4HCLS Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi
2023	J	`jnl`	Boosting interoperability: towards an increasingly reusable bioinformatics knowledge base. CoRR Tarcisio Mendes de Farias, Julien Wollbrett, Marc Robinson-Rechavi, Frederic B. Bastian
2023	—	`conf`	Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya
2023	—	`conf`	On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs. SeWeBMeDA@ESWC Ana Claudia Sima, Tarcisio Mendes de Farias
2023	J	`jnl`	On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs. CoRR Ana Claudia Sima, Tarcisio Mendes de Farias
2023	—	`conf`	Towards predicting essential proteins via federated SPARQL queries. SWAT4HCLS Petros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima
2022	J	`jnl`	Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation. Distributed Parallel Databases Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2022	J	`jnl`	Federating and querying heterogeneous and distributed Web APIs and triple stores. CoRR Tarcisio Mendes de Farias, Christophe Dessimoz, Aarón Ayllón-Benítez, Chen Yang, Jiao Long, Ana Claudia Sima
2021	J	`jnl`	Accessing scientific data through knowledge graphs with Patterns Diego Calvanese, Davide Lanti, Tarcisio Mendes de Farias, Alessandro Mosca, Guohui Xiao
2021	B	`conf`	Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data. SSDBM Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2021	J	`jnl`	Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data. CoRR Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova, Christophe Dessimoz, Marc Robinson-Rechavi, Erich Zbinden, Kurt Stockinger
2021	J	`jnl`	INODE: Building an End-to-End Data Exploration System in Practice [Extended Vision]. CoRR Sihem Amer-Yahia, Georgia Koutrika, Frederic B. Bastian, Theofilos Belmpas, Martin Braschler, Ursin Brunner, Diego Calvanese, Maximilian Fabricius, Orest Gkini, Catherine Kosten, Davide Lanti, Antonis Litke, Hendrik Lücke-Tieke, Francesco Alessandro Massucci, Tarcisio Mendes de Farias, Alessandro Mosca, Francesco Multari, Nikolaos Papadakis, Dimitris Papadopoulos, Yogendra Patil, Aurélien Personnaz, Guillem Rull, Ana Claudia Sima, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Guohui Xiao, Kurt Stockinger
2021	J	`jnl`	INODE: Building an End-to-End Data Exploration System in Practice. SIGMOD Rec. Sihem Amer-Yahia, Georgia Koutrika, Martin Braschler, Diego Calvanese, Davide Lanti, Hendrik Lücke-Tieke, Alessandro Mosca, Tarcisio Mendes de Farias, Dimitris Papadopoulos, Yogendra Patil, Guillem Rull, Ellery Smith, Dimitrios Skoutas, Srividya Subramanian, Kurt Stockinger
2021	J	`jnl`	OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. Nucleic Acids Res. Adrian M. Altenhoff, Clément-Marie Train, Kimberly J. Gilbert, Ishita Mediratta, Tarcisio Mendes de Farias, David Moi, Yannis Nevers, Hale-Seda Radoykova, Victor Rossier, Alex Warwick Vesztrocy, Natasha M. Glover, Christophe Dessimoz
2021	J	`jnl`	Querying knowledge graphs in natural language. J. Big Data Shiqi Liang, Kurt Stockinger, Tarcisio Mendes de Farias, Maria Anisimova, Manuel Gil
2021	J	`jnl`	The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. Frederic B. Bastian, Julien Roux, Anne Niknejad, Aurélie Comte, Sara S. Fonseca Costa, Tarcisio Mendes de Farias, Sébastien Moretti, Gilles Parmentier, Valentine Rech de Laval, Marta Rosikiewicz, Julien Wollbrett, Amina Echchiki, Angélique Escoriza, Walid H. Gharib, Mar Gonzales-Porta, Yohan Jarosz, Balazs Laurenczy, Philippe Moret, Emilie Person, Patrick Roelli, Komal Sanjeev, Mathieu Seppey, Marc Robinson-Rechavi
2019	J	`jnl`	A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL. F1000Research Ana Claudia Sima, Christophe Dessimoz, Kurt Stockinger, Monique Zahn-Zabal, Tarcisio Mendes de Farias
2019	J	`jnl`	Enabling semantic queries across federated bioinformatics databases. Database J. Biol. Databases Curation Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson-Rechavi, Christophe Dessimoz
2019	J	`jnl`	Enhancing interoperable datasets with virtual links. CoRR Tarcisio Mendes de Farias, Christophe Dessimoz
2019	—	`conf`	VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links. OTM Conferences Tarcisio Mendes de Farias, Kurt Stockinger, Christophe Dessimoz
2017	J	`jnl`	A performance benchmark over semantic rule checking approaches in construction industry. Adv. Eng. Informatics Pieter Pauwels, Tarcisio Mendes de Farias, Chi Zhang, Ana Roxin, Jakob Beetz, Jos De Roo, Christophe Nicolle
2016	—	`conf`	Querying and reasoning over large scale building data sets: an outline of a performance benchmark. SBD@SIGMOD Pieter Pauwels, Tarcisio Mendes de Farias, Chi Zhang, Ana Roxin, Jakob Beetz, Jos De Roo
2016	J	`jnl`	SWRL rule-selection methodology for ontology interoperability. Data Knowl. Eng. Tarcisio Mendes de Farias, Ana Roxin, Christophe Nicolle
2015	J	`jnl`	IfcWoD, Semantically Adapting IFC Model Relations into OWL Properties. CoRR Tarcisio Mendes de Farias, Ana Roxin, Christophe Nicolle