Tao Wang

28 papers Journal 20Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
MFCLDTA: Multi-scale feature contrastive learning for predicting drug-target binding affinity.
Expert Syst. Appl.
Zhen Tian, Saisai Zhu, Zhixia Teng, Xiaoqiang Yan, Tao Wang
2025 J jnl
BioRAGent: natural language biomedical querying with retrieval-augmented multiagent systems.
Briefings Bioinform.
Manlian Bi, Zhijie Bao, Dongna Xie, Xiaohan Xie, Changxiao Yang, Tao Wang, Yongtian Wang, Jiajie Peng
2025 J jnl
Inference of gene coexpression networks from single-cell transcriptome data based on variance decomposition analysis.
Briefings Bioinform.
Bin Lian, Haohui Zhang, Tao Wang, Yongtian Wang, Xuequn Shang, N. Ahmad Aziz, Jialu Hu
2025 J jnl
Integrative Graph-Based Framework for Predicting circRNA Drug Resistance Using Disease Contextualization and Deep Learning.
IEEE J. Biomed. Health Informatics
Yongtian Wang, Wenkai Shen, Yewei Shen, Shang Feng, Tao Wang, Xuequn Shang, Jiajie Peng
2025 J jnl
MAEST: accurately spatial domain detection in spatial transcriptomics with graph masked autoencoder.
Briefings Bioinform.
Pengfei Zhu, Han Shu, Yongtian Wang, Xiaofeng Wang, Yuan Zhao, Jialu Hu, Jiajie Peng, Xuequn Shang, Zhen Tian, Jing Chen, Tao Wang
2025 J jnl
VGAE-CCI: variational graph autoencoder-based construction of 3D spatial cell-cell communication network.
Briefings Bioinform.
Tianjiao Zhang, Xiang Zhang, Zhenao Wu, Jixiang Ren, Zhongqian Zhao, Hongfei Zhang, Guohua Wang, Tao Wang
2025 J jnl
cfMethylPre: deep transfer learning enhances cancer detection based on circulating cell-free DNA methylation profiling.
Briefings Bioinform.
Xuchao Zhang, Jing Chen, Yongtian Wang, Xiaofeng Wang, Jialu Hu, Jiajie Peng, Xuequn Shang, Yanpu Wang, Tao Wang
2024 — conf
A Scenario Model-driven Task Planning Method for Unmanned Aerial Vehicle Swarm.
Internetware
Yunwei Dong, Zeshan Li, Ruiheng Zhang, Rubing Huang, Tao Wang
2024 J jnl
Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster.
Briefings Bioinform.
Tao Wang, Han Shu, Jialu Hu, Yongtian Wang, Jin Chen, Jiajie Peng, Xuequn Shang
2024 J jnl
Scbean: a python library for single-cell multi-omics data analysis.
Bioinform.
Haohui Zhang, Yuwei Wang, Bin Lian, Yiran Wang, Xingyi Li, Tao Wang, Xuequn Shang, Hui Yang, Ahmad Aziz, Jialu Hu
2024 J jnl
postGWAS: A web server for deciphering the causality post the genome-wide association studies.
Comput. Biol. Medicine
Tao Wang, Zhihao Yan, Yiming Zhang, Zhuofei Lou, Xiaozhu Zheng, Duoduo Mai, Yongtian Wang, Xuequn Shang, Bing Xiao, Jiajie Peng, Jin Chen
2023 J jnl
Collaborative deep learning improves disease-related circRNA prediction based on multi-source functional information.
Briefings Bioinform.
Yongtian Wang, Xinmeng Liu, Yewei Shen, Xuerui Song, Tao Wang, Xuequn Shang, Jiajie Peng
2023 J jnl
DFinder: a novel end-to-end graph embedding-based method to identify drug-food interactions.
Bioinform.
Tao Wang, Jinjin Yang, Yifu Xiao, Jingru Wang, Yuxian Wang, Xi Zeng, Yongtian Wang, Jiajie Peng
2023 J jnl
scMultiGAN: cell-specific imputation for single-cell transcriptomes with multiple deep generative adversarial networks.
Briefings Bioinform.
Tao Wang, Hui Zhao, Yungang Xu, Yongtian Wang, Xuequn Shang, Jiajie Peng, Bing Xiao
2022 J jnl
A network-based method for brain disease gene prediction by integrating brain connectome and molecular network.
Briefings Bioinform.
Wei Wang, Ruijiang Han, Menghan Zhang, Yuxian Wang, Tao Wang, Yongtian Wang, Xuequn Shang, Jiajie Peng
2022 J jnl
A review and performance evaluation of clustering frameworks for single-cell Hi-C data.
Briefings Bioinform.
Caiwei Zhen, Yuxian Wang, Jiaquan Geng, Lu Han, Jingyi Li, Jinghao Peng, Tao Wang, Jianye Hao, Xuequn Shang, Zhongyu Wei, Peican Zhu, Jiajie Peng
2022 J jnl
Correction to: Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation.
Briefings Bioinform.
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
2022 — conf
Discovering eQTL Regulatory Patterns Through eQTLMotif.
BIBM
Tao Wang, Hui Zhao, Yifu Xiao, Hanzi Yang, Xipeng Yin, Yongtian Wang, Bing Xiao, Xuequn Shang, Jiajie Peng
2022 J jnl
Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation.
Briefings Bioinform.
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
2022 — conf
Exploring genetic mechanisms underlying EEG endophenotypes via summary-data-based Mendelian randomization.
BIBM
Jing Chen, Pengfei Zhu, Jinghui Pan, Tao Wang
2022 — conf
Hypergraph-based Gene Ontology Embedding for Disease Gene Prediction.
BIBM
Tao Wang, Hengbo Xu, Ranye Zhang, Yifu Xiao, Jiajie Peng, Xuequn Shang
2021 J jnl
A pipeline for RNA-seq based eQTL analysis with automated quality control procedures.
BMC Bioinform.
Tao Wang, Yongzhuang Liu, Junpeng Ruan, Xianjun Dong, Yadong Wang, Jiajie Peng
2021 — conf
Predicting Hepatoma-Related Genes Based on Representation Learning of PPI network and Gene Ontology Annotations.
BIBM
Tao Wang, Zhiyuan Shao, Yifu Xiao, Xuchao Zhang, Yitian Chen, Binze Shi, Siyu Chen, Yuxian Wang, Jiajie Peng, Xuequn Shang
2019 — conf
An automated quality control pipeline for eQTL analysis with RNA-seq data.
BIBM
Tao Wang, Junpeng Ruan, Quanwei Yin, Xianjun Dong, Yadong Wang
2019 J jnl
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology.
BMC Bioinform.
Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang
2018 — conf
Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks.
BIBM
Tao Wang, Jiajie Peng, Yadong Wang, Jin Chen
2018 — conf
TSGOE: A web tool for tissue-specific gene ontology enrichment.
BIBM
Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang
2016 J jnl
Extending gene ontology with gene association networks.
Bioinform.
Jiajie Peng, Tao Wang, Jixuan Wang, Yadong Wang, Jin Chen